Wall clock time and date at job start Sun Mar 29 2020 21:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.47280 * 111.00148 * 180.02562 * 11 10 9 13 13 H 1.10379 * 109.95930 * 325.69881 * 12 11 10 14 14 C 1.59920 * 113.47987 * 199.46251 * 12 11 10 15 15 H 1.09928 * 117.65415 * 66.54155 * 14 12 11 16 16 C 1.57921 * 106.38552 * 199.80817 * 14 12 11 17 17 C 1.56961 * 110.02807 * 67.01172 * 16 14 12 18 18 H 1.10337 * 115.37452 * 125.66403 * 17 16 14 19 19 C 1.57986 * 108.41407 * 256.77096 * 17 16 14 20 20 N 1.53079 * 106.39308 * 94.90412 * 19 17 16 21 21 C 1.43183 * 88.82164 * 324.30888 * 20 19 17 22 22 H 1.08009 * 83.82857 * 330.09443 * 21 20 19 23 23 C 1.59604 * 99.35048 * 0.69828 * 17 16 14 24 24 H 1.10215 * 121.17759 * 168.89510 * 23 17 16 25 25 C 1.56785 * 102.19412 * 33.49007 * 23 17 16 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 30 30 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 31 31 H 1.00900 * 110.99562 * 303.94873 * 11 10 9 32 32 H 1.09437 * 108.77462 * 186.28523 * 16 14 12 33 33 H 1.08687 * 110.03346 * 304.97974 * 16 14 12 34 34 H 1.09693 * 109.66602 * 212.14112 * 19 17 16 35 35 H 1.08502 * 112.13005 * 333.27925 * 19 17 16 36 36 H 1.00895 * 110.23392 * 213.60239 * 20 19 17 37 37 H 1.08771 * 112.54467 * 185.40092 * 25 23 17 38 38 H 1.09459 * 111.53932 * 60.51497 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 2.4373 -6.0789 -0.0212 13 1 3.3410 -5.8298 -0.6040 14 6 1.7639 -7.4421 -0.5167 15 1 1.4441 -7.5011 -1.5668 16 6 2.6816 -8.6117 0.0160 17 6 2.6137 -8.6773 1.5827 18 1 2.3368 -9.6591 2.0033 19 6 3.9360 -8.0397 2.1667 20 7 3.6119 -6.5747 2.4700 21 6 2.7696 -6.5521 1.3123 22 1 3.4624 -7.2912 0.9375 23 6 1.5888 -7.4830 1.8481 24 1 1.1409 -7.3258 2.8428 25 6 0.6509 -7.5667 0.5945 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5609 0.8844 28 1 0.6244 -2.5529 -0.8956 29 1 2.8718 -3.6005 -0.9002 30 1 2.8717 -3.6084 0.8798 31 1 0.8739 -4.9880 0.7641 32 1 2.3194 -9.5589 -0.3954 33 1 3.7058 -8.4617 -0.3154 34 1 4.2037 -8.5399 3.1055 35 1 4.7684 -8.1202 1.4754 36 1 4.4245 -5.9977 2.3129 37 1 -0.0693 -6.7524 0.5574 38 1 0.1405 -8.5334 0.5384 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925635545.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:08 Heat of formation + Delta-G solvation = 165.027483 kcal Electronic energy + Delta-G solvation = -17215.307065 eV Core-core repulsion = 14677.697987 eV Total energy + Delta-G solvation = -2537.609078 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.07977 -35.91275 -34.35091 -32.72354 -30.22545 -28.43219 -27.77132 -26.06591 -24.54367 -23.41885 -20.51795 -20.13867 -19.89212 -18.61783 -16.42029 -16.22513 -15.78762 -15.05617 -14.78370 -14.44505 -14.17405 -13.53061 -12.95182 -12.56497 -12.27307 -12.08553 -11.73770 -11.39770 -11.18941 -11.13346 -10.90589 -10.88672 -10.65866 -10.57057 -10.45346 -10.41830 -9.97284 -9.49197 -9.25345 -9.08333 -8.44566 -8.29694 -7.57310 -5.95566 -3.97748 3.34844 3.40687 3.41506 3.44209 4.03731 4.29045 4.46699 4.48105 4.59403 4.75066 4.92640 5.01787 5.11964 5.15363 5.27456 5.40420 5.42948 5.55195 5.60279 5.63121 5.75718 5.84407 5.96351 6.09533 6.14503 6.17698 6.31916 6.38624 6.48570 6.57074 7.04004 7.30106 7.54164 7.80027 7.88275 8.03991 8.14913 8.48812 9.09424 9.65628 11.15950 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.045329 B = 0.005092 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.556236 B = 5497.455980 C = 5762.562467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.026 3.974 10 C 0.071 3.929 11 N -0.682 5.682 12 C 0.149 3.851 13 H 0.076 0.924 14 C -0.090 4.090 15 H 0.116 0.884 16 C -0.119 4.119 17 C -0.105 4.105 18 H 0.094 0.906 19 C 0.006 3.994 20 N -0.569 5.569 21 C -0.103 4.103 22 H 0.054 0.946 23 C -0.084 4.084 24 H 0.120 0.880 25 C -0.124 4.124 26 H 0.260 0.740 27 H 0.014 0.986 28 H 0.025 0.975 29 H 0.054 0.946 30 H 0.015 0.985 31 H 0.343 0.657 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.319 0.681 37 H 0.081 0.919 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.306 -18.636 1.537 19.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.057 4.057 11 N -0.313 5.313 12 C 0.037 3.963 13 H 0.094 0.906 14 C -0.109 4.109 15 H 0.134 0.866 16 C -0.157 4.157 17 C -0.124 4.124 18 H 0.112 0.888 19 C -0.123 4.123 20 N -0.193 5.193 21 C -0.215 4.215 22 H 0.071 0.929 23 C -0.102 4.102 24 H 0.138 0.862 25 C -0.161 4.161 26 H 0.070 0.930 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.033 0.967 31 H 0.162 0.838 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.132 0.868 37 H 0.099 0.901 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.627 -18.534 1.578 19.168 hybrid contribution 1.716 0.849 0.125 1.918 sum 6.343 -17.686 1.704 18.866 Atomic orbital electron populations 1.69977 1.06015 1.26517 1.50759 1.24994 0.94827 0.99152 0.95358 0.86599 0.79814 0.83540 0.78056 1.20676 1.21223 1.19965 1.21176 0.92925 0.91063 1.50725 0.92872 1.19055 0.94038 0.90373 0.97679 1.22115 0.96975 0.88370 0.98268 1.60330 1.19482 1.01336 1.50134 1.21712 0.94624 0.91340 0.88651 0.90558 1.25050 0.96049 0.91413 0.98431 0.86579 1.23427 0.99454 0.98572 0.94225 1.25473 0.94514 0.98229 0.94148 0.88828 1.24929 0.96174 0.91637 0.99572 1.67797 1.14836 1.02406 1.34229 1.23862 0.96956 1.07059 0.93657 0.92859 1.25400 0.92344 0.94590 0.97914 0.86195 1.23554 0.97002 1.01591 0.93993 0.93031 0.96769 0.95702 0.92758 0.96711 0.83776 0.91989 0.92502 0.91187 0.92612 0.86781 0.90078 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.32 13.29 55.43 0.74 -26.59 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.69 5.23 -27.88 -0.15 0.55 16 10 C 0.07 1.53 5.50 -3.83 -0.02 1.51 16 11 N -0.68 -12.37 6.15 -105.61 -0.65 -13.02 16 12 C 0.15 2.19 3.11 -67.21 -0.21 1.98 16 13 H 0.08 1.14 7.93 -51.14 -0.41 0.74 16 14 C -0.09 -1.06 5.57 -81.42 -0.45 -1.52 16 15 H 0.12 1.30 8.22 -51.40 -0.42 0.88 16 16 C -0.12 -1.19 5.23 -21.89 -0.11 -1.31 16 17 C -0.11 -1.09 4.98 -82.03 -0.41 -1.49 16 18 H 0.09 0.83 8.25 -51.16 -0.42 0.41 16 19 C 0.01 0.07 6.57 1.39 0.01 0.08 16 20 N -0.57 -7.67 8.31 -154.21 -1.28 -8.95 16 21 C -0.10 -1.43 4.79 -70.64 -0.34 -1.77 16 22 H 0.05 0.65 1.31 -146.59 -0.19 0.46 16 23 C -0.08 -1.04 5.74 -81.16 -0.47 -1.51 16 24 H 0.12 1.56 8.24 -51.24 -0.42 1.13 16 25 C -0.12 -1.47 5.98 -22.08 -0.13 -1.61 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 1.17 8.06 -51.93 -0.42 0.75 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.34 6.31 7.11 -39.29 -0.28 6.03 16 32 H 0.06 0.54 8.18 -51.68 -0.42 0.12 16 33 H 0.06 0.56 7.01 -52.10 -0.37 0.19 16 34 H 0.07 0.70 8.20 -51.54 -0.42 0.28 16 35 H 0.06 0.55 7.25 -52.21 -0.38 0.17 16 36 H 0.32 4.13 8.85 -39.29 -0.35 3.78 16 37 H 0.08 1.08 6.88 -52.06 -0.36 0.72 16 38 H 0.06 0.66 8.17 -51.67 -0.42 0.24 16 LS Contribution 290.02 15.07 4.37 4.37 Total: -1.00 -30.38 290.02 -10.62 -41.00 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.09 Total: 5.07 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -2.69 Total: -18.85 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: -1.19 Total: -48.56 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.38 -10.62 -41.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925635545.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.030 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds