Wall clock time and date at job start Sun Mar 29 2020 22:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86801 * 119.99993 * 2 1 4 4 H 1.48492 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46841 * 300.00009 * 3 2 1 6 6 H 1.48505 * 109.46994 * 59.99858 * 3 2 1 7 7 C 1.40045 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00188 * 180.02562 * 7 2 1 9 9 C 1.46381 * 119.99980 * 0.02562 * 7 2 1 10 10 O 1.21683 * 119.99918 * 359.97438 * 9 7 2 11 11 N 1.34776 * 119.99777 * 179.97438 * 9 7 2 12 12 C 1.47423 * 125.65056 * 359.97438 * 11 9 7 13 13 C 1.54909 * 104.83010 * 204.14806 * 12 11 9 14 14 C 1.55152 * 101.58183 * 322.99055 * 13 12 11 15 15 C 1.47026 * 125.64516 * 179.97438 * 11 9 7 16 16 H 1.09005 * 110.01070 * 59.43398 * 15 11 9 17 17 C 1.52997 * 109.88309 * 298.33930 * 15 11 9 18 18 F 1.39905 * 109.47157 * 302.19069 * 17 15 11 19 19 F 1.39900 * 109.47010 * 182.19460 * 17 15 11 20 20 F 1.39897 * 109.47422 * 62.19152 * 17 15 11 21 21 H 0.97002 * 120.00295 * 359.97438 * 1 2 3 22 22 H 1.08994 * 110.36770 * 85.30589 * 12 11 9 23 23 H 1.09002 * 110.45338 * 323.03070 * 12 11 9 24 24 H 1.08996 * 111.00217 * 204.91132 * 13 12 11 25 25 H 1.09005 * 111.04034 * 81.07920 * 13 12 11 26 26 H 1.09000 * 110.71732 * 277.13738 * 14 13 12 27 27 H 1.08996 * 110.87143 * 153.94097 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7006 1.3464 -0.0006 5 1 1.8819 2.3964 -1.2125 6 1 1.8819 2.3965 1.2125 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 3.4160 -3.7928 0.0000 13 6 3.6759 -5.1918 -0.6124 14 6 2.4961 -6.0120 -0.0272 15 6 1.3427 -4.9871 0.0011 16 1 0.7140 -5.1124 -0.8806 17 6 0.5064 -5.1793 1.2678 18 9 1.3160 -4.9940 2.3937 19 9 -0.0254 -6.4732 1.2837 20 9 -0.5360 -4.2464 1.2844 21 1 -0.4851 0.8400 0.0004 22 1 3.8022 -3.7467 1.0182 23 1 3.8752 -3.0184 -0.6145 24 1 4.6334 -5.5922 -0.2794 25 1 3.6262 -5.1579 -1.7008 26 1 2.7290 -6.3579 0.9799 27 1 2.2490 -6.8532 -0.6748 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000913019499.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:42 Heat of formation + Delta-G solvation = -213.923286 kcal Electronic energy + Delta-G solvation = -17982.275243 eV Core-core repulsion = 14516.992035 eV Total energy + Delta-G solvation = -3465.283208 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.97056 -48.52550 -48.38514 -40.25740 -37.66136 -34.66905 -32.25712 -31.30270 -28.27713 -26.12141 -23.90145 -22.27054 -21.16353 -19.49031 -19.10116 -19.00496 -17.96124 -17.60681 -16.65171 -15.96103 -15.38863 -15.26469 -15.07872 -14.92116 -14.77153 -14.59938 -14.40360 -14.20344 -13.91468 -13.59663 -13.14550 -13.02989 -12.72045 -12.53394 -12.21169 -11.96938 -11.91308 -11.67011 -10.96356 -9.85899 -9.31559 -8.31974 -6.88016 1.39236 1.39651 1.57714 1.83675 2.18540 2.42051 2.53733 2.92117 3.10930 3.41079 3.61253 3.71958 3.86764 4.11966 4.29895 4.60958 4.82851 4.94333 4.95999 5.06927 5.31115 5.34703 5.50429 5.95985 6.27490 6.84331 7.33790 8.40717 8.63496 Molecular weight = 237.07amu Principal moments of inertia in cm(-1) A = 0.033849 B = 0.009562 C = 0.008118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.002874 B = 2927.692192 C = 3448.285445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.027 3.973 3 Si 0.999 3.001 4 H -0.244 1.244 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.560 4.560 8 H 0.090 0.910 9 C 0.544 3.456 10 O -0.603 6.603 11 N -0.643 5.643 12 C 0.103 3.897 13 C -0.112 4.112 14 C -0.115 4.115 15 C 0.097 3.903 16 H 0.092 0.908 17 C 0.426 3.574 18 F -0.191 7.191 19 F -0.184 7.184 20 F -0.186 7.186 21 H 0.275 0.725 22 H 0.056 0.944 23 H 0.074 0.926 24 H 0.120 0.880 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.453 -9.710 -0.712 13.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.188 4.188 3 Si 0.818 3.182 4 H -0.167 1.167 5 H -0.192 1.192 6 H -0.196 1.196 7 C -0.596 4.596 8 H 0.108 0.892 9 C 0.351 3.649 10 O -0.488 6.488 11 N -0.381 5.381 12 C -0.019 4.019 13 C -0.150 4.150 14 C -0.152 4.152 15 C -0.011 4.011 16 H 0.110 0.890 17 C 0.371 3.629 18 F -0.173 7.173 19 F -0.166 7.166 20 F -0.168 7.168 21 H 0.085 0.915 22 H 0.075 0.925 23 H 0.093 0.907 24 H 0.138 0.862 25 H 0.104 0.896 26 H 0.107 0.893 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.568 -9.531 -0.688 12.834 hybrid contribution -0.570 0.808 0.460 1.090 sum 7.999 -8.723 -0.228 11.837 Atomic orbital electron populations 1.70198 1.09540 1.28966 1.36219 1.27004 0.95534 1.04972 0.91261 0.84954 0.79480 0.75316 0.78467 1.16687 1.19240 1.19642 1.21396 0.94704 0.89249 1.54240 0.89172 1.18603 0.86767 0.83033 0.76509 1.90648 1.15444 1.86622 1.56038 1.48786 1.07715 1.02624 1.79024 1.22325 0.79860 0.99136 1.00603 1.22801 0.98922 0.92030 1.01234 1.22752 0.91980 0.96214 1.04289 1.22709 0.97643 0.88925 0.91814 0.89024 1.21825 0.79910 0.73179 0.88021 1.93088 1.73174 1.95083 1.55958 1.93116 1.87639 1.38843 1.96972 1.93311 1.60648 1.66016 1.96797 0.91546 0.92536 0.90718 0.86196 0.89589 0.89339 0.86184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.40 11.83 21.83 0.26 -50.14 15 2 C 0.03 1.53 5.50 85.30 0.47 2.00 15 3 Si 1.00 40.75 29.56 68.60 2.03 42.78 15 4 H -0.24 -9.09 7.11 99.48 0.71 -8.38 15 5 H -0.27 -10.48 7.11 99.48 0.71 -9.77 15 6 H -0.27 -10.80 7.11 99.48 0.71 -10.09 15 7 C -0.56 -31.49 8.98 24.83 0.22 -31.27 15 8 H 0.09 4.54 6.64 -2.91 -0.02 4.52 15 9 C 0.54 31.56 7.50 86.36 0.65 32.21 15 10 O -0.60 -40.21 12.46 -4.29 -0.05 -40.26 15 11 N -0.64 -28.82 2.96 -793.10 -2.35 -31.17 15 12 C 0.10 3.40 6.52 86.86 0.57 3.97 15 13 C -0.11 -2.42 7.09 31.98 0.23 -2.19 15 14 C -0.11 -2.73 6.17 31.78 0.20 -2.54 15 15 C 0.10 3.62 2.97 45.34 0.13 3.76 15 16 H 0.09 3.51 8.14 -2.38 -0.02 3.49 15 17 C 0.43 17.67 2.72 71.98 0.20 17.86 15 18 F -0.19 -7.88 16.53 44.97 0.74 -7.13 15 19 F -0.18 -6.49 17.06 44.97 0.77 -5.72 15 20 F -0.19 -9.87 14.07 44.97 0.63 -9.24 15 21 H 0.27 15.29 8.29 -92.71 -0.77 14.52 15 22 H 0.06 1.82 8.14 -2.39 -0.02 1.80 15 23 H 0.07 2.49 7.15 -2.39 -0.02 2.47 15 24 H 0.12 1.73 8.14 -2.39 -0.02 1.71 15 25 H 0.09 1.73 8.14 -2.38 -0.02 1.71 15 26 H 0.09 2.00 7.36 -2.39 -0.02 1.98 15 27 H 0.12 2.10 8.14 -2.39 -0.02 2.08 15 Total: -1.00 -76.95 243.38 5.88 -71.07 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: 1.20 Total: 6.02 kcal Atomic # 6 Polarization: 21.13 SS G_CDS: 2.66 Total: 23.79 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -2.09 Total: -81.30 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -0.05 Total: -40.26 kcal Atomic # 9 Polarization: -24.24 SS G_CDS: 2.14 Total: -22.10 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -76.95 5.88 -71.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913019499.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.854 kcal (2) G-P(sol) polarization free energy of solvation -76.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds