Wall clock time and date at job start Sun Mar 29 2020 22:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00184 * 2 1 4 4 H 1.48502 * 109.47243 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47244 * 300.00485 * 3 2 1 6 6 H 1.48498 * 109.46971 * 60.00406 * 3 2 1 7 7 C 1.37874 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99981 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00005 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.47190 * 180.02562 * 9 7 2 11 11 C 1.35201 * 126.65574 * 89.70975 * 10 9 7 12 12 C 1.42317 * 103.93888 * 180.26461 * 11 10 9 13 13 C 1.48367 * 126.94076 * 180.02562 * 12 11 10 14 14 C 1.36509 * 123.95770 * 179.69642 * 13 12 11 15 15 S 1.72103 * 104.12655 * 179.90497 * 14 13 12 16 16 N 1.56451 * 96.04975 * 0.32567 * 15 14 13 17 17 N 1.27503 * 109.53897 * 359.80586 * 16 15 14 18 18 N 1.31035 * 106.11765 * 0.02562 * 12 11 10 19 19 O 1.20905 * 111.41032 * 359.97438 * 18 12 11 20 20 H 0.97006 * 119.99781 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47248 * 60.00155 * 9 7 2 22 22 H 1.09005 * 109.47008 * 300.00560 * 9 7 2 23 23 H 1.08000 * 128.03029 * 0.24250 * 11 10 9 24 24 H 1.07997 * 127.94108 * 359.97410 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 6 2.7588 -4.2546 1.0841 12 6 3.6146 -5.2501 0.5345 13 6 4.4511 -6.2195 1.2840 14 6 5.2482 -7.1563 0.6920 15 16 5.9738 -7.9862 2.0137 16 7 5.2648 -7.1593 3.1368 17 7 4.5075 -6.2813 2.6063 18 7 3.5144 -5.1376 -0.7672 19 8 2.7509 -4.2525 -1.0762 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 -0.8903 22 1 0.6245 -2.5570 0.8897 23 1 2.5747 -4.0367 2.1257 24 1 5.3917 -7.3350 -0.3634 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901405823.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:24 Heat of formation + Delta-G solvation = 105.904427 kcal Electronic energy + Delta-G solvation = -13537.604416 eV Core-core repulsion = 10967.259246 eV Total energy + Delta-G solvation = -2570.345170 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.031 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -45.84892 -41.94445 -35.92618 -35.58793 -33.66940 -32.30995 -29.68262 -28.18880 -25.52181 -24.99285 -23.49988 -21.35619 -19.54973 -18.95714 -18.18207 -17.84770 -16.99523 -16.80904 -16.49623 -15.71001 -14.61100 -14.54593 -14.38125 -13.61486 -13.47941 -13.16057 -12.78122 -12.68711 -12.42899 -12.24147 -11.99035 -11.71926 -11.27681 -10.96261 -10.64334 -10.42848 -10.16871 -8.26915 -6.39746 -0.93352 -0.02821 0.12867 0.55377 0.79167 1.42653 1.44467 1.56587 1.75986 2.09983 2.36434 2.42243 3.07661 3.31494 3.56104 3.92075 4.17033 4.25356 4.50742 4.62984 5.02715 5.21301 5.31848 5.65399 5.98803 6.54291 6.67960 7.11992 7.29325 8.83578 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.048718 B = 0.005048 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.594067 B = 5545.814770 C = 5740.532993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.017 3.983 3 Si 0.967 3.033 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.541 4.541 8 H 0.055 0.945 9 C 0.093 3.907 10 C 0.027 3.973 11 C -0.234 4.234 12 C 0.086 3.914 13 C 0.077 3.923 14 C -0.270 4.270 15 S 0.561 5.439 16 N -0.326 5.326 17 N -0.250 5.250 18 N -0.367 5.367 19 O 0.087 5.913 20 H 0.270 0.730 21 H 0.034 0.966 22 H 0.050 0.950 23 H 0.178 0.822 24 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.253 -14.996 1.636 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.792 3.208 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.579 4.579 8 H 0.074 0.926 9 C 0.055 3.945 10 C -0.036 4.036 11 C -0.257 4.257 12 C -0.074 4.074 13 C -0.067 4.067 14 C -0.427 4.427 15 S 0.696 5.304 16 N -0.306 5.306 17 N -0.118 5.118 18 N -0.074 5.074 19 O 0.023 5.977 20 H 0.079 0.921 21 H 0.052 0.948 22 H 0.068 0.932 23 H 0.195 0.805 24 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 12.182 -16.143 2.345 20.359 hybrid contribution -0.866 2.032 -0.544 2.274 sum 11.316 -14.112 1.800 18.178 Atomic orbital electron populations 1.70034 1.07384 1.28423 1.50084 1.25776 0.95773 1.02769 0.94002 0.85360 0.78699 0.78646 0.78133 1.19386 1.19920 1.19976 1.21242 0.93231 0.90634 1.52803 0.92645 1.17853 0.90888 0.86472 0.99258 1.25233 0.97691 0.95859 0.84784 1.22461 1.02525 0.99189 1.01539 1.20656 0.99542 0.97665 0.89580 1.19282 1.00533 0.98185 0.88747 1.28783 1.02331 1.00644 1.10966 1.80872 1.33460 1.28886 0.87221 1.78438 1.13608 1.10134 1.28460 1.71409 1.15452 1.15354 1.09559 1.73994 1.11065 1.07761 1.14605 1.84748 1.43666 1.35254 1.34057 0.92072 0.94820 0.93162 0.80491 0.75866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.16 13.29 21.45 0.28 -51.87 14 2 C 0.02 0.91 5.46 84.65 0.46 1.37 14 3 Si 0.97 42.66 29.54 68.60 2.03 44.69 14 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 14 5 H -0.27 -11.69 7.11 99.48 0.71 -10.99 14 6 H -0.27 -11.73 7.11 99.48 0.71 -11.03 14 7 C -0.54 -29.51 9.09 25.60 0.23 -29.27 14 8 H 0.06 3.02 7.74 -2.91 -0.02 3.00 14 9 C 0.09 4.67 5.54 29.10 0.16 4.83 14 10 C 0.03 1.18 6.66 24.99 0.17 1.35 14 11 C -0.23 -9.50 11.04 22.58 0.25 -9.26 14 12 C 0.09 3.20 7.16 42.98 0.31 3.50 14 13 C 0.08 2.39 6.85 41.34 0.28 2.67 14 14 C -0.27 -5.68 11.36 67.42 0.77 -4.91 14 15 S 0.56 8.71 23.39 -56.49 -1.32 7.39 14 16 N -0.33 -8.53 12.52 37.02 0.46 -8.07 14 17 N -0.25 -8.01 11.66 -51.24 -0.60 -8.61 14 18 N -0.37 -14.14 12.06 -49.42 -0.60 -14.74 14 19 O 0.09 3.69 11.18 71.23 0.80 4.48 14 20 H 0.27 14.31 8.31 -92.70 -0.77 13.54 14 21 H 0.03 1.74 8.14 -2.39 -0.02 1.73 14 22 H 0.05 2.57 8.14 -2.38 -0.02 2.55 14 23 H 0.18 6.82 8.06 -2.91 -0.02 6.80 14 24 H 0.22 3.53 8.06 -2.91 -0.02 3.51 14 Total: -1.00 -63.25 246.56 4.93 -58.32 By element: Atomic # 1 Polarization: -3.12 SS G_CDS: 1.24 Total: -1.88 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: 2.63 Total: -29.72 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -0.45 Total: -83.29 kcal Atomic # 8 Polarization: 3.69 SS G_CDS: 0.80 Total: 4.48 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: 8.71 SS G_CDS: -1.32 Total: 7.39 kcal Total: -63.25 4.93 -58.32 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901405823.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.224 kcal (2) G-P(sol) polarization free energy of solvation -63.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds