Wall clock time and date at job start Sun Mar 29 2020 22:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86797 * 120.00108 * 2 1 4 4 H 1.48502 * 109.47009 * 274.65721 * 3 2 1 5 5 H 1.48493 * 109.47104 * 34.65775 * 3 2 1 6 6 H 1.48502 * 109.47051 * 154.65835 * 3 2 1 7 7 C 1.39889 * 119.99560 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99742 * 162.15744 * 7 2 1 9 9 C 1.41212 * 120.00430 * 342.15123 * 7 2 1 10 10 C 1.40834 * 120.18284 * 155.14349 * 9 7 2 11 11 C 1.36433 * 119.81344 * 180.30274 * 10 9 7 12 12 C 1.39314 * 120.18492 * 359.46774 * 11 10 9 13 13 O 1.35676 * 119.81644 * 180.26044 * 12 11 10 14 14 C 1.42895 * 117.00189 * 0.25097 * 13 12 11 15 15 C 1.53000 * 109.47118 * 180.02562 * 14 13 12 16 16 N 1.46494 * 109.47621 * 65.00016 * 15 14 13 17 17 O 1.21802 * 119.99883 * 44.99746 * 16 15 14 18 18 O 1.21795 * 120.00228 * 225.00545 * 16 15 14 19 19 C 1.39311 * 120.36407 * 0.51257 * 12 11 10 20 20 C 1.36438 * 120.18396 * 359.77335 * 19 12 11 21 21 H 0.96996 * 120.00015 * 0.02562 * 1 2 3 22 22 H 1.08004 * 120.09058 * 0.03028 * 10 9 7 23 23 H 1.08001 * 119.90907 * 179.70311 * 11 10 9 24 24 H 1.09002 * 109.47145 * 300.00285 * 14 13 12 25 25 H 1.09003 * 109.47289 * 60.00319 * 14 13 12 26 26 H 1.09001 * 109.46940 * 185.00521 * 15 14 13 27 27 H 1.09003 * 109.47308 * 304.99771 * 15 14 13 28 28 H 1.07998 * 119.91049 * 179.74192 * 19 12 11 29 29 H 1.08002 * 120.09625 * 179.97438 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3919 2.1032 -1.3955 5 1 1.4930 2.6222 0.7961 6 1 3.5861 1.4137 0.5993 7 6 2.0081 -1.2115 -0.0005 8 1 3.0493 -1.2339 -0.2872 9 6 1.3531 -2.4052 0.3737 10 6 1.8224 -3.6475 -0.0953 11 6 1.1800 -4.7956 0.2661 12 6 0.0694 -4.7424 1.1055 13 8 -0.5605 -5.8892 1.4644 14 6 -0.0274 -7.1108 0.9492 15 6 -0.8635 -8.2868 1.4580 16 7 -2.2195 -8.1948 0.9114 17 8 -2.3847 -7.9366 -0.2674 18 8 -3.1817 -8.3762 1.6357 19 6 -0.4010 -3.5177 1.5743 20 6 0.2265 -2.3599 1.2177 21 1 -0.4850 0.8400 -0.0004 22 1 2.6857 -3.6907 -0.7428 23 1 1.5357 -5.7487 -0.0966 24 1 -0.0566 -7.0891 -0.1402 25 1 1.0038 -7.2265 1.2828 26 1 -0.4057 -9.2231 1.1387 27 1 -0.9078 -8.2569 2.5468 28 1 -1.2650 -3.4847 2.2213 29 1 -0.1397 -1.4112 1.5816 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899230093.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:30 Heat of formation + Delta-G solvation = -31.375091 kcal Electronic energy + Delta-G solvation = -16011.253382 eV Core-core repulsion = 13095.742798 eV Total energy + Delta-G solvation = -2915.510584 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.08446 -39.03909 -36.70659 -36.31983 -33.63084 -32.66114 -29.84165 -29.10973 -26.50782 -24.85427 -22.87788 -20.94672 -20.74859 -18.83040 -18.44576 -17.76402 -17.31764 -17.07068 -15.40051 -15.25746 -14.69304 -14.05597 -13.53640 -13.13908 -12.75904 -12.33400 -12.20292 -11.70029 -11.65144 -11.39322 -11.16176 -11.02792 -10.96064 -10.93051 -10.73840 -10.17714 -9.93671 -9.47131 -9.11626 -7.75617 -7.17141 -6.80935 -4.35185 0.65223 1.74653 2.68430 2.84987 3.04531 3.07419 3.14330 3.39908 3.89352 4.14153 4.40172 4.53174 4.67625 5.09409 5.35204 5.56878 5.91622 6.09011 6.37831 6.55710 6.87120 6.99746 7.07744 7.31751 7.44517 7.65580 7.66911 7.90815 8.09201 8.25412 8.52969 8.80747 8.87077 10.13868 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.059428 B = 0.004861 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.042753 B = 5758.346103 C = 5962.327633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.461 4.461 8 H 0.078 0.922 9 C 0.092 3.908 10 C -0.200 4.200 11 C -0.161 4.161 12 C -0.018 4.018 13 O -0.331 6.331 14 C 0.054 3.946 15 C -0.010 4.010 16 N -0.011 5.011 17 O -0.156 6.156 18 O -0.167 6.167 19 C -0.113 4.113 20 C -0.135 4.135 21 H 0.282 0.718 22 H 0.097 0.903 23 H 0.094 0.906 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.149 0.851 27 H 0.138 0.862 28 H 0.097 0.903 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.421 -10.022 2.508 10.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.491 4.491 8 H 0.096 0.904 9 C 0.090 3.910 10 C -0.219 4.219 11 C -0.180 4.180 12 C -0.061 4.061 13 O -0.248 6.248 14 C -0.023 4.023 15 C -0.127 4.127 16 N 0.512 4.488 17 O -0.378 6.378 18 O -0.386 6.386 19 C -0.132 4.132 20 C -0.154 4.154 21 H 0.093 0.907 22 H 0.115 0.885 23 H 0.112 0.888 24 H 0.101 0.899 25 H 0.107 0.893 26 H 0.166 0.834 27 H 0.156 0.844 28 H 0.116 0.884 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.791 -9.917 2.928 10.494 hybrid contribution 0.336 0.617 -0.289 0.759 sum 2.127 -9.300 2.639 9.898 Atomic orbital electron populations 1.69829 1.07567 1.29374 1.35189 1.25913 0.94742 1.01376 0.92279 0.86300 0.80699 0.80664 0.79085 1.19559 1.19991 1.18456 1.19491 0.98129 0.91196 1.40282 0.90393 1.17618 0.91654 0.92166 0.89561 1.20555 1.03308 0.92453 1.05614 1.20361 0.97745 0.97901 1.01970 1.18455 0.97577 0.83882 1.06149 1.85805 1.55546 1.12460 1.70953 1.22627 0.96403 0.82939 1.00329 1.24683 0.80455 1.03034 1.04500 1.44542 1.05512 0.97609 1.01164 1.94573 1.93099 1.49688 1.00413 1.94541 1.34257 1.52563 1.57235 1.19828 1.00596 0.90117 1.02631 1.20975 0.98606 0.96236 0.99595 0.90734 0.88512 0.88817 0.89885 0.89283 0.83367 0.84411 0.88438 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.33 10.97 55.54 0.61 -19.73 15 2 C 0.07 1.84 5.13 -17.34 -0.09 1.75 15 3 Si 0.91 18.33 29.60 -169.99 -5.03 13.30 15 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 5 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 15 7 C -0.46 -12.01 9.04 -37.84 -0.34 -12.35 15 8 H 0.08 1.94 7.91 -52.48 -0.41 1.52 15 9 C 0.09 2.42 5.57 -106.80 -0.60 1.83 15 10 C -0.20 -4.77 9.74 -39.25 -0.38 -5.15 15 11 C -0.16 -3.49 8.96 -39.83 -0.36 -3.85 15 12 C -0.02 -0.41 6.71 -38.78 -0.26 -0.67 15 13 O -0.33 -6.46 10.07 -18.73 -0.19 -6.65 15 14 C 0.05 0.74 4.73 37.16 0.18 0.91 15 15 C -0.01 -0.10 6.81 -4.04 -0.03 -0.13 15 16 N -0.01 -0.16 4.18 -10.61 -0.04 -0.20 15 17 O -0.16 -2.63 18.33 -29.46 -0.54 -3.17 15 18 O -0.17 -2.68 19.22 -29.46 -0.57 -3.24 15 19 C -0.11 -2.71 9.92 -39.83 -0.40 -3.11 15 20 C -0.13 -3.48 8.64 -39.25 -0.34 -3.81 15 21 H 0.28 6.55 8.30 -40.82 -0.34 6.22 15 22 H 0.10 2.15 8.06 -52.48 -0.42 1.72 15 23 H 0.09 1.69 6.27 -52.49 -0.33 1.36 15 24 H 0.08 1.18 7.17 -51.93 -0.37 0.81 15 25 H 0.09 1.01 7.66 -51.93 -0.40 0.62 15 26 H 0.15 0.88 8.14 -51.93 -0.42 0.45 15 27 H 0.14 1.23 8.11 -51.93 -0.42 0.81 15 28 H 0.10 2.19 8.06 -52.49 -0.42 1.77 15 29 H 0.13 3.33 6.18 -52.49 -0.32 3.01 15 LS Contribution 264.80 15.07 3.99 3.99 Total: -1.00 -29.78 264.80 -7.04 -36.82 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -2.66 Total: 3.45 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: -2.61 Total: -24.58 kcal Atomic # 7 Polarization: -20.49 SS G_CDS: 0.57 Total: -19.93 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -1.29 Total: -13.06 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.78 -7.04 -36.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899230093.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.448 kcal (2) G-P(sol) polarization free energy of solvation -29.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds