Wall clock time and date at job start Sun Mar 29 2020 21:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99933 * 2 1 4 4 H 1.48498 * 109.47265 * 269.99472 * 3 2 1 5 5 H 1.48495 * 109.47389 * 30.00108 * 3 2 1 6 6 H 1.48501 * 109.46734 * 149.99998 * 3 2 1 7 7 C 1.37876 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99693 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00174 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47216 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47295 * 179.97438 * 10 9 7 12 12 C 1.46895 * 111.00118 * 179.97438 * 11 10 9 13 13 H 1.08998 * 110.44787 * 324.07365 * 12 11 10 14 14 C 1.54816 * 110.40044 * 86.45773 * 12 11 10 15 15 H 1.09001 * 113.35182 * 352.45344 * 14 12 11 16 16 N 1.47785 * 107.97674 * 226.73094 * 14 12 11 17 17 C 1.47331 * 108.45634 * 275.16347 * 16 14 12 18 18 C 1.54318 * 107.12798 * 358.99473 * 17 16 14 19 19 H 1.09000 * 114.07437 * 212.46066 * 18 17 16 20 20 C 1.54837 * 107.63125 * 85.79827 * 18 17 16 21 21 C 1.55910 * 104.60854 * 254.75867 * 20 18 17 22 22 H 1.08996 * 116.02117 * 197.73347 * 21 20 18 23 23 C 1.56761 * 100.70019 * 324.15483 * 21 20 18 24 24 C 1.56341 * 96.53283 * 53.46196 * 23 21 20 25 25 H 1.08998 * 117.17989 * 180.02562 * 24 23 21 26 26 H 0.97005 * 120.00042 * 0.02562 * 1 2 3 27 27 H 1.08991 * 109.47701 * 59.99833 * 9 7 2 28 28 H 1.09003 * 109.47107 * 299.99571 * 9 7 2 29 29 H 1.08999 * 109.47527 * 59.99667 * 10 9 7 30 30 H 1.08998 * 109.47257 * 299.99754 * 10 9 7 31 31 H 1.00903 * 110.99437 * 56.04467 * 11 10 9 32 32 H 1.00901 * 111.00150 * 37.35518 * 16 14 12 33 33 H 1.08995 * 109.90825 * 118.36820 * 17 16 14 34 34 H 1.09004 * 109.90457 * 239.62275 * 17 16 14 35 35 H 1.08999 * 110.40988 * 13.53552 * 20 18 17 36 36 H 1.09001 * 110.41167 * 135.85714 * 20 18 17 37 37 H 1.09001 * 111.94851 * 296.61138 * 23 21 20 38 38 H 1.08999 * 111.94431 * 170.31195 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5107 -4.9343 0.0024 12 6 2.4351 -6.0759 0.0031 13 1 3.3175 -5.8517 -0.5962 14 6 2.8444 -6.4381 1.4516 15 1 2.4919 -5.7204 2.1924 16 7 4.3111 -6.6170 1.4800 17 6 4.6204 -7.9988 1.0730 18 6 3.2750 -8.7060 0.8064 19 1 3.2776 -9.7702 1.0424 20 6 2.8679 -8.4034 -0.6565 21 6 1.7219 -7.3531 -0.5366 22 1 1.0948 -7.2267 -1.4191 23 6 1.0007 -7.8562 0.7612 24 6 2.2698 -7.8755 1.6739 25 1 2.1349 -8.1939 2.7076 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 2.8712 -3.6040 0.8922 30 1 2.8725 -3.6048 -0.8877 31 1 0.8746 -4.9849 -0.7792 32 1 4.7684 -5.9511 0.8754 33 1 5.2225 -7.9922 0.1645 34 1 5.1563 -8.5101 1.8728 35 1 3.7107 -7.9851 -1.2068 36 1 2.5070 -9.3082 -1.1456 37 1 0.5769 -8.8521 0.6317 38 1 0.2552 -7.1440 1.1150 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925635539.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:06 Heat of formation + Delta-G solvation = 4.076132 kcal Electronic energy + Delta-G solvation = -17179.760560 eV Core-core repulsion = 14635.172107 eV Total energy + Delta-G solvation = -2544.588452 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.33735 -35.56703 -33.95319 -32.83873 -30.69345 -29.24631 -27.82665 -25.80496 -24.63975 -22.93806 -20.70811 -20.05007 -19.99324 -18.84619 -16.66611 -16.19612 -15.68049 -15.25350 -14.60699 -14.43258 -14.12940 -13.38283 -12.96711 -12.74080 -12.36033 -12.15971 -12.05239 -11.66617 -11.36710 -11.08301 -10.95370 -10.86078 -10.76799 -10.67349 -10.55094 -10.51744 -10.21324 -9.95992 -9.32858 -9.11930 -8.38653 -8.33007 -7.79294 -5.98746 -4.01223 3.32863 3.39132 3.42843 4.13640 4.26044 4.42350 4.46148 4.69938 4.81389 5.01052 5.04936 5.20009 5.22900 5.33537 5.37201 5.37642 5.52340 5.60369 5.68546 5.81568 5.90096 5.99218 5.99815 6.11366 6.21553 6.30415 6.36199 6.40072 6.50445 6.95493 6.99767 7.37260 7.53861 7.73636 7.84280 7.96893 8.09363 8.44783 9.05981 9.62605 11.12691 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.045867 B = 0.005077 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.315047 B = 5513.590792 C = 5808.055450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.067 3.933 11 N -0.680 5.680 12 C 0.062 3.938 13 H 0.038 0.962 14 C 0.090 3.910 15 H 0.109 0.891 16 N -0.682 5.682 17 C 0.052 3.948 18 C -0.115 4.115 19 H 0.090 0.910 20 C -0.118 4.118 21 C -0.106 4.106 22 H 0.098 0.902 23 C -0.113 4.113 24 C -0.099 4.099 25 H 0.101 0.899 26 H 0.260 0.740 27 H 0.012 0.988 28 H 0.025 0.975 29 H 0.059 0.941 30 H 0.012 0.988 31 H 0.336 0.664 32 H 0.338 0.662 33 H 0.047 0.953 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.132 -18.212 -0.151 18.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.062 4.062 11 N -0.311 5.311 12 C -0.050 4.050 13 H 0.056 0.944 14 C -0.020 4.020 15 H 0.127 0.873 16 N -0.312 5.312 17 C -0.077 4.077 18 C -0.134 4.134 19 H 0.108 0.892 20 C -0.156 4.156 21 C -0.125 4.125 22 H 0.116 0.884 23 C -0.150 4.150 24 C -0.118 4.118 25 H 0.120 0.880 26 H 0.070 0.930 27 H 0.031 0.969 28 H 0.044 0.956 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.153 0.847 32 H 0.156 0.844 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.994 -18.192 1.241 18.905 hybrid contribution 0.699 1.073 -2.009 2.382 sum 5.692 -17.118 -0.768 18.056 Atomic orbital electron populations 1.69972 1.06037 1.26571 1.50705 1.24994 0.94829 0.99195 0.95293 0.86594 0.79889 0.83485 0.78034 1.20741 1.21171 1.19856 1.21175 0.92964 0.91042 1.50824 0.92816 1.19054 0.93988 0.90436 0.97642 1.22192 0.96957 0.88543 0.98461 1.60616 1.19357 1.01720 1.49429 1.23544 0.94611 0.90803 0.96045 0.94383 1.23523 0.85959 0.96590 0.95893 0.87281 1.61872 1.08809 1.03784 1.56708 1.22672 0.96060 0.90015 0.98955 1.23296 0.95392 0.99424 0.95273 0.89211 1.22825 0.98222 0.98747 0.95837 1.23663 0.96142 0.94688 0.97988 0.88414 1.23289 0.96862 1.00543 0.94327 1.23994 0.94845 0.94638 0.98333 0.88035 0.93006 0.96934 0.95637 0.92293 0.96980 0.84652 0.84436 0.93428 0.91296 0.91968 0.91744 0.91715 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.03 0.69 5.23 -27.88 -0.15 0.54 16 10 C 0.07 1.41 5.47 -3.82 -0.02 1.39 16 11 N -0.68 -11.94 6.30 -104.08 -0.66 -12.59 16 12 C 0.06 0.90 2.14 -65.19 -0.14 0.76 16 13 H 0.04 0.59 6.87 -51.93 -0.36 0.23 16 14 C 0.09 1.28 4.27 -64.45 -0.28 1.01 16 15 H 0.11 1.82 8.08 -51.93 -0.42 1.41 16 16 N -0.68 -9.13 7.16 -102.13 -0.73 -9.86 16 17 C 0.05 0.58 6.87 -2.90 -0.02 0.56 16 18 C -0.11 -1.19 4.24 -87.02 -0.37 -1.56 16 19 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 20 C -0.12 -1.23 5.77 -24.21 -0.14 -1.37 16 21 C -0.11 -1.27 4.62 -85.47 -0.40 -1.66 16 22 H 0.10 1.13 8.12 -51.93 -0.42 0.70 16 23 C -0.11 -1.31 6.44 -22.90 -0.15 -1.45 16 24 C -0.10 -1.18 5.08 -85.06 -0.43 -1.61 16 25 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.27 8.12 -51.93 -0.42 0.85 16 30 H 0.01 0.25 8.08 -51.93 -0.42 -0.17 16 31 H 0.34 5.73 8.45 -39.29 -0.33 5.40 16 32 H 0.34 4.56 8.08 -39.29 -0.32 4.24 16 33 H 0.05 0.49 7.38 -51.93 -0.38 0.10 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.67 6.95 -51.93 -0.36 0.31 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 293.64 15.07 4.43 4.43 Total: -1.00 -29.66 293.64 -10.10 -39.76 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.36 Total: 4.90 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -2.50 Total: -17.07 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.65 Total: -48.85 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.66 -10.10 -39.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925635539.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.832 kcal (2) G-P(sol) polarization free energy of solvation -29.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds