Wall clock time and date at job start Sun Mar 29 2020 21:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.47280 * 111.00148 * 180.02562 * 11 10 9 13 13 H 1.10379 * 109.95930 * 325.69881 * 12 11 10 14 14 C 1.59920 * 113.47987 * 199.46251 * 12 11 10 15 15 H 1.09928 * 117.65415 * 66.54155 * 14 12 11 16 16 C 1.57921 * 106.38552 * 199.80817 * 14 12 11 17 17 C 1.56961 * 110.02807 * 67.01172 * 16 14 12 18 18 H 1.10337 * 115.37452 * 125.66403 * 17 16 14 19 19 C 1.57986 * 108.41407 * 256.77096 * 17 16 14 20 20 N 1.53079 * 106.39308 * 94.90412 * 19 17 16 21 21 C 1.43183 * 88.82164 * 324.30888 * 20 19 17 22 22 H 1.08009 * 83.82857 * 330.09443 * 21 20 19 23 23 C 1.59604 * 99.35048 * 0.69828 * 17 16 14 24 24 H 1.10215 * 121.17759 * 168.89510 * 23 17 16 25 25 C 1.56785 * 102.19412 * 33.49007 * 23 17 16 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 30 30 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 31 31 H 1.00900 * 110.99562 * 303.94873 * 11 10 9 32 32 H 1.09437 * 108.77462 * 186.28523 * 16 14 12 33 33 H 1.08687 * 110.03346 * 304.97974 * 16 14 12 34 34 H 1.09693 * 109.66602 * 212.14112 * 19 17 16 35 35 H 1.08502 * 112.13005 * 333.27925 * 19 17 16 36 36 H 1.00895 * 110.23392 * 213.60239 * 20 19 17 37 37 H 1.08771 * 112.54467 * 185.40092 * 25 23 17 38 38 H 1.09459 * 111.53932 * 60.51497 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 2.4373 -6.0789 -0.0212 13 1 3.3410 -5.8298 -0.6040 14 6 1.7639 -7.4421 -0.5167 15 1 1.4441 -7.5011 -1.5668 16 6 2.6816 -8.6117 0.0160 17 6 2.6137 -8.6773 1.5827 18 1 2.3368 -9.6591 2.0033 19 6 3.9360 -8.0397 2.1667 20 7 3.6119 -6.5747 2.4700 21 6 2.7696 -6.5521 1.3123 22 1 3.4624 -7.2912 0.9375 23 6 1.5888 -7.4830 1.8481 24 1 1.1409 -7.3258 2.8428 25 6 0.6509 -7.5667 0.5945 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5609 0.8844 28 1 0.6244 -2.5529 -0.8956 29 1 2.8718 -3.6005 -0.9002 30 1 2.8717 -3.6084 0.8798 31 1 0.8739 -4.9880 0.7641 32 1 2.3194 -9.5589 -0.3954 33 1 3.7058 -8.4617 -0.3154 34 1 4.2037 -8.5399 3.1055 35 1 4.7684 -8.1202 1.4754 36 1 4.4245 -5.9977 2.3129 37 1 -0.0693 -6.7524 0.5574 38 1 0.1405 -8.5334 0.5384 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925635545.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:07 Heat of formation + Delta-G solvation = 142.105248 kcal Electronic energy + Delta-G solvation = -17216.301048 eV Core-core repulsion = 14677.697987 eV Total energy + Delta-G solvation = -2538.603061 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.03089 -37.35005 -35.69309 -34.63424 -31.81252 -29.60197 -28.97425 -27.23767 -25.98141 -24.84244 -22.44058 -21.07810 -20.91769 -19.55955 -18.50515 -17.47763 -16.82150 -16.51368 -16.12903 -15.80652 -15.48453 -15.05851 -14.43014 -14.13115 -13.58361 -13.41909 -13.06585 -12.86484 -12.66728 -12.51381 -12.32467 -12.16969 -12.08028 -11.79047 -11.54599 -11.46330 -11.35203 -11.32722 -11.21106 -10.57860 -10.37985 -9.51924 -8.92646 -8.20358 -6.32114 1.39595 1.41688 1.52612 2.39623 2.44433 3.00865 3.12837 3.38591 3.46692 3.62435 3.87698 3.97582 4.04188 4.20607 4.25521 4.28374 4.43813 4.53367 4.55775 4.64541 4.72183 4.75152 4.92290 4.98592 5.05684 5.12379 5.16454 5.24282 5.29012 5.35871 5.43704 5.55458 5.68028 5.78409 6.14611 6.29067 6.29733 6.56722 6.84769 7.37006 8.91958 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.045329 B = 0.005092 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.556236 B = 5497.455980 C = 5762.562467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.034 3.966 10 C 0.092 3.908 11 N -0.685 5.685 12 C 0.139 3.861 13 H 0.071 0.929 14 C -0.084 4.084 15 H 0.125 0.875 16 C -0.114 4.114 17 C -0.093 4.093 18 H 0.118 0.882 19 C 0.004 3.996 20 N -0.593 5.593 21 C -0.132 4.132 22 H 0.079 0.921 23 C -0.093 4.093 24 H 0.108 0.892 25 C -0.121 4.121 26 H 0.264 0.736 27 H -0.013 1.013 28 H -0.004 1.004 29 H 0.056 0.944 30 H 0.008 0.992 31 H 0.339 0.661 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.318 0.682 37 H 0.058 0.942 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.719 -20.089 1.310 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.004 4.004 10 C -0.037 4.037 11 N -0.315 5.315 12 C 0.027 3.973 13 H 0.089 0.911 14 C -0.103 4.103 15 H 0.142 0.858 16 C -0.151 4.151 17 C -0.111 4.111 18 H 0.135 0.865 19 C -0.124 4.124 20 N -0.217 5.217 21 C -0.243 4.243 22 H 0.096 0.904 23 C -0.112 4.112 24 H 0.126 0.874 25 C -0.159 4.159 26 H 0.073 0.927 27 H 0.005 0.995 28 H 0.015 0.985 29 H 0.074 0.926 30 H 0.026 0.974 31 H 0.158 0.842 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.130 0.870 37 H 0.077 0.923 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.050 -20.019 1.348 20.956 hybrid contribution 1.248 1.276 0.223 1.798 sum 7.298 -18.743 1.571 20.175 Atomic orbital electron populations 1.70114 1.07843 1.27821 1.51364 1.25982 0.95778 1.03377 0.94541 0.85407 0.78552 0.78234 0.78589 1.19547 1.20592 1.18876 1.21597 0.93423 0.92309 1.51046 0.92359 1.18896 0.94271 0.92305 0.94892 1.21684 0.95476 0.88581 0.97929 1.60274 1.20012 1.01176 1.50056 1.21951 0.93981 0.91341 0.90005 0.91055 1.25077 0.96228 0.90207 0.98824 0.85758 1.23382 0.99390 0.98505 0.93873 1.25495 0.92963 0.98216 0.94417 0.86458 1.25000 0.96917 0.89866 1.00661 1.67807 1.15046 1.04313 1.34516 1.23903 0.98441 1.08049 0.93940 0.90391 1.25369 0.92577 0.95712 0.97495 0.87373 1.23524 0.96676 1.01829 0.93886 0.92701 0.99470 0.98546 0.92570 0.97382 0.84225 0.89546 0.91833 0.90175 0.91167 0.86972 0.92320 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.20 13.29 21.45 0.28 -57.91 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.97 45.25 29.54 68.60 2.03 47.27 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.55 -32.23 9.11 25.60 0.23 -31.99 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.89 5.23 29.85 0.16 2.04 16 10 C 0.09 4.11 5.50 86.30 0.47 4.58 16 11 N -0.68 -25.53 6.15 -488.04 -3.00 -28.53 16 12 C 0.14 4.01 3.11 45.04 0.14 4.15 16 13 H 0.07 2.10 7.93 -1.65 -0.01 2.09 16 14 C -0.08 -1.83 5.57 -4.83 -0.03 -1.85 16 15 H 0.12 2.51 8.22 -1.89 -0.02 2.50 16 16 C -0.11 -1.86 5.23 33.73 0.18 -1.69 16 17 C -0.09 -1.61 4.98 -5.23 -0.03 -1.63 16 18 H 0.12 1.56 8.25 -1.67 -0.01 1.55 16 19 C 0.00 0.08 6.57 86.14 0.57 0.65 16 20 N -0.59 -15.52 8.31 -641.80 -5.33 -20.85 16 21 C -0.13 -3.53 4.79 44.98 0.22 -3.32 16 22 H 0.08 1.74 1.31 -110.91 -0.15 1.60 16 23 C -0.09 -2.20 5.74 -4.66 -0.03 -2.23 16 24 H 0.11 2.79 8.24 -1.74 -0.01 2.78 16 25 C -0.12 -2.74 5.98 33.61 0.20 -2.54 16 26 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 27 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 28 H 0.00 -0.24 8.14 -2.39 -0.02 -0.25 16 29 H 0.06 2.46 8.06 -2.38 -0.02 2.44 16 30 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.34 13.06 7.11 -89.69 -0.64 12.42 16 32 H 0.09 1.08 8.18 -2.15 -0.02 1.06 16 33 H 0.06 1.00 7.01 -2.55 -0.02 0.98 16 34 H 0.08 1.37 8.20 -2.02 -0.02 1.36 16 35 H 0.07 1.14 7.25 -2.65 -0.02 1.12 16 36 H 0.32 8.10 8.85 -89.70 -0.79 7.31 16 37 H 0.06 1.58 6.88 -2.51 -0.02 1.56 16 38 H 0.08 1.54 8.17 -2.14 -0.02 1.52 16 Total: -1.00 -66.44 290.02 -3.96 -70.41 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: -0.49 Total: 22.90 kcal Atomic # 6 Polarization: -35.83 SS G_CDS: 2.55 Total: -33.29 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -8.05 Total: -107.29 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -66.44 -3.96 -70.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925635545.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.512 kcal (2) G-P(sol) polarization free energy of solvation -66.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds