Wall clock time and date at job start Sun Mar 29 2020 22:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47176 * 50.58720 * 3 2 1 5 5 C 1.36944 * 119.99672 * 264.21358 * 4 3 2 6 6 H 1.07995 * 119.99681 * 192.40369 * 5 4 3 7 7 C 1.38805 * 120.00049 * 12.40649 * 5 4 3 8 8 N 1.31627 * 120.00280 * 22.00999 * 7 5 4 9 9 Si 1.86801 * 119.99978 * 202.00692 * 7 5 4 10 10 H 1.48500 * 109.46893 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47216 * 120.00224 * 9 7 5 12 12 H 1.48505 * 109.46951 * 240.00176 * 9 7 5 13 13 C 1.46500 * 120.00192 * 84.21305 * 4 3 2 14 14 C 1.52992 * 109.47156 * 85.29194 * 13 4 3 15 15 C 1.53118 * 109.52493 * 185.21550 * 14 13 4 16 16 C 1.53035 * 109.28099 * 182.43835 * 15 14 13 17 17 N 1.46847 * 109.51946 * 59.18169 * 16 15 14 18 18 C 1.46901 * 111.00182 * 174.15732 * 17 16 15 19 19 C 1.46837 * 111.20255 * 298.25806 * 17 16 15 20 20 C 1.53037 * 109.52521 * 61.74219 * 19 17 16 21 21 H 4.40645 * 5.51464 * 180.02562 * 4 1 2 22 22 H 1.09000 * 109.47076 * 290.58449 * 3 2 1 23 23 H 1.08999 * 109.46759 * 170.58577 * 3 2 1 24 24 H 0.96993 * 120.00036 * 180.02562 * 8 7 5 25 25 H 1.09001 * 109.46876 * 325.29286 * 13 4 3 26 26 H 1.09003 * 109.46712 * 205.29797 * 13 4 3 27 27 H 1.09000 * 109.57898 * 305.37662 * 14 13 4 28 28 H 1.09005 * 109.49658 * 62.50341 * 15 14 13 29 29 H 1.09003 * 109.53891 * 302.40826 * 15 14 13 30 30 H 1.08996 * 109.46718 * 299.16818 * 16 15 14 31 31 H 1.08995 * 109.46580 * 179.19670 * 16 15 14 32 32 H 1.09004 * 109.46914 * 60.00248 * 18 17 16 33 33 H 1.09002 * 109.47371 * 300.00343 * 18 17 16 34 34 H 1.08989 * 109.47535 * 180.02562 * 18 17 16 35 35 H 1.09002 * 109.46774 * 181.75723 * 19 17 16 36 36 H 1.09001 * 109.46388 * 301.72400 * 19 17 16 37 37 H 1.08997 * 109.50800 * 180.88631 * 20 19 17 38 38 H 1.08999 * 109.53636 * 60.78128 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1348 -0.8761 -1.0671 5 6 3.4764 -2.1721 -0.7859 6 1 4.0198 -2.7572 -1.5130 7 6 3.1240 -2.7336 0.4336 8 7 2.1286 -2.2257 1.1291 9 14 4.0625 -4.2103 1.0879 10 1 5.1273 -4.5869 0.1237 11 1 4.6770 -3.8667 2.3954 12 1 3.1289 -5.3517 1.2643 13 6 3.2582 -0.3664 -2.4351 14 6 4.6095 0.3319 -2.5992 15 6 4.6869 0.9774 -3.9855 16 6 6.0631 1.6218 -4.1667 17 7 7.1066 0.5984 -4.0246 18 6 8.4326 1.1527 -4.3290 19 6 7.0824 -0.0023 -2.6850 20 6 5.7366 -0.6952 -2.4595 21 1 -1.0498 -0.0001 -0.0004 22 1 3.0096 -0.3605 0.9621 23 1 3.0089 1.0147 -0.1681 24 1 1.8826 -2.6179 1.9814 25 1 2.4556 0.3445 -2.6317 26 1 3.1896 -1.1956 -3.1393 27 1 4.7193 1.0996 -1.8333 28 1 3.9133 1.7400 -4.0755 29 1 4.5379 0.2159 -4.7511 30 1 6.2055 2.3931 -3.4099 31 1 6.1266 2.0699 -5.1582 32 1 8.6503 1.9715 -3.6431 33 1 8.4446 1.5242 -5.3537 34 1 9.1866 0.3738 -4.2165 35 1 7.8861 -0.7338 -2.6002 36 1 7.2200 0.7766 -1.9350 37 1 5.7129 -1.1275 -1.4592 38 1 5.6040 -1.4839 -3.2001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897164070.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:06 Heat of formation + Delta-G solvation = 61.020786 kcal Electronic energy + Delta-G solvation = -17265.515529 eV Core-core repulsion = 14723.396382 eV Total energy + Delta-G solvation = -2542.119147 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.07113 -37.88811 -34.99192 -33.46431 -32.41177 -31.63330 -28.89785 -27.94593 -26.09919 -24.01599 -23.64937 -21.96245 -20.52635 -19.21767 -18.13742 -16.99513 -16.63798 -15.93144 -15.71759 -15.43760 -15.40383 -14.99397 -14.66398 -14.14541 -13.83241 -13.32640 -13.19558 -13.09647 -13.01968 -12.72860 -12.52490 -12.25892 -12.13680 -12.00992 -11.89979 -11.59966 -11.18226 -10.98944 -10.77257 -10.69978 -10.25637 -9.22252 -8.87813 -7.79272 -5.15239 1.47012 1.51095 1.59575 2.31932 2.52258 2.60721 3.09424 3.31902 3.78346 3.99375 4.02719 4.13660 4.16254 4.34459 4.47551 4.56372 4.61977 4.70640 4.74809 4.85624 4.89155 4.93907 5.00733 5.04019 5.10734 5.19840 5.23710 5.36640 5.44587 5.59940 5.65832 5.68538 5.73754 6.20219 6.25266 6.33153 7.15731 7.33148 7.89896 8.31524 9.23780 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.024283 B = 0.007767 C = 0.006178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.790239 B = 3604.024873 C = 4531.418083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.134 4.134 3 C 0.266 3.734 4 N -0.599 5.599 5 C -0.245 4.245 6 H 0.077 0.923 7 C -0.054 4.054 8 N -0.922 5.922 9 Si 0.953 3.047 10 H -0.268 1.268 11 H -0.293 1.293 12 H -0.302 1.302 13 C 0.156 3.844 14 C -0.093 4.093 15 C -0.105 4.105 16 C 0.061 3.939 17 N -0.557 5.557 18 C 0.026 3.974 19 C 0.063 3.937 20 C -0.096 4.096 21 H 0.223 0.777 22 H 0.079 0.921 23 H 0.055 0.945 24 H 0.244 0.756 25 H 0.036 0.964 26 H 0.041 0.959 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.029 0.971 31 H 0.088 0.912 32 H 0.024 0.976 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.026 0.974 37 H 0.058 0.942 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.738 8.245 -9.067 15.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 C -0.137 4.137 3 C 0.141 3.859 4 N -0.319 5.319 5 C -0.375 4.375 6 H 0.095 0.905 7 C -0.249 4.249 8 N -0.569 5.569 9 Si 0.783 3.217 10 H -0.192 1.192 11 H -0.220 1.220 12 H -0.230 1.230 13 C 0.030 3.970 14 C -0.114 4.114 15 C -0.143 4.143 16 C -0.066 4.066 17 N -0.282 5.282 18 C -0.122 4.122 19 C -0.065 4.065 20 C -0.134 4.134 21 H 0.240 0.760 22 H 0.096 0.904 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.107 0.893 32 H 0.043 0.957 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.642 7.801 -9.292 14.895 hybrid contribution -0.053 -0.504 1.402 1.490 sum 8.589 7.297 -7.890 13.758 Atomic orbital electron populations 1.25075 0.96457 1.06155 1.04213 1.24931 0.96363 0.95406 0.96985 1.17855 0.82543 0.91741 0.93766 1.44264 1.74627 1.09104 1.03876 1.19508 1.27833 0.89675 1.00440 0.90487 1.25436 0.98396 1.01127 0.99943 1.70313 1.27159 1.44207 1.15222 0.85407 0.78591 0.79489 0.78211 1.19206 1.22011 1.23008 1.20919 0.94755 0.96214 0.85093 1.21599 0.96010 0.97100 0.96723 1.21559 0.96463 1.00053 0.96265 1.22073 0.91141 0.92164 1.01257 1.61948 1.05238 1.33156 1.27822 1.22391 0.89639 0.98756 1.01423 1.22041 0.98101 0.97743 0.88581 1.21431 0.93273 0.97541 1.01170 0.76032 0.90362 0.92724 0.94629 0.94583 0.94077 0.93020 0.90708 0.91713 0.95317 0.89337 0.95692 0.90217 0.91077 0.90770 0.95622 0.92325 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.67 19.25 74.32 1.43 -12.23 16 2 C -0.13 -6.64 11.87 31.12 0.37 -6.27 16 3 C 0.27 12.86 5.43 84.57 0.46 13.32 16 4 N -0.60 -28.80 2.31 -712.56 -1.64 -30.44 16 5 C -0.24 -12.91 8.12 84.03 0.68 -12.23 16 6 H 0.08 4.00 7.76 -2.91 -0.02 3.97 16 7 C -0.05 -2.97 4.92 84.86 0.42 -2.55 16 8 N -0.92 -53.39 9.37 21.65 0.20 -53.18 16 9 Si 0.95 44.75 29.61 68.60 2.03 46.78 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 12 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 13 C 0.16 6.21 5.14 86.38 0.44 6.65 16 14 C -0.09 -3.09 2.46 -10.71 -0.03 -3.12 16 15 C -0.11 -2.77 5.38 30.65 0.16 -2.61 16 16 C 0.06 1.43 5.46 86.32 0.47 1.90 16 17 N -0.56 -13.96 4.91 -922.63 -4.53 -18.49 16 18 C 0.03 0.49 9.59 127.69 1.22 1.72 16 19 C 0.06 1.78 5.46 86.33 0.47 2.25 16 20 C -0.10 -3.27 4.82 30.65 0.15 -3.12 16 21 H 0.22 8.14 7.80 -4.43 -0.03 8.10 16 22 H 0.08 4.22 6.07 -2.39 -0.01 4.20 16 23 H 0.05 2.32 8.07 -2.39 -0.02 2.30 16 24 H 0.24 13.99 8.31 -92.71 -0.77 13.22 16 25 H 0.04 1.40 8.11 -2.39 -0.02 1.38 16 26 H 0.04 1.69 8.00 -2.39 -0.02 1.67 16 27 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 28 H 0.07 1.77 8.14 -2.38 -0.02 1.76 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.09 1.71 8.12 -2.39 -0.02 1.69 16 32 H 0.02 0.46 8.14 -2.38 -0.02 0.44 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.27 8.09 -2.39 -0.02 1.25 16 35 H 0.07 1.97 8.09 -2.39 -0.02 1.95 16 36 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 2.33 6.77 -2.39 -0.02 2.32 16 38 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -60.91 305.71 3.31 -57.60 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.99 Total: 14.01 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 6.26 Total: -16.28 kcal Atomic # 7 Polarization: -96.14 SS G_CDS: -5.97 Total: -102.11 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -60.91 3.31 -57.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897164070.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.620 kcal (2) G-P(sol) polarization free energy of solvation -60.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds