Wall clock time and date at job start Sun Mar 29 2020 21:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99933 * 2 1 4 4 H 1.48498 * 109.47265 * 269.99472 * 3 2 1 5 5 H 1.48495 * 109.47389 * 30.00108 * 3 2 1 6 6 H 1.48501 * 109.46734 * 149.99998 * 3 2 1 7 7 C 1.37876 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99693 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00174 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47216 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47295 * 179.97438 * 10 9 7 12 12 C 1.46895 * 111.00118 * 179.97438 * 11 10 9 13 13 H 1.08998 * 110.44787 * 324.07365 * 12 11 10 14 14 C 1.54816 * 110.40044 * 86.45773 * 12 11 10 15 15 H 1.09001 * 113.35182 * 352.45344 * 14 12 11 16 16 N 1.47785 * 107.97674 * 226.73094 * 14 12 11 17 17 C 1.47331 * 108.45634 * 275.16347 * 16 14 12 18 18 C 1.54318 * 107.12798 * 358.99473 * 17 16 14 19 19 H 1.09000 * 114.07437 * 212.46066 * 18 17 16 20 20 C 1.54837 * 107.63125 * 85.79827 * 18 17 16 21 21 C 1.55910 * 104.60854 * 254.75867 * 20 18 17 22 22 H 1.08996 * 116.02117 * 197.73347 * 21 20 18 23 23 C 1.56761 * 100.70019 * 324.15483 * 21 20 18 24 24 C 1.56341 * 96.53283 * 53.46196 * 23 21 20 25 25 H 1.08998 * 117.17989 * 180.02562 * 24 23 21 26 26 H 0.97005 * 120.00042 * 0.02562 * 1 2 3 27 27 H 1.08991 * 109.47701 * 59.99833 * 9 7 2 28 28 H 1.09003 * 109.47107 * 299.99571 * 9 7 2 29 29 H 1.08999 * 109.47527 * 59.99667 * 10 9 7 30 30 H 1.08998 * 109.47257 * 299.99754 * 10 9 7 31 31 H 1.00903 * 110.99437 * 56.04467 * 11 10 9 32 32 H 1.00901 * 111.00150 * 37.35518 * 16 14 12 33 33 H 1.08995 * 109.90825 * 118.36820 * 17 16 14 34 34 H 1.09004 * 109.90457 * 239.62275 * 17 16 14 35 35 H 1.08999 * 110.40988 * 13.53552 * 20 18 17 36 36 H 1.09001 * 110.41167 * 135.85714 * 20 18 17 37 37 H 1.09001 * 111.94851 * 296.61138 * 23 21 20 38 38 H 1.08999 * 111.94431 * 170.31195 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5107 -4.9343 0.0024 12 6 2.4351 -6.0759 0.0031 13 1 3.3175 -5.8517 -0.5962 14 6 2.8444 -6.4381 1.4516 15 1 2.4919 -5.7204 2.1924 16 7 4.3111 -6.6170 1.4800 17 6 4.6204 -7.9988 1.0730 18 6 3.2750 -8.7060 0.8064 19 1 3.2776 -9.7702 1.0424 20 6 2.8679 -8.4034 -0.6565 21 6 1.7219 -7.3531 -0.5366 22 1 1.0948 -7.2267 -1.4191 23 6 1.0007 -7.8562 0.7612 24 6 2.2698 -7.8755 1.6739 25 1 2.1349 -8.1939 2.7076 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 2.8712 -3.6040 0.8922 30 1 2.8725 -3.6048 -0.8877 31 1 0.8746 -4.9849 -0.7792 32 1 4.7684 -5.9511 0.8754 33 1 5.2225 -7.9922 0.1645 34 1 5.1563 -8.5101 1.8728 35 1 3.7107 -7.9851 -1.2068 36 1 2.5070 -9.3082 -1.1456 37 1 0.5769 -8.8521 0.6317 38 1 0.2552 -7.1440 1.1150 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925635539.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:05 Heat of formation + Delta-G solvation = -16.757062 kcal Electronic energy + Delta-G solvation = -17180.663955 eV Core-core repulsion = 14635.172107 eV Total energy + Delta-G solvation = -2545.491847 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.33016 -37.14950 -35.18452 -34.67495 -32.11509 -30.57583 -29.11159 -26.87620 -26.30337 -24.33934 -22.46815 -21.14319 -21.02747 -19.81271 -18.54426 -17.53787 -16.79864 -16.64729 -16.27893 -15.85466 -15.39865 -14.72621 -14.50408 -14.05627 -13.82204 -13.46918 -13.27778 -12.98311 -12.90769 -12.69135 -12.44543 -12.25164 -12.02804 -11.84389 -11.66004 -11.59664 -11.51185 -11.41952 -11.37652 -10.92751 -10.58196 -9.50968 -9.17599 -8.21970 -6.33690 1.38956 1.40763 1.52040 2.39239 3.10041 3.11493 3.25386 3.46644 3.58976 3.76421 3.98839 4.07932 4.17296 4.32891 4.42108 4.44054 4.45551 4.55491 4.59572 4.71989 4.77609 4.91864 5.01451 5.03656 5.07982 5.15506 5.19774 5.22737 5.37133 5.42451 5.47005 5.64462 5.75906 5.94288 6.13973 6.25586 6.38823 6.54704 6.83132 7.35705 8.90189 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.045867 B = 0.005077 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.315047 B = 5513.590792 C = 5808.055450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.034 3.966 10 C 0.089 3.911 11 N -0.683 5.683 12 C 0.063 3.937 13 H 0.032 0.968 14 C 0.084 3.916 15 H 0.075 0.925 16 N -0.693 5.693 17 C 0.050 3.950 18 C -0.105 4.105 19 H 0.115 0.885 20 C -0.112 4.112 21 C -0.105 4.105 22 H 0.104 0.896 23 C -0.108 4.108 24 C -0.099 4.099 25 H 0.107 0.893 26 H 0.264 0.736 27 H -0.008 1.008 28 H -0.007 1.007 29 H 0.051 0.949 30 H 0.013 0.987 31 H 0.338 0.662 32 H 0.335 0.665 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.298 -19.637 -0.648 20.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.003 4.003 10 C -0.040 4.040 11 N -0.315 5.315 12 C -0.049 4.049 13 H 0.050 0.950 14 C -0.026 4.026 15 H 0.093 0.907 16 N -0.322 5.322 17 C -0.079 4.079 18 C -0.123 4.123 19 H 0.133 0.867 20 C -0.150 4.150 21 C -0.123 4.123 22 H 0.122 0.878 23 C -0.146 4.146 24 C -0.117 4.117 25 H 0.125 0.875 26 H 0.073 0.927 27 H 0.010 0.990 28 H 0.012 0.988 29 H 0.070 0.930 30 H 0.031 0.969 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.169 -19.644 0.743 20.603 hybrid contribution 0.314 1.500 -1.826 2.384 sum 6.484 -18.144 -1.082 19.298 Atomic orbital electron populations 1.70104 1.07809 1.27844 1.51332 1.25962 0.95766 1.03334 0.94518 0.85424 0.78613 0.78307 0.78563 1.19594 1.20564 1.18877 1.21595 0.93426 0.92346 1.51099 0.92411 1.18893 0.94217 0.92233 0.94988 1.21739 0.95476 0.88680 0.98058 1.60519 1.19888 1.01335 1.49709 1.23633 0.94005 0.90667 0.96576 0.94985 1.23401 0.86905 0.97602 0.94676 0.90728 1.61839 1.08075 1.05216 1.57112 1.22778 0.96829 0.88590 0.99723 1.23327 0.93940 1.00391 0.94689 0.86673 1.22805 0.97304 0.98875 0.96036 1.23704 0.96839 0.93471 0.98319 0.87772 1.23256 0.96259 1.01224 0.93827 1.24026 0.95370 0.93189 0.99163 0.87488 0.92684 0.99008 0.98812 0.93044 0.96866 0.84377 0.84863 0.92366 0.90575 0.92179 0.89478 0.89316 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 2 C 0.00 0.13 5.46 84.66 0.46 0.60 16 3 Si 0.97 44.97 29.54 68.60 2.03 46.99 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.55 -31.97 9.11 25.60 0.23 -31.74 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.87 5.23 29.85 0.16 2.03 16 10 C 0.09 3.90 5.47 86.30 0.47 4.37 16 11 N -0.68 -24.63 6.30 -483.19 -3.04 -27.68 16 12 C 0.06 1.80 2.14 46.55 0.10 1.90 16 13 H 0.03 0.97 6.87 -2.39 -0.02 0.96 16 14 C 0.08 2.41 4.27 46.54 0.20 2.60 16 15 H 0.07 2.62 8.08 -2.39 -0.02 2.60 16 16 N -0.69 -18.13 7.16 -477.04 -3.42 -21.55 16 17 C 0.05 0.98 6.87 86.67 0.60 1.58 16 18 C -0.10 -1.83 4.24 -8.46 -0.04 -1.87 16 19 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 20 C -0.11 -1.97 5.77 32.23 0.19 -1.79 16 21 C -0.10 -2.31 4.62 -7.46 -0.03 -2.35 16 22 H 0.10 2.19 8.12 -2.39 -0.02 2.17 16 23 C -0.11 -2.31 6.44 33.07 0.21 -2.10 16 24 C -0.10 -2.18 5.08 -7.19 -0.04 -2.21 16 25 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 27 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 28 H -0.01 -0.40 8.14 -2.39 -0.02 -0.41 16 29 H 0.05 2.30 8.12 -2.39 -0.02 2.29 16 30 H 0.01 0.57 8.08 -2.39 -0.02 0.55 16 31 H 0.34 11.81 8.45 -89.69 -0.76 11.05 16 32 H 0.33 8.96 8.08 -89.69 -0.73 8.24 16 33 H 0.06 1.04 7.38 -2.39 -0.02 1.02 16 34 H 0.08 1.41 8.14 -2.38 -0.02 1.40 16 35 H 0.06 1.11 6.95 -2.39 -0.02 1.09 16 36 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -64.74 293.64 -2.08 -66.82 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -0.44 Total: 21.73 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: 2.51 Total: -28.97 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -6.18 Total: -106.57 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -64.74 -2.08 -66.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925635539.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.058 kcal (2) G-P(sol) polarization free energy of solvation -64.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds