Wall clock time and date at job start Sun Mar 29 2020 22:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47364 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46870 * 300.00173 * 3 2 1 6 6 H 1.48508 * 109.46883 * 59.99983 * 3 2 1 7 7 C 1.37884 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46919 * 179.97438 * 9 7 2 11 11 O 1.45206 * 109.47129 * 179.97438 * 10 9 7 12 12 C 1.34693 * 116.99654 * 180.02562 * 11 10 9 13 13 O 1.21413 * 120.00478 * 359.97438 * 12 11 10 14 14 C 1.48083 * 119.99549 * 180.02562 * 12 11 10 15 15 C 1.36043 * 119.77244 * 179.97438 * 14 12 11 16 16 C 1.42019 * 119.02768 * 179.97438 * 15 14 12 17 17 O 1.22187 * 120.69037 * 179.97438 * 16 15 14 18 18 C 1.41261 * 118.62018 * 0.02562 * 16 15 14 19 19 C 1.35381 * 119.45028 * 0.02562 * 18 16 15 20 20 N 1.34745 * 120.96075 * 359.71711 * 19 18 16 21 21 H 0.96996 * 119.25924 * 180.30258 * 20 19 18 22 22 H 0.96991 * 120.00238 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47237 * 60.00043 * 9 7 2 24 24 H 1.09004 * 109.47662 * 299.99884 * 9 7 2 25 25 H 1.09004 * 109.46930 * 60.00101 * 10 9 7 26 26 H 1.09000 * 109.47312 * 300.00045 * 10 9 7 27 27 H 1.08001 * 120.48404 * 359.97438 * 15 14 12 28 28 H 1.08002 * 120.27224 * 180.02562 * 18 16 15 29 29 H 1.08000 * 119.51930 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 8 1.5192 -4.9196 -0.0033 12 6 2.2529 -6.0492 -0.0036 13 8 3.4653 -5.9857 -0.0040 14 6 1.5805 -7.3686 -0.0048 15 6 2.3260 -8.5066 -0.0057 16 6 1.6648 -9.7635 -0.0062 17 8 2.3044 -10.8046 -0.0075 18 6 0.2523 -9.7851 -0.0063 19 6 -0.4312 -8.6165 -0.0064 20 7 0.2162 -7.4347 -0.0007 21 1 -0.2982 -6.6124 0.0035 22 1 -0.4850 0.8399 0.0004 23 1 0.6247 -2.5563 -0.8920 24 1 0.6240 -2.5576 0.8880 25 1 2.8719 -3.6051 0.8873 26 1 2.8719 -3.6036 -0.8927 27 1 3.4047 -8.4550 -0.0060 28 1 -0.2778 -10.7260 -0.0062 29 1 -1.5111 -8.6316 -0.0060 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924133390.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:48 Heat of formation + Delta-G solvation = -119.408884 kcal Electronic energy + Delta-G solvation = -15671.157344 eV Core-core repulsion = 12751.829328 eV Total energy + Delta-G solvation = -2919.328015 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.42606 -41.08192 -38.78456 -38.01947 -35.48301 -33.28470 -32.53423 -32.15087 -27.61380 -25.98262 -24.48793 -23.18806 -22.39513 -20.37647 -19.17922 -18.43813 -18.05725 -17.85215 -17.59008 -16.62411 -16.29139 -16.10495 -15.77410 -15.13172 -14.76149 -14.39911 -14.22405 -13.81951 -13.68157 -13.24693 -13.12196 -12.68472 -12.65936 -12.23021 -11.68715 -11.59940 -11.42484 -10.93525 -10.64502 -10.61766 -9.25217 -8.28671 -6.40193 -0.70512 0.31870 1.11007 1.26153 1.41141 1.43456 1.55226 1.70320 2.38442 2.64054 3.07139 3.25307 3.64339 3.85144 3.97710 4.15702 4.19285 4.33551 4.54341 4.65866 4.97854 5.02288 5.34474 5.40545 5.46856 5.54725 5.71360 5.95549 6.05291 6.31286 6.73454 6.92847 7.29711 8.83502 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.062552 B = 0.004223 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.521243 B = 6628.874622 C = 7055.948222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.010 3.990 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.549 4.549 8 H 0.064 0.936 9 C 0.031 3.969 10 C 0.090 3.910 11 O -0.349 6.349 12 C 0.501 3.499 13 O -0.506 6.506 14 C 0.154 3.846 15 C -0.215 4.215 16 C 0.374 3.626 17 O -0.584 6.584 18 C -0.315 4.315 19 C 0.194 3.806 20 N -0.550 5.550 21 H 0.446 0.554 22 H 0.268 0.732 23 H 0.014 0.986 24 H 0.014 0.986 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.145 0.855 28 H 0.169 0.831 29 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.363 -12.148 0.001 13.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.190 4.190 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.587 4.587 8 H 0.082 0.918 9 C -0.006 4.006 10 C 0.018 3.982 11 O -0.265 6.265 12 C 0.344 3.656 13 O -0.394 6.394 14 C 0.043 3.957 15 C -0.242 4.242 16 C 0.271 3.729 17 O -0.476 6.476 18 C -0.339 4.339 19 C 0.063 3.937 20 N -0.160 5.160 21 H 0.287 0.713 22 H 0.076 0.924 23 H 0.032 0.968 24 H 0.032 0.968 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.163 0.837 28 H 0.186 0.814 29 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -4.809 -12.445 0.002 13.342 hybrid contribution 0.576 1.340 -0.002 1.459 sum -4.233 -11.105 -0.001 11.884 Atomic orbital electron populations 1.70056 1.07546 1.28171 1.50441 1.25850 0.95801 1.03075 0.94226 0.85365 0.78963 0.78613 0.77921 1.18852 1.20253 1.20239 1.21393 0.93735 0.91297 1.52305 0.91826 1.19000 0.94297 0.89938 0.97344 1.23390 0.95310 0.77705 1.01817 1.86482 1.41829 1.15427 1.82762 1.21189 0.85814 0.85090 0.73522 1.90879 1.15491 1.87702 1.45314 1.19002 0.84810 0.90284 1.01566 1.22989 1.02409 0.92377 1.06376 1.17719 0.91221 0.87683 0.76294 1.90778 1.70929 1.36131 1.49766 1.22473 0.94393 1.00528 1.16505 1.22680 1.00989 0.82110 0.87906 1.41336 1.03651 1.12038 1.58946 0.71307 0.92352 0.96791 0.96774 0.91507 0.91499 0.83712 0.81358 0.74585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.63 13.29 21.45 0.28 -51.34 15 2 C 0.01 0.53 5.46 84.66 0.46 0.99 15 3 Si 0.97 41.41 29.54 68.60 2.03 43.44 15 4 H -0.26 -10.95 7.11 99.48 0.71 -10.24 15 5 H -0.28 -11.58 7.11 99.48 0.71 -10.88 15 6 H -0.28 -11.57 7.11 99.48 0.71 -10.87 15 7 C -0.55 -28.81 9.11 25.60 0.23 -28.58 15 8 H 0.06 3.23 7.74 -2.91 -0.02 3.20 15 9 C 0.03 1.49 5.35 29.85 0.16 1.64 15 10 C 0.09 3.48 5.41 71.98 0.39 3.87 15 11 O -0.35 -11.01 9.55 -56.02 -0.54 -11.55 15 12 C 0.50 14.86 7.95 70.44 0.56 15.42 15 13 O -0.51 -18.17 16.07 20.12 0.32 -17.85 15 14 C 0.15 3.53 6.77 40.51 0.27 3.80 15 15 C -0.22 -5.83 9.56 22.70 0.22 -5.61 15 16 C 0.37 10.55 6.78 23.95 0.16 10.71 15 17 O -0.58 -21.99 17.89 -5.93 -0.11 -22.10 15 18 C -0.32 -5.38 10.00 22.35 0.22 -5.16 15 19 C 0.19 1.68 11.13 83.59 0.93 2.61 15 20 N -0.55 -7.45 5.25 -185.03 -0.97 -8.42 15 21 H 0.45 4.32 8.19 -92.71 -0.76 3.56 15 22 H 0.27 14.01 8.31 -92.71 -0.77 13.24 15 23 H 0.01 0.69 8.14 -2.38 -0.02 0.67 15 24 H 0.01 0.69 8.14 -2.39 -0.02 0.67 15 25 H 0.07 2.57 8.14 -2.38 -0.02 2.55 15 26 H 0.07 2.57 8.14 -2.39 -0.02 2.55 15 27 H 0.15 4.32 7.58 -2.91 -0.02 4.29 15 28 H 0.17 2.30 8.06 -2.91 -0.02 2.28 15 29 H 0.24 -0.79 8.06 -2.91 -0.02 -0.82 15 Total: -1.00 -72.95 270.92 5.06 -67.90 By element: Atomic # 1 Polarization: -0.21 SS G_CDS: 0.42 Total: 0.22 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 3.61 Total: -0.30 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.69 Total: -59.76 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -0.32 Total: -51.49 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -72.95 5.06 -67.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924133390.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.510 kcal (2) G-P(sol) polarization free energy of solvation -72.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds