Wall clock time and date at job start Sun Mar 29 2020 21:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47411 * 179.97438 * 10 9 7 12 12 C 1.46875 * 110.99811 * 179.97438 * 11 10 9 13 13 H 1.08865 * 109.52063 * 325.40411 * 12 11 10 14 14 C 1.57141 * 109.78075 * 86.45513 * 12 11 10 15 15 H 1.09952 * 114.03374 * 350.58125 * 14 12 11 16 16 N 1.50642 * 109.88507 * 221.62430 * 14 12 11 17 17 C 1.53503 * 107.55193 * 260.88951 * 16 14 12 18 18 C 1.49202 * 87.70959 * 35.77804 * 17 16 14 19 19 H 1.08565 * 81.91919 * 28.99727 * 18 17 16 20 20 C 1.46040 * 149.93152 * 105.64073 * 18 17 16 21 21 C 1.55319 * 109.90510 * 204.31520 * 12 11 10 22 22 H 1.09787 * 114.41832 * 42.73331 * 21 12 11 23 23 C 1.55704 * 99.28787 * 279.74462 * 21 12 11 24 24 C 1.55817 * 94.86397 * 305.77838 * 23 21 12 25 25 H 1.10128 * 118.33173 * 191.23560 * 24 23 21 26 26 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 28 28 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 29 29 H 1.09003 * 109.46788 * 300.00488 * 10 9 7 30 30 H 1.08999 * 109.46950 * 59.99414 * 10 9 7 31 31 H 1.00895 * 110.99573 * 303.94943 * 11 10 9 32 32 H 1.00915 * 110.99271 * 140.17522 * 16 14 12 33 33 H 1.08184 * 112.97338 * 149.44952 * 17 16 14 34 34 H 1.08166 * 113.03093 * 282.04553 * 17 16 14 35 35 H 1.09737 * 113.00634 * 337.98551 * 20 18 17 36 36 H 1.09749 * 112.97403 * 104.18329 * 20 18 17 37 37 H 1.08970 * 112.53532 * 62.80549 * 23 21 12 38 38 H 1.09210 * 112.04876 * 189.22724 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 7 1.5104 -4.9343 0.0001 12 6 2.4348 -6.0758 -0.0005 13 1 3.3197 -5.8270 -0.5838 14 6 2.8416 -6.4314 1.4751 15 1 2.5146 -5.6920 2.2203 16 7 4.3136 -6.7447 1.5394 17 6 4.4626 -8.2725 1.5299 18 6 3.2944 -8.3207 0.6030 19 1 3.6743 -7.3442 0.3190 20 6 2.7536 -8.5124 -0.7399 21 6 1.7328 -7.3243 -0.6012 22 1 1.1327 -7.1202 -1.4977 23 6 0.9190 -7.7794 0.6457 24 6 2.1540 -7.8420 1.5938 25 1 2.0329 -8.3192 2.5789 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5570 0.8898 28 1 0.6239 -2.5567 -0.8903 29 1 2.8717 -3.6044 -0.8905 30 1 2.8717 -3.6044 0.8894 31 1 0.8744 -4.9841 0.7817 32 1 4.7295 -6.3579 2.3736 33 1 5.3797 -8.6044 1.0616 34 1 4.2524 -8.7242 2.4900 35 1 3.4983 -8.3502 -1.5294 36 1 2.2651 -9.4865 -0.8700 37 1 0.1855 -7.0371 0.9594 38 1 0.4571 -8.7580 0.4990 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925635547.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:09 Heat of formation + Delta-G solvation = 136.817243 kcal Electronic energy + Delta-G solvation = -17242.676766 eV Core-core repulsion = 14703.844400 eV Total energy + Delta-G solvation = -2538.832366 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.14632 -37.31576 -35.63984 -34.73673 -31.78050 -30.24902 -28.48646 -27.18884 -26.55316 -24.86308 -22.49637 -20.95662 -20.87295 -19.97455 -18.50293 -17.25630 -17.07883 -16.50002 -16.07293 -15.74968 -15.48756 -14.91259 -14.48754 -14.27582 -13.72747 -13.53444 -13.26262 -12.94415 -12.83982 -12.60001 -12.52993 -12.35268 -12.10778 -11.97490 -11.80071 -11.49003 -11.39759 -11.16835 -10.75348 -10.58719 -10.20234 -9.32148 -9.19304 -8.22398 -6.34320 1.38581 1.42037 1.50158 2.38748 2.75037 2.90064 3.10758 3.26327 3.38721 3.52608 3.73478 4.00541 4.16633 4.26465 4.28010 4.41557 4.53721 4.56248 4.58398 4.70650 4.75156 4.80218 4.98750 5.01173 5.04177 5.13684 5.17698 5.20506 5.37002 5.41867 5.43818 5.64013 5.66908 5.75957 6.10610 6.22970 6.43252 6.52657 6.81963 7.34941 8.89570 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.044761 B = 0.005100 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.398782 B = 5488.615209 C = 5788.854351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.967 3.033 4 H -0.280 1.280 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.034 3.966 10 C 0.091 3.909 11 N -0.683 5.683 12 C 0.096 3.904 13 H 0.060 0.940 14 C 0.029 3.971 15 H 0.070 0.930 16 N -0.685 5.685 17 C 0.101 3.899 18 C -0.291 4.291 19 H 0.133 0.867 20 C -0.032 4.032 21 C -0.096 4.096 22 H 0.095 0.905 23 C -0.114 4.114 24 C -0.121 4.121 25 H 0.121 0.879 26 H 0.265 0.735 27 H -0.009 1.009 28 H -0.005 1.005 29 H 0.051 0.949 30 H 0.013 0.987 31 H 0.338 0.662 32 H 0.310 0.690 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.446 -19.173 3.215 20.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.791 3.209 4 H -0.205 1.205 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.075 0.925 9 C -0.003 4.003 10 C -0.038 4.038 11 N -0.313 5.313 12 C -0.015 4.015 13 H 0.078 0.922 14 C -0.081 4.081 15 H 0.088 0.912 16 N -0.317 5.317 17 C -0.025 4.025 18 C -0.310 4.310 19 H 0.149 0.851 20 C -0.070 4.070 21 C -0.115 4.115 22 H 0.113 0.887 23 C -0.151 4.151 24 C -0.140 4.140 25 H 0.138 0.862 26 H 0.074 0.926 27 H 0.010 0.990 28 H 0.013 0.987 29 H 0.069 0.931 30 H 0.031 0.969 31 H 0.156 0.844 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.390 -18.793 1.820 19.933 hybrid contribution 0.218 1.327 1.843 2.281 sum 6.608 -17.467 3.663 19.031 Atomic orbital electron populations 1.70100 1.07797 1.27938 1.51185 1.25966 0.95782 1.03328 0.94463 0.85471 0.78275 0.77946 0.79174 1.20529 1.19175 1.19213 1.21559 0.93408 0.92341 1.51328 0.92461 1.18902 0.94201 0.92197 0.95043 1.21719 0.95423 0.88500 0.98151 1.60496 1.19689 1.01458 1.49669 1.23219 0.93748 0.90817 0.93758 0.92167 1.25501 0.88143 0.97602 0.96873 0.91236 1.66878 1.11840 1.11095 1.41879 1.22420 0.97134 0.85352 0.97589 1.22994 0.95334 1.16753 0.95876 0.85102 1.20794 0.96867 0.97249 0.92076 1.23687 0.97137 0.92478 0.98203 0.88684 1.22978 0.95739 1.01678 0.94738 1.25220 0.94888 0.95071 0.98819 0.86158 0.92649 0.99038 0.98660 0.93094 0.96878 0.84365 0.87261 0.87744 0.90048 0.90855 0.89762 0.91841 0.89148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.63 13.29 21.45 0.28 -57.35 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 5 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.55 -32.25 9.11 25.60 0.23 -32.01 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.03 1.88 5.23 29.85 0.16 2.03 16 10 C 0.09 4.06 5.44 86.30 0.47 4.53 16 11 N -0.68 -25.34 6.19 -480.91 -2.98 -28.32 16 12 C 0.10 2.91 2.02 47.17 0.10 3.00 16 13 H 0.06 2.08 7.33 -2.46 -0.02 2.06 16 14 C 0.03 0.78 4.54 47.18 0.21 0.99 16 15 H 0.07 2.06 8.08 -1.88 -0.02 2.04 16 16 N -0.68 -16.42 6.59 -548.77 -3.62 -20.04 16 17 C 0.10 1.82 8.33 83.76 0.70 2.52 16 18 C -0.29 -6.06 5.10 -12.18 -0.06 -6.12 16 19 H 0.13 3.32 1.59 -155.28 -0.25 3.07 16 20 C -0.03 -0.64 6.77 29.95 0.20 -0.44 16 21 C -0.10 -2.38 4.52 -7.57 -0.03 -2.42 16 22 H 0.09 2.49 8.21 -1.97 -0.02 2.48 16 23 C -0.11 -2.51 6.52 32.50 0.21 -2.30 16 24 C -0.12 -2.60 5.32 -6.32 -0.03 -2.63 16 25 H 0.12 2.22 8.12 -1.78 -0.01 2.20 16 26 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 27 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 28 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 29 H 0.05 2.32 8.06 -2.39 -0.02 2.30 16 30 H 0.01 0.58 8.11 -2.39 -0.02 0.56 16 31 H 0.34 12.22 7.61 -89.70 -0.68 11.54 16 32 H 0.31 6.90 8.95 -89.68 -0.80 6.10 16 33 H 0.10 1.64 8.07 -2.81 -0.02 1.62 16 34 H 0.08 1.21 7.71 -2.82 -0.02 1.19 16 35 H 0.07 1.44 8.20 -1.99 -0.02 1.43 16 36 H 0.08 1.39 8.20 -1.99 -0.02 1.38 16 37 H 0.06 1.55 7.34 -2.40 -0.02 1.53 16 38 H 0.09 1.67 8.14 -2.28 -0.02 1.65 16 Total: -1.00 -64.83 291.36 -2.33 -67.16 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -0.66 Total: 23.71 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 2.61 Total: -32.21 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -6.31 Total: -105.70 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -64.83 -2.33 -67.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925635547.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.981 kcal (2) G-P(sol) polarization free energy of solvation -64.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds