Wall clock time and date at job start Sun Mar 29 2020 21:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.21135 * 2 1 4 4 C 1.54415 * 110.33230 * 238.04014 * 2 1 3 5 5 C 1.54574 * 101.66971 * 215.46761 * 4 2 1 6 6 H 1.09001 * 110.59356 * 266.20221 * 5 4 2 7 7 N 1.46904 * 110.48043 * 143.63285 * 5 4 2 8 8 C 1.46899 * 111.00029 * 158.74647 * 7 5 4 9 9 C 1.52997 * 109.47254 * 179.97438 * 8 7 5 10 10 C 1.50697 * 109.47466 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99890 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99563 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00432 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46756 * 59.99920 * 14 12 10 16 16 H 1.48490 * 109.47381 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47117 * 300.00527 * 14 12 10 18 18 C 1.51472 * 104.22174 * 24.94538 * 5 4 2 19 19 N 1.31166 * 141.94113 * 163.57286 * 18 5 4 20 20 C 1.33160 * 109.83992 * 180.15411 * 19 18 5 21 21 N 1.30656 * 108.94392 * 359.91979 * 20 19 18 22 22 N 1.34118 * 110.04911 * 343.55026 * 18 5 4 23 23 H 1.08997 * 109.47521 * 299.53945 * 1 2 3 24 24 H 1.09007 * 109.46491 * 59.53613 * 1 2 3 25 25 H 1.08993 * 109.47639 * 179.53235 * 1 2 3 26 26 H 1.08998 * 110.99659 * 97.36243 * 4 2 1 27 27 H 1.09000 * 110.97886 * 333.55595 * 4 2 1 28 28 H 1.00908 * 110.99583 * 282.69559 * 7 5 4 29 29 H 1.09002 * 109.47043 * 299.99792 * 8 7 5 30 30 H 1.09001 * 109.47354 * 59.99854 * 8 7 5 31 31 H 1.09002 * 109.47153 * 300.00004 * 9 8 7 32 32 H 1.08998 * 109.47533 * 59.99633 * 9 8 7 33 33 H 0.97002 * 119.99731 * 180.02562 * 13 12 10 34 34 H 1.07996 * 125.52687 * 179.91285 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9066 1.0229 0.0000 4 6 2.0666 -0.7664 -1.2285 5 6 3.3313 -1.4401 -0.6488 6 1 4.2115 -0.8232 -0.8299 7 7 3.5138 -2.7769 -1.2299 8 6 4.9087 -3.2197 -1.1040 9 6 5.0590 -4.6129 -1.7184 10 6 6.4902 -5.0669 -1.5899 11 1 7.2196 -4.4261 -1.1169 12 6 6.8683 -6.3008 -2.0751 13 7 5.9799 -7.0814 -2.6506 14 14 8.6425 -6.8633 -1.9164 15 1 9.0201 -6.9113 -0.4810 16 1 8.7881 -8.2160 -2.5115 17 1 9.5297 -5.9100 -2.6300 18 6 3.0515 -1.5413 0.8364 19 7 3.4567 -2.1515 1.9245 20 6 2.7245 -1.7559 2.9639 21 7 1.8413 -0.8849 2.5536 22 7 2.0381 -0.7285 1.1698 23 1 -0.3634 0.5066 0.8940 24 1 -0.3632 0.5211 -0.8859 25 1 -0.3634 -1.0275 -0.0084 26 1 2.3245 -0.0801 -2.0349 27 1 1.3477 -1.5123 -1.5677 28 1 2.8835 -3.4432 -0.8090 29 1 5.5607 -2.5196 -1.6265 30 1 5.1848 -3.2561 -0.0502 31 1 4.4071 -5.3127 -1.1956 32 1 4.7829 -4.5771 -2.7722 33 1 6.2458 -7.9497 -2.9917 34 1 2.8416 -2.0993 3.9811 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926133940.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:11 Heat of formation + Delta-G solvation = 97.378920 kcal Electronic energy + Delta-G solvation = -16405.087035 eV Core-core repulsion = 13761.004152 eV Total energy + Delta-G solvation = -2644.082883 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.42855 -37.83554 -35.44171 -33.00515 -31.34011 -30.63413 -29.70727 -27.80384 -24.73166 -23.49519 -22.57674 -20.89501 -20.40752 -20.20755 -17.19271 -16.30145 -15.65213 -15.45001 -14.91909 -14.53250 -14.31719 -14.29281 -13.45335 -13.11782 -12.98974 -12.51065 -12.34758 -12.13876 -11.72952 -11.50016 -11.22367 -11.07442 -10.88472 -10.51744 -10.05316 -9.82821 -9.68634 -9.53011 -9.36289 -9.12745 -8.33022 -8.07950 -5.95747 -3.97765 1.64133 2.08501 3.02641 3.37582 3.41460 3.44329 3.58410 4.15275 4.20882 4.49919 4.53006 4.78613 4.85936 4.95589 5.09582 5.28403 5.34018 5.40613 5.45025 5.61528 5.72959 5.81989 6.27628 6.42883 6.49810 6.52193 6.65661 6.99661 7.28343 7.63561 7.76388 7.90637 8.08624 8.22827 8.46679 9.08797 9.65728 11.15807 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.040244 B = 0.005056 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.586634 B = 5536.346309 C = 5957.329474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.149 3.851 3 H 0.099 0.901 4 C -0.115 4.115 5 C 0.159 3.841 6 H 0.114 0.886 7 N -0.665 5.665 8 C 0.060 3.940 9 C 0.027 3.973 10 C -0.519 4.519 11 H 0.054 0.946 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C 0.229 3.771 19 N -0.524 5.524 20 C 0.197 3.803 21 N -0.308 5.308 22 N -0.395 5.395 23 H 0.066 0.934 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.110 0.890 27 H 0.100 0.900 28 H 0.345 0.655 29 H 0.060 0.940 30 H 0.035 0.965 31 H 0.014 0.986 32 H 0.024 0.976 33 H 0.261 0.739 34 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.167 14.858 4.171 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.047 3.953 3 H 0.117 0.883 4 C -0.155 4.155 5 C 0.044 3.956 6 H 0.132 0.868 7 N -0.294 5.294 8 C -0.068 4.068 9 C -0.010 4.010 10 C -0.558 4.558 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.721 3.279 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.051 4.051 19 N -0.251 5.251 20 C -0.105 4.105 21 N -0.136 5.136 22 N -0.186 5.186 23 H 0.085 0.915 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.129 0.871 27 H 0.119 0.881 28 H 0.164 0.836 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -10.504 15.134 3.982 18.847 hybrid contribution 1.007 -0.582 1.131 1.622 sum -9.497 14.552 5.113 18.114 Atomic orbital electron populations 1.22050 0.92543 1.03544 1.03290 1.22187 0.96508 0.96089 0.80513 0.88274 1.23058 0.96785 0.99984 0.95655 1.21182 0.99050 0.95620 0.79746 0.86838 1.60872 1.09579 1.01301 1.57657 1.22321 0.85003 1.00004 0.99466 1.19045 0.96678 0.88805 0.96511 1.21117 0.94699 1.01785 1.38199 0.92730 1.24985 0.97353 0.96694 0.95265 1.69965 1.33703 1.10274 1.39461 0.86646 0.85209 0.77711 0.78365 1.20250 1.21327 1.20244 1.26728 0.89119 0.90367 0.98896 1.70207 1.29868 1.28280 0.96789 1.26139 0.90665 0.93870 0.99863 1.77920 1.25067 1.23414 0.87197 1.51727 1.27779 1.33383 1.05757 0.91494 0.90089 0.91541 0.87141 0.88147 0.83643 0.92150 0.94697 0.96760 0.95740 0.92988 0.76431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.49 37.16 0.35 -0.90 16 2 C 0.15 1.42 4.13 -66.98 -0.28 1.14 16 3 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 4 C -0.12 -1.06 6.39 -25.16 -0.16 -1.22 16 5 C 0.16 2.13 3.24 -67.66 -0.22 1.91 16 6 H 0.11 1.44 7.87 -51.93 -0.41 1.03 16 7 N -0.66 -11.18 6.30 -106.66 -0.67 -11.85 16 8 C 0.06 1.24 5.46 -3.83 -0.02 1.22 16 9 C 0.03 0.70 5.23 -27.89 -0.15 0.56 16 10 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 11 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 14 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.23 3.57 7.93 -155.31 -1.23 2.34 16 19 N -0.52 -9.19 11.20 -11.75 -0.13 -9.32 16 20 C 0.20 2.94 13.03 -91.93 -1.20 1.74 16 21 N -0.31 -4.69 12.80 29.26 0.37 -4.32 16 22 N -0.40 -5.49 4.53 -50.64 -0.23 -5.72 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.10 0.94 7.86 -51.93 -0.41 0.53 16 28 H 0.34 6.04 8.49 -39.29 -0.33 5.71 16 29 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 30 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 31 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.22 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 289.93 15.07 4.37 4.37 Total: -1.00 -33.61 289.93 -8.80 -42.41 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -4.91 Total: 0.70 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -3.31 Total: -6.76 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: 0.08 Total: -57.57 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.61 -8.80 -42.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926133940.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.784 kcal (2) G-P(sol) polarization free energy of solvation -33.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds