Wall clock time and date at job start Sun Mar 29 2020 22:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86801 * 119.99993 * 2 1 4 4 H 1.48492 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46841 * 300.00009 * 3 2 1 6 6 H 1.48505 * 109.46994 * 59.99858 * 3 2 1 7 7 C 1.40045 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00188 * 180.02562 * 7 2 1 9 9 C 1.46381 * 119.99980 * 0.02562 * 7 2 1 10 10 O 1.21683 * 119.99918 * 359.97438 * 9 7 2 11 11 N 1.34776 * 119.99777 * 179.97438 * 9 7 2 12 12 C 1.47423 * 125.65056 * 359.97438 * 11 9 7 13 13 C 1.54909 * 104.83010 * 204.14806 * 12 11 9 14 14 C 1.55152 * 101.58183 * 322.99055 * 13 12 11 15 15 C 1.47026 * 125.64516 * 179.97438 * 11 9 7 16 16 H 1.09005 * 110.01070 * 59.43398 * 15 11 9 17 17 C 1.52997 * 109.88309 * 298.33930 * 15 11 9 18 18 F 1.39905 * 109.47157 * 302.19069 * 17 15 11 19 19 F 1.39900 * 109.47010 * 182.19460 * 17 15 11 20 20 F 1.39897 * 109.47422 * 62.19152 * 17 15 11 21 21 H 0.97002 * 120.00295 * 359.97438 * 1 2 3 22 22 H 1.08994 * 110.36770 * 85.30589 * 12 11 9 23 23 H 1.09002 * 110.45338 * 323.03070 * 12 11 9 24 24 H 1.08996 * 111.00217 * 204.91132 * 13 12 11 25 25 H 1.09005 * 111.04034 * 81.07920 * 13 12 11 26 26 H 1.09000 * 110.71732 * 277.13738 * 14 13 12 27 27 H 1.08996 * 110.87143 * 153.94097 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7006 1.3464 -0.0006 5 1 1.8819 2.3964 -1.2125 6 1 1.8819 2.3965 1.2125 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 3.4160 -3.7928 0.0000 13 6 3.6759 -5.1918 -0.6124 14 6 2.4961 -6.0120 -0.0272 15 6 1.3427 -4.9871 0.0011 16 1 0.7140 -5.1124 -0.8806 17 6 0.5064 -5.1793 1.2678 18 9 1.3160 -4.9940 2.3937 19 9 -0.0254 -6.4732 1.2837 20 9 -0.5360 -4.2464 1.2844 21 1 -0.4851 0.8400 0.0004 22 1 3.8022 -3.7467 1.0182 23 1 3.8752 -3.0184 -0.6145 24 1 4.6334 -5.5922 -0.2794 25 1 3.6262 -5.1579 -1.7008 26 1 2.7290 -6.3579 0.9799 27 1 2.2490 -6.8532 -0.6748 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000913019499.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:42 Heat of formation + Delta-G solvation = -190.705581 kcal Electronic energy + Delta-G solvation = -17981.268448 eV Core-core repulsion = 14516.992035 eV Total energy + Delta-G solvation = -3464.276413 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.072 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.29694 -46.91292 -46.58151 -38.61745 -35.76598 -32.57540 -30.62484 -29.87236 -26.24050 -24.59942 -22.20948 -20.96582 -19.40228 -17.84286 -17.39362 -17.25886 -16.18054 -15.74219 -15.02554 -14.26530 -13.76540 -13.54676 -13.33886 -13.25547 -13.08065 -12.87966 -12.79869 -12.61168 -12.47326 -11.96124 -11.41557 -11.19952 -10.97440 -10.93845 -10.81029 -10.54660 -10.34632 -10.19080 -8.92077 -7.71138 -7.49820 -6.26777 -4.72411 3.09730 3.17774 3.22217 3.45939 3.93287 4.24203 4.36823 4.55354 4.59296 4.97569 5.03123 5.20781 5.33798 5.60546 5.69250 5.80916 5.89442 6.01624 6.22531 6.34022 6.51795 7.05907 7.37520 7.95246 8.25680 8.94431 9.28621 10.46998 10.66343 Molecular weight = 237.07amu Principal moments of inertia in cm(-1) A = 0.033849 B = 0.009562 C = 0.008118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.002874 B = 2927.692192 C = 3448.285445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.086 3.914 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.533 4.533 8 H 0.072 0.928 9 C 0.561 3.439 10 O -0.552 6.552 11 N -0.634 5.634 12 C 0.116 3.884 13 C -0.131 4.131 14 C -0.127 4.127 15 C 0.104 3.896 16 H 0.098 0.902 17 C 0.431 3.569 18 F -0.190 7.190 19 F -0.201 7.201 20 F -0.152 7.152 21 H 0.270 0.730 22 H 0.053 0.947 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.772 -8.958 -0.321 11.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.135 4.135 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.570 4.570 8 H 0.090 0.910 9 C 0.368 3.632 10 O -0.432 6.432 11 N -0.374 5.374 12 C -0.008 4.008 13 C -0.169 4.169 14 C -0.164 4.164 15 C -0.004 4.004 16 H 0.116 0.884 17 C 0.375 3.625 18 F -0.172 7.172 19 F -0.183 7.183 20 F -0.133 7.133 21 H 0.080 0.920 22 H 0.071 0.929 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.830 -8.720 -0.297 10.493 hybrid contribution 0.274 0.689 0.310 0.804 sum 6.104 -8.031 0.014 10.088 Atomic orbital electron populations 1.70025 1.07064 1.27447 1.34643 1.25740 0.94686 1.00393 0.92637 0.86260 0.80437 0.81492 0.78286 1.18690 1.20096 1.20079 1.20863 0.93639 0.88490 1.53993 0.90998 1.18301 0.87066 0.81010 0.76832 1.90695 1.13340 1.85093 1.54039 1.49064 1.05376 1.02556 1.80411 1.22004 0.83035 0.95945 0.99847 1.22808 0.97536 0.95686 1.00860 1.22639 0.94273 0.96865 1.02672 1.22365 0.95892 0.88953 0.93188 0.88387 1.21524 0.80468 0.73235 0.87304 1.93100 1.73336 1.95011 1.55711 1.93094 1.87815 1.40359 1.97000 1.93377 1.58929 1.64378 1.96604 0.91955 0.92860 0.90349 0.90275 0.90652 0.90265 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.67 11.83 55.55 0.66 -22.01 15 2 C 0.09 2.36 5.50 -17.37 -0.10 2.26 15 3 Si 0.91 19.86 29.56 -169.99 -5.02 14.83 15 4 H -0.26 -5.50 7.11 56.52 0.40 -5.10 15 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 6 H -0.28 -5.93 7.11 56.52 0.40 -5.53 15 7 C -0.53 -14.81 8.98 -35.63 -0.32 -15.13 15 8 H 0.07 1.82 6.64 -52.49 -0.35 1.47 15 9 C 0.56 15.82 7.50 -12.98 -0.10 15.72 15 10 O -0.55 -17.56 12.46 5.20 0.06 -17.49 15 11 N -0.63 -14.23 2.96 -164.66 -0.49 -14.72 15 12 C 0.12 2.02 6.52 -2.53 -0.02 2.00 15 13 C -0.13 -1.69 7.09 -24.59 -0.17 -1.87 15 14 C -0.13 -1.75 6.17 -24.90 -0.15 -1.90 15 15 C 0.10 2.00 2.97 -66.95 -0.20 1.80 15 16 H 0.10 1.88 8.14 -51.93 -0.42 1.46 15 17 C 0.43 8.92 2.72 37.16 0.10 9.02 15 18 F -0.19 -3.94 16.53 2.25 0.04 -3.91 15 19 F -0.20 -3.64 17.06 2.25 0.04 -3.61 15 20 F -0.15 -3.86 14.07 2.25 0.03 -3.83 15 21 H 0.27 7.25 8.29 -40.82 -0.34 6.91 15 22 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.08 1.37 7.15 -51.93 -0.37 1.00 15 24 H 0.08 0.81 8.14 -51.93 -0.42 0.39 15 25 H 0.07 0.93 8.14 -51.93 -0.42 0.50 15 26 H 0.08 1.06 7.36 -51.93 -0.38 0.68 15 27 H 0.08 0.95 8.14 -51.93 -0.42 0.53 15 LS Contribution 243.38 15.07 3.67 3.67 Total: -1.00 -33.51 243.38 -4.32 -37.83 By element: Atomic # 1 Polarization: -0.33 SS G_CDS: -2.35 Total: -2.68 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: -0.95 Total: 11.91 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.17 Total: -36.73 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: 0.06 Total: -17.49 kcal Atomic # 9 Polarization: -11.45 SS G_CDS: 0.11 Total: -11.34 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -33.51 -4.32 -37.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913019499.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.876 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds