Wall clock time and date at job start Sun Mar 29 2020 22:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86797 * 120.00108 * 2 1 4 4 H 1.48502 * 109.47009 * 274.65721 * 3 2 1 5 5 H 1.48493 * 109.47104 * 34.65775 * 3 2 1 6 6 H 1.48502 * 109.47051 * 154.65835 * 3 2 1 7 7 C 1.39889 * 119.99560 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99742 * 162.15744 * 7 2 1 9 9 C 1.41212 * 120.00430 * 342.15123 * 7 2 1 10 10 C 1.40834 * 120.18284 * 155.14349 * 9 7 2 11 11 C 1.36433 * 119.81344 * 180.30274 * 10 9 7 12 12 C 1.39314 * 120.18492 * 359.46774 * 11 10 9 13 13 O 1.35676 * 119.81644 * 180.26044 * 12 11 10 14 14 C 1.42895 * 117.00189 * 0.25097 * 13 12 11 15 15 C 1.53000 * 109.47118 * 180.02562 * 14 13 12 16 16 N 1.46494 * 109.47621 * 65.00016 * 15 14 13 17 17 O 1.21802 * 119.99883 * 44.99746 * 16 15 14 18 18 O 1.21795 * 120.00228 * 225.00545 * 16 15 14 19 19 C 1.39311 * 120.36407 * 0.51257 * 12 11 10 20 20 C 1.36438 * 120.18396 * 359.77335 * 19 12 11 21 21 H 0.96996 * 120.00015 * 0.02562 * 1 2 3 22 22 H 1.08004 * 120.09058 * 0.03028 * 10 9 7 23 23 H 1.08001 * 119.90907 * 179.70311 * 11 10 9 24 24 H 1.09002 * 109.47145 * 300.00285 * 14 13 12 25 25 H 1.09003 * 109.47289 * 60.00319 * 14 13 12 26 26 H 1.09001 * 109.46940 * 185.00521 * 15 14 13 27 27 H 1.09003 * 109.47308 * 304.99771 * 15 14 13 28 28 H 1.07998 * 119.91049 * 179.74192 * 19 12 11 29 29 H 1.08002 * 120.09625 * 179.97438 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3919 2.1032 -1.3955 5 1 1.4930 2.6222 0.7961 6 1 3.5861 1.4137 0.5993 7 6 2.0081 -1.2115 -0.0005 8 1 3.0493 -1.2339 -0.2872 9 6 1.3531 -2.4052 0.3737 10 6 1.8224 -3.6475 -0.0953 11 6 1.1800 -4.7956 0.2661 12 6 0.0694 -4.7424 1.1055 13 8 -0.5605 -5.8892 1.4644 14 6 -0.0274 -7.1108 0.9492 15 6 -0.8635 -8.2868 1.4580 16 7 -2.2195 -8.1948 0.9114 17 8 -2.3847 -7.9366 -0.2674 18 8 -3.1817 -8.3762 1.6357 19 6 -0.4010 -3.5177 1.5743 20 6 0.2265 -2.3599 1.2177 21 1 -0.4850 0.8400 -0.0004 22 1 2.6857 -3.6907 -0.7428 23 1 1.5357 -5.7487 -0.0966 24 1 -0.0566 -7.0891 -0.1402 25 1 1.0038 -7.2265 1.2828 26 1 -0.4057 -9.2231 1.1387 27 1 -0.9078 -8.2569 2.5468 28 1 -1.2650 -3.4847 2.2213 29 1 -0.1397 -1.4112 1.5816 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899230093.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:30 Heat of formation + Delta-G solvation = -48.860047 kcal Electronic energy + Delta-G solvation = -16012.011587 eV Core-core repulsion = 13095.742798 eV Total energy + Delta-G solvation = -2916.268788 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.18272 -40.64436 -38.38122 -37.50085 -35.36133 -33.85931 -31.65294 -30.92788 -27.78788 -26.61519 -24.10382 -22.72840 -22.38465 -19.91688 -19.59488 -19.34081 -18.82853 -18.40797 -17.08102 -16.68302 -16.20144 -15.78183 -14.97183 -14.52108 -14.10621 -14.05353 -13.86371 -13.24849 -13.17235 -12.78626 -12.63287 -12.59647 -12.37832 -12.23508 -12.16510 -11.82493 -11.66682 -11.26872 -10.92637 -9.61509 -9.00668 -8.63629 -6.27419 -0.58008 0.78184 0.89650 0.98184 1.39176 1.48397 1.54934 2.19696 2.22721 2.68868 3.20002 3.58813 3.65772 3.82519 4.11726 4.22832 4.28374 4.35962 4.77826 5.01654 5.15836 5.22791 5.24177 5.50298 5.58602 5.80979 6.01494 6.20521 6.40738 6.48022 6.69916 6.91242 7.01145 8.33459 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.059428 B = 0.004861 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.042753 B = 5758.346103 C = 5962.327633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.033 3.967 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.497 4.497 8 H 0.079 0.921 9 C 0.058 3.942 10 C -0.208 4.208 11 C -0.158 4.158 12 C -0.005 4.005 13 O -0.347 6.347 14 C 0.040 3.960 15 C -0.002 4.002 16 N -0.009 5.009 17 O -0.197 6.197 18 O -0.179 6.179 19 C -0.132 4.132 20 C -0.155 4.155 21 H 0.288 0.712 22 H 0.110 0.890 23 H 0.137 0.863 24 H 0.080 0.920 25 H 0.124 0.876 26 H 0.205 0.795 27 H 0.159 0.841 28 H 0.103 0.897 29 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.626 -11.549 2.734 12.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.182 4.182 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.527 4.527 8 H 0.097 0.903 9 C 0.056 3.944 10 C -0.228 4.228 11 C -0.176 4.176 12 C -0.048 4.048 13 O -0.264 6.264 14 C -0.036 4.036 15 C -0.117 4.117 16 N 0.508 4.492 17 O -0.412 6.412 18 O -0.399 6.399 19 C -0.151 4.151 20 C -0.175 4.175 21 H 0.099 0.901 22 H 0.128 0.872 23 H 0.155 0.845 24 H 0.098 0.902 25 H 0.142 0.858 26 H 0.222 0.778 27 H 0.176 0.824 28 H 0.122 0.878 29 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.999 -11.466 3.113 12.254 hybrid contribution -0.072 0.854 -0.298 0.907 sum 2.926 -10.612 2.815 11.362 Atomic orbital electron populations 1.69892 1.09082 1.30598 1.36108 1.26778 0.95459 1.04654 0.91281 0.85184 0.79196 0.75956 0.79327 1.18795 1.19250 1.18071 1.19757 0.98460 0.92337 1.42124 0.90261 1.17976 0.92417 0.93519 0.90477 1.20836 1.03846 0.92491 1.05623 1.20721 0.96867 0.99067 1.00944 1.18491 0.97049 0.84600 1.04660 1.85777 1.56044 1.13323 1.71250 1.23089 0.98769 0.81231 1.00470 1.25060 0.77384 1.03729 1.05531 1.45189 1.06850 0.96425 1.00715 1.94578 1.93719 1.51426 1.01514 1.94531 1.35902 1.52551 1.56960 1.19997 1.00997 0.90825 1.03268 1.20882 0.99543 0.96280 1.00762 0.90140 0.87207 0.84539 0.90174 0.85824 0.77843 0.82364 0.87842 0.87343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.86 10.97 21.82 0.24 -43.62 15 2 C 0.03 1.64 5.13 85.23 0.44 2.07 15 3 Si 0.98 37.95 29.60 68.60 2.03 39.98 15 4 H -0.26 -9.78 7.11 99.48 0.71 -9.07 15 5 H -0.27 -9.92 7.11 99.48 0.71 -9.22 15 6 H -0.26 -9.66 7.11 99.48 0.71 -8.95 15 7 C -0.50 -26.51 9.04 23.40 0.21 -26.30 15 8 H 0.08 4.02 7.91 -2.91 -0.02 4.00 15 9 C 0.06 3.12 5.57 -21.28 -0.12 3.01 15 10 C -0.21 -9.83 9.74 22.48 0.22 -9.61 15 11 C -0.16 -6.50 8.96 22.11 0.20 -6.30 15 12 C 0.00 -0.21 6.71 22.79 0.15 -0.06 15 13 O -0.35 -12.71 10.07 -89.93 -0.91 -13.61 15 14 C 0.04 0.94 4.73 71.98 0.34 1.28 15 15 C 0.00 -0.03 6.81 86.38 0.59 0.56 15 16 N -0.01 -0.26 4.18 -187.50 -0.78 -1.04 15 17 O -0.20 -6.40 18.33 18.88 0.35 -6.05 15 18 O -0.18 -5.41 19.22 18.89 0.36 -5.05 15 19 C -0.13 -6.43 9.92 22.11 0.22 -6.21 15 20 C -0.16 -8.28 8.64 22.48 0.19 -8.09 15 21 H 0.29 13.77 8.30 -92.71 -0.77 13.00 15 22 H 0.11 4.77 8.06 -2.91 -0.02 4.74 15 23 H 0.14 4.36 6.27 -2.91 -0.02 4.34 15 24 H 0.08 1.98 7.17 -2.39 -0.02 1.96 15 25 H 0.12 2.12 7.66 -2.39 -0.02 2.10 15 26 H 0.20 1.15 8.14 -2.39 -0.02 1.13 15 27 H 0.16 2.06 8.11 -2.39 -0.02 2.04 15 28 H 0.10 4.75 8.06 -2.91 -0.02 4.72 15 29 H 0.11 6.04 6.18 -2.91 -0.02 6.03 15 Total: -1.00 -67.13 264.80 4.91 -62.22 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 1.17 Total: 16.82 kcal Atomic # 6 Polarization: -52.10 SS G_CDS: 2.44 Total: -49.66 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: -0.54 Total: -44.66 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.20 Total: -24.71 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Total: -67.13 4.91 -62.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899230093.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.362 kcal (2) G-P(sol) polarization free energy of solvation -67.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds