Wall clock time and date at job start Sun Mar 29 2020 22:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47364 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46870 * 300.00173 * 3 2 1 6 6 H 1.48508 * 109.46883 * 59.99983 * 3 2 1 7 7 C 1.37884 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46919 * 179.97438 * 9 7 2 11 11 O 1.45206 * 109.47129 * 179.97438 * 10 9 7 12 12 C 1.34693 * 116.99654 * 180.02562 * 11 10 9 13 13 O 1.21413 * 120.00478 * 359.97438 * 12 11 10 14 14 C 1.48083 * 119.99549 * 180.02562 * 12 11 10 15 15 C 1.36043 * 119.77244 * 179.97438 * 14 12 11 16 16 C 1.42019 * 119.02768 * 179.97438 * 15 14 12 17 17 O 1.22187 * 120.69037 * 179.97438 * 16 15 14 18 18 C 1.41261 * 118.62018 * 0.02562 * 16 15 14 19 19 C 1.35381 * 119.45028 * 0.02562 * 18 16 15 20 20 N 1.34745 * 120.96075 * 359.71711 * 19 18 16 21 21 H 0.96996 * 119.25924 * 180.30258 * 20 19 18 22 22 H 0.96991 * 120.00238 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47237 * 60.00043 * 9 7 2 24 24 H 1.09004 * 109.47662 * 299.99884 * 9 7 2 25 25 H 1.09004 * 109.46930 * 60.00101 * 10 9 7 26 26 H 1.09000 * 109.47312 * 300.00045 * 10 9 7 27 27 H 1.08001 * 120.48404 * 359.97438 * 15 14 12 28 28 H 1.08002 * 120.27224 * 180.02562 * 18 16 15 29 29 H 1.08000 * 119.51930 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 8 1.5192 -4.9196 -0.0033 12 6 2.2529 -6.0492 -0.0036 13 8 3.4653 -5.9857 -0.0040 14 6 1.5805 -7.3686 -0.0048 15 6 2.3260 -8.5066 -0.0057 16 6 1.6648 -9.7635 -0.0062 17 8 2.3044 -10.8046 -0.0075 18 6 0.2523 -9.7851 -0.0063 19 6 -0.4312 -8.6165 -0.0064 20 7 0.2162 -7.4347 -0.0007 21 1 -0.2982 -6.6124 0.0035 22 1 -0.4850 0.8399 0.0004 23 1 0.6247 -2.5563 -0.8920 24 1 0.6240 -2.5576 0.8880 25 1 2.8719 -3.6051 0.8873 26 1 2.8719 -3.6036 -0.8927 27 1 3.4047 -8.4550 -0.0060 28 1 -0.2778 -10.7260 -0.0062 29 1 -1.5111 -8.6316 -0.0060 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924133390.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:48 Heat of formation + Delta-G solvation = -97.928507 kcal Electronic energy + Delta-G solvation = -15670.225884 eV Core-core repulsion = 12751.829328 eV Total energy + Delta-G solvation = -2918.396556 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.35780 -39.84889 -37.74112 -36.59099 -33.54118 -32.28470 -31.46836 -30.44069 -26.05650 -24.50185 -23.63766 -21.63461 -20.96904 -19.35429 -18.03594 -16.99511 -16.75929 -16.47390 -16.06743 -15.40458 -15.02319 -14.86623 -14.61968 -13.62225 -13.34104 -13.15444 -12.91766 -12.77269 -12.50063 -11.51761 -11.27713 -11.01231 -10.95539 -10.67632 -10.08197 -9.91103 -9.87880 -9.57845 -9.44822 -8.58919 -8.30072 -6.24925 -4.29840 0.40500 1.08021 2.34441 2.48470 2.63846 3.18907 3.27085 3.31466 3.60842 4.24624 4.32301 4.58652 4.66251 4.86573 5.12557 5.17228 5.40932 5.76083 5.83980 5.85100 6.19431 6.37626 6.42340 6.50038 6.65123 7.32192 7.40235 7.61740 7.76962 7.91783 8.05882 8.75564 9.35824 10.86480 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.062552 B = 0.004223 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.521243 B = 6628.874622 C = 7055.948222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.901 3.099 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.529 4.529 8 H 0.061 0.939 9 C 0.025 3.975 10 C 0.076 3.924 11 O -0.356 6.356 12 C 0.496 3.504 13 O -0.479 6.479 14 C 0.141 3.859 15 C -0.202 4.202 16 C 0.391 3.609 17 O -0.522 6.522 18 C -0.301 4.301 19 C 0.156 3.844 20 N -0.569 5.569 21 H 0.433 0.567 22 H 0.264 0.736 23 H 0.029 0.971 24 H 0.029 0.971 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.162 0.838 28 H 0.151 0.849 29 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.838 -12.639 0.000 13.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.567 4.567 8 H 0.079 0.921 9 C -0.012 4.012 10 C 0.004 3.996 11 O -0.273 6.273 12 C 0.337 3.663 13 O -0.365 6.365 14 C 0.032 3.968 15 C -0.228 4.228 16 C 0.283 3.717 17 O -0.409 6.409 18 C -0.326 4.326 19 C 0.026 3.974 20 N -0.178 5.178 21 H 0.271 0.729 22 H 0.074 0.926 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.179 0.821 28 H 0.169 0.831 29 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.250 -12.956 0.000 13.357 hybrid contribution 0.194 1.466 -0.002 1.479 sum -3.056 -11.490 -0.002 11.890 Atomic orbital electron populations 1.69961 1.06123 1.27107 1.49563 1.24983 0.94948 0.99512 0.94647 0.86391 0.80071 0.82933 0.77799 1.19521 1.20755 1.20748 1.20978 0.93292 0.89890 1.52544 0.92061 1.19208 0.94153 0.88893 0.98964 1.23869 0.96603 0.77432 1.01678 1.86520 1.42380 1.15911 1.82480 1.20816 0.86065 0.84765 0.74691 1.90881 1.14108 1.87384 1.44142 1.19516 0.83242 0.92730 1.01279 1.23095 1.02762 0.91803 1.05141 1.17219 0.89249 0.88538 0.76698 1.90807 1.69595 1.34766 1.45683 1.22430 0.96631 0.98266 1.15272 1.21828 0.98753 0.84362 0.92445 1.41120 1.05100 1.10358 1.61213 0.72862 0.92633 0.95245 0.95231 0.91620 0.91611 0.82062 0.83133 0.80932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.94 13.29 55.43 0.74 -24.21 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 15 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 7 C -0.53 -13.95 9.11 -34.44 -0.31 -14.26 15 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 15 9 C 0.02 0.59 5.35 -27.88 -0.15 0.44 15 10 C 0.08 1.49 5.41 37.16 0.20 1.69 15 11 O -0.36 -5.88 9.55 -40.47 -0.39 -6.26 15 12 C 0.50 7.59 7.95 34.77 0.28 7.87 15 13 O -0.48 -8.60 16.07 -19.20 -0.31 -8.91 15 14 C 0.14 1.72 6.77 -82.49 -0.56 1.17 15 15 C -0.20 -2.71 9.56 -38.92 -0.37 -3.09 15 16 C 0.39 5.50 6.78 -36.99 -0.25 5.25 15 17 O -0.52 -9.36 17.89 4.75 0.08 -9.28 15 18 C -0.30 -2.97 10.00 -39.45 -0.39 -3.36 15 19 C 0.16 1.06 11.13 -17.29 -0.19 0.87 15 20 N -0.57 -4.90 5.25 -9.83 -0.05 -4.95 15 21 H 0.43 3.04 8.19 -40.82 -0.33 2.70 15 22 H 0.26 6.96 8.31 -40.82 -0.34 6.62 15 23 H 0.03 0.73 8.14 -51.93 -0.42 0.30 15 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 15 26 H 0.07 1.28 8.14 -51.93 -0.42 0.86 15 27 H 0.16 2.25 7.58 -52.49 -0.40 1.85 15 28 H 0.15 1.25 8.06 -52.49 -0.42 0.83 15 29 H 0.17 0.38 8.06 -52.49 -0.42 -0.05 15 LS Contribution 270.92 15.07 4.08 4.08 Total: -1.00 -32.51 270.92 -5.52 -38.03 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -2.81 Total: -2.08 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -1.85 Total: -1.87 kcal Atomic # 7 Polarization: -29.84 SS G_CDS: 0.68 Total: -29.16 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.61 Total: -24.46 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.51 -5.52 -38.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924133390.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.899 kcal (2) G-P(sol) polarization free energy of solvation -32.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds