Wall clock time and date at job start Sun Mar 29 2020 21:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.21135 * 2 1 4 4 C 1.54415 * 110.33230 * 238.04014 * 2 1 3 5 5 C 1.54574 * 101.66971 * 215.46761 * 4 2 1 6 6 H 1.09001 * 110.59356 * 266.20221 * 5 4 2 7 7 N 1.46904 * 110.48043 * 143.63285 * 5 4 2 8 8 C 1.46899 * 111.00029 * 158.74647 * 7 5 4 9 9 C 1.52997 * 109.47254 * 179.97438 * 8 7 5 10 10 C 1.50697 * 109.47466 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99890 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99563 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00432 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46756 * 59.99920 * 14 12 10 16 16 H 1.48490 * 109.47381 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47117 * 300.00527 * 14 12 10 18 18 C 1.51472 * 104.22174 * 24.94538 * 5 4 2 19 19 N 1.31166 * 141.94113 * 163.57286 * 18 5 4 20 20 C 1.33160 * 109.83992 * 180.15411 * 19 18 5 21 21 N 1.30656 * 108.94392 * 359.91979 * 20 19 18 22 22 N 1.34118 * 110.04911 * 343.55026 * 18 5 4 23 23 H 1.08997 * 109.47521 * 299.53945 * 1 2 3 24 24 H 1.09007 * 109.46491 * 59.53613 * 1 2 3 25 25 H 1.08993 * 109.47639 * 179.53235 * 1 2 3 26 26 H 1.08998 * 110.99659 * 97.36243 * 4 2 1 27 27 H 1.09000 * 110.97886 * 333.55595 * 4 2 1 28 28 H 1.00908 * 110.99583 * 282.69559 * 7 5 4 29 29 H 1.09002 * 109.47043 * 299.99792 * 8 7 5 30 30 H 1.09001 * 109.47354 * 59.99854 * 8 7 5 31 31 H 1.09002 * 109.47153 * 300.00004 * 9 8 7 32 32 H 1.08998 * 109.47533 * 59.99633 * 9 8 7 33 33 H 0.97002 * 119.99731 * 180.02562 * 13 12 10 34 34 H 1.07996 * 125.52687 * 179.91285 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9066 1.0229 0.0000 4 6 2.0666 -0.7664 -1.2285 5 6 3.3313 -1.4401 -0.6488 6 1 4.2115 -0.8232 -0.8299 7 7 3.5138 -2.7769 -1.2299 8 6 4.9087 -3.2197 -1.1040 9 6 5.0590 -4.6129 -1.7184 10 6 6.4902 -5.0669 -1.5899 11 1 7.2196 -4.4261 -1.1169 12 6 6.8683 -6.3008 -2.0751 13 7 5.9799 -7.0814 -2.6506 14 14 8.6425 -6.8633 -1.9164 15 1 9.0201 -6.9113 -0.4810 16 1 8.7881 -8.2160 -2.5115 17 1 9.5297 -5.9100 -2.6300 18 6 3.0515 -1.5413 0.8364 19 7 3.4567 -2.1515 1.9245 20 6 2.7245 -1.7559 2.9639 21 7 1.8413 -0.8849 2.5536 22 7 2.0381 -0.7285 1.1698 23 1 -0.3634 0.5066 0.8940 24 1 -0.3632 0.5211 -0.8859 25 1 -0.3634 -1.0275 -0.0084 26 1 2.3245 -0.0801 -2.0349 27 1 1.3477 -1.5123 -1.5677 28 1 2.8835 -3.4432 -0.8090 29 1 5.5607 -2.5196 -1.6265 30 1 5.1848 -3.2561 -0.0502 31 1 4.4071 -5.3127 -1.1956 32 1 4.7829 -4.5771 -2.7722 33 1 6.2458 -7.9497 -2.9917 34 1 2.8416 -2.0993 3.9811 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926133940.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:11 Heat of formation + Delta-G solvation = 74.411841 kcal Electronic energy + Delta-G solvation = -16406.082962 eV Core-core repulsion = 13761.004152 eV Total energy + Delta-G solvation = -2645.078810 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.51589 -38.89841 -36.83980 -34.96297 -32.76036 -31.59519 -31.14697 -29.14409 -26.24817 -24.91685 -23.59273 -22.54618 -21.49836 -21.40429 -18.51615 -18.12847 -16.89860 -16.63086 -16.42932 -15.88338 -15.67145 -15.33416 -14.99644 -14.29617 -14.16754 -13.91961 -13.40630 -13.19969 -13.10874 -12.81067 -12.77347 -12.48593 -12.34884 -12.07770 -11.95326 -11.37203 -11.22227 -11.00638 -10.82584 -10.57885 -10.52631 -9.54441 -8.17308 -6.27949 0.52270 1.15670 1.42436 1.45803 1.53497 1.86865 2.42909 2.55641 3.15753 3.16551 3.31042 3.72273 3.81229 3.99256 4.10816 4.17101 4.25388 4.56740 4.68160 4.70340 4.72340 4.93525 5.00917 5.11414 5.15651 5.35245 5.45577 5.47734 5.61162 5.70337 5.76716 6.04478 6.17377 6.35129 6.88398 7.10630 7.40886 8.94706 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.040244 B = 0.005056 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.586634 B = 5536.346309 C = 5957.329474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.141 3.859 3 H 0.126 0.874 4 C -0.100 4.100 5 C 0.155 3.845 6 H 0.125 0.875 7 N -0.660 5.660 8 C 0.082 3.918 9 C 0.034 3.966 10 C -0.543 4.543 11 H 0.059 0.941 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.965 3.035 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.264 1.264 18 C 0.211 3.789 19 N -0.569 5.569 20 C 0.191 3.809 21 N -0.324 5.324 22 N -0.390 5.390 23 H 0.058 0.942 24 H 0.115 0.885 25 H 0.050 0.950 26 H 0.149 0.851 27 H 0.099 0.901 28 H 0.339 0.661 29 H 0.070 0.930 30 H 0.019 0.981 31 H -0.016 1.016 32 H 0.002 0.998 33 H 0.263 0.737 34 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.000 16.563 3.724 19.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.041 3.959 3 H 0.144 0.856 4 C -0.139 4.139 5 C 0.041 3.959 6 H 0.142 0.858 7 N -0.288 5.288 8 C -0.047 4.047 9 C -0.003 4.003 10 C -0.581 4.581 11 H 0.077 0.923 12 C -0.196 4.196 13 N -0.572 5.572 14 Si 0.789 3.211 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.189 1.189 18 C -0.069 4.069 19 N -0.298 5.298 20 C -0.111 4.111 21 N -0.152 5.152 22 N -0.182 5.182 23 H 0.077 0.923 24 H 0.133 0.867 25 H 0.069 0.931 26 H 0.167 0.833 27 H 0.118 0.882 28 H 0.157 0.843 29 H 0.089 0.911 30 H 0.037 0.963 31 H 0.003 0.997 32 H 0.020 0.980 33 H 0.072 0.928 34 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -10.362 16.880 3.525 20.117 hybrid contribution 0.880 -1.077 1.276 1.887 sum -9.482 15.803 4.801 19.044 Atomic orbital electron populations 1.22037 0.91271 1.02949 1.04540 1.22668 0.97590 0.96905 0.78766 0.85630 1.23132 0.94282 1.00204 0.96274 1.21492 1.01817 0.93727 0.78827 0.85778 1.60789 1.06977 1.02820 1.58240 1.21871 0.87723 0.97237 0.97840 1.18885 0.95122 0.91316 0.95017 1.21567 0.95958 1.02357 1.38257 0.92296 1.25932 1.02163 0.96775 0.94688 1.70099 1.36061 1.10722 1.40305 0.85511 0.79480 0.77463 0.78654 1.19572 1.20770 1.18872 1.26992 0.89733 0.90763 0.99365 1.70142 1.31632 1.29918 0.98149 1.26722 0.90116 0.93595 1.00712 1.77834 1.25392 1.23749 0.88233 1.52067 1.27141 1.33053 1.05909 0.92295 0.86692 0.93072 0.83318 0.88211 0.84310 0.91147 0.96295 0.99734 0.97971 0.92788 0.73728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.49 71.98 0.68 -1.31 16 2 C 0.14 2.27 4.13 45.40 0.19 2.45 16 3 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 4 C -0.10 -1.52 6.39 31.61 0.20 -1.32 16 5 C 0.16 3.92 3.24 44.95 0.15 4.07 16 6 H 0.12 2.87 7.87 -2.39 -0.02 2.85 16 7 N -0.66 -21.99 6.30 -491.38 -3.09 -25.08 16 8 C 0.08 3.43 5.46 86.30 0.47 3.91 16 9 C 0.03 1.83 5.23 29.85 0.16 1.98 16 10 C -0.54 -31.43 9.11 25.60 0.23 -31.19 16 11 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 12 C 0.00 0.14 5.46 84.65 0.46 0.60 16 13 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 14 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 15 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 17 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 18 C 0.21 6.46 7.93 138.47 1.10 7.56 16 19 N -0.57 -20.14 11.20 -191.10 -2.14 -22.28 16 20 C 0.19 5.66 13.03 180.81 2.36 8.01 16 21 N -0.32 -9.63 12.80 -61.33 -0.79 -10.42 16 22 N -0.39 -10.33 4.53 -314.14 -1.42 -11.75 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.11 0.75 8.14 -2.38 -0.02 0.74 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.15 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.10 1.59 7.86 -2.39 -0.02 1.57 16 28 H 0.34 12.09 8.49 -89.69 -0.76 11.33 16 29 H 0.07 2.80 8.08 -2.39 -0.02 2.78 16 30 H 0.02 0.85 8.10 -2.39 -0.02 0.83 16 31 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 32 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 33 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 34 H 0.25 5.21 8.06 -2.91 -0.02 5.19 16 Total: -1.00 -74.30 289.93 1.19 -73.11 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.33 Total: 11.88 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 5.99 Total: -5.24 kcal Atomic # 7 Polarization: -119.46 SS G_CDS: -7.16 Total: -126.61 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -74.30 1.19 -73.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926133940.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.522 kcal (2) G-P(sol) polarization free energy of solvation -74.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds