Wall clock time and date at job start Sun Mar 29 2020 21:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.27968 * 2 1 4 4 C 1.54431 * 110.24142 * 121.97081 * 2 1 3 5 5 C 1.54568 * 101.66647 * 144.50372 * 4 2 1 6 6 H 1.09006 * 110.48290 * 93.72275 * 5 4 2 7 7 N 1.46898 * 110.48334 * 216.35429 * 5 4 2 8 8 C 1.46898 * 111.00085 * 201.25249 * 7 5 4 9 9 C 1.53003 * 109.46914 * 179.97438 * 8 7 5 10 10 C 1.50701 * 109.47326 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99664 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00271 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99973 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99972 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.47201 * 90.00090 * 14 12 10 16 16 H 1.48501 * 109.47071 * 210.00126 * 14 12 10 17 17 H 1.48502 * 109.47083 * 329.99946 * 14 12 10 18 18 C 1.51480 * 104.22298 * 335.03869 * 5 4 2 19 19 N 1.31164 * 141.94192 * 196.54138 * 18 5 4 20 20 C 1.33165 * 109.83621 * 179.80953 * 19 18 5 21 21 N 1.30653 * 108.94795 * 0.03675 * 20 19 18 22 22 N 1.34116 * 110.04513 * 16.45793 * 18 5 4 23 23 H 1.08996 * 109.46839 * 180.50597 * 1 2 3 24 24 H 1.08996 * 109.46945 * 300.50799 * 1 2 3 25 25 H 1.08998 * 109.47201 * 60.50807 * 1 2 3 26 26 H 1.08996 * 110.98839 * 26.40486 * 4 2 1 27 27 H 1.09000 * 111.01809 * 262.61113 * 4 2 1 28 28 H 1.00899 * 111.00074 * 325.21035 * 7 5 4 29 29 H 1.08999 * 109.47497 * 299.99653 * 8 7 5 30 30 H 1.08999 * 109.47480 * 60.00371 * 8 7 5 31 31 H 1.08999 * 109.47609 * 300.00259 * 9 8 7 32 32 H 1.09006 * 109.47242 * 60.00140 * 9 8 7 33 33 H 0.97001 * 120.00072 * 179.97438 * 13 12 10 34 34 H 1.07996 * 125.52550 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9078 1.0224 0.0000 4 6 2.0644 -0.7672 1.2292 5 6 3.3288 -1.4423 0.6508 6 1 4.2082 -0.8244 0.8327 7 7 3.5092 -2.7793 1.2322 8 6 4.9039 -3.2236 1.1077 9 6 5.0522 -4.6164 1.7235 10 6 6.4828 -5.0726 1.5952 11 1 7.2132 -4.4329 1.1222 12 6 6.8591 -6.3066 2.0817 13 7 8.1077 -6.7045 1.9702 14 14 5.5957 -7.4132 2.8992 15 1 4.9656 -8.2854 1.8758 16 1 6.2642 -8.2553 3.9236 17 1 4.5528 -6.5787 3.5483 18 6 3.0503 -1.5436 -0.8347 19 7 3.4548 -2.1556 -1.9220 20 6 2.7243 -1.7588 -2.9623 21 7 1.8424 -0.8859 -2.5531 22 7 2.0382 -0.7295 -1.1692 23 1 -0.3633 -1.0276 0.0091 24 1 -0.3633 0.5217 0.8854 25 1 -0.3633 0.5059 -0.8945 26 1 1.3442 -1.5120 1.5678 27 1 2.3224 -0.0815 2.0362 28 1 3.2082 -2.7985 2.1950 29 1 5.1808 -3.2605 0.0541 30 1 5.5562 -2.5243 1.6306 31 1 4.7754 -4.5793 2.7771 32 1 4.3999 -5.3161 1.2009 33 1 8.3726 -7.5724 2.3129 34 1 2.8420 -2.1025 -3.9793 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926133941.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:13 Heat of formation + Delta-G solvation = 103.249434 kcal Electronic energy + Delta-G solvation = -16436.686076 eV Core-core repulsion = 13792.857757 eV Total energy + Delta-G solvation = -2643.828319 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.36243 -37.92470 -35.53939 -32.95758 -31.43873 -30.63251 -30.01385 -28.06374 -24.79867 -23.51951 -22.72505 -20.89995 -20.14984 -20.03267 -17.27169 -16.71884 -15.87321 -15.27284 -14.77240 -14.55009 -14.39574 -14.21187 -13.94527 -13.18496 -13.08348 -12.57786 -12.52603 -12.22828 -11.86058 -11.63407 -11.35247 -11.24659 -10.99058 -10.19532 -9.80332 -9.75822 -9.70720 -9.61755 -9.39973 -9.18887 -8.50140 -8.20396 -6.00358 -3.98424 1.70692 2.10680 3.11327 3.35768 3.42277 3.45739 3.66484 4.00861 4.12322 4.42091 4.49401 4.65122 4.75203 4.96474 5.01609 5.20140 5.29692 5.34193 5.41097 5.47977 5.59594 5.76003 6.18481 6.24416 6.49277 6.57730 6.68460 6.81962 7.02044 7.36832 7.50050 7.67883 7.86696 8.31709 8.57195 9.04362 9.61818 11.13097 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.036607 B = 0.005424 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.704037 B = 5160.788494 C = 5523.183019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.156 3.844 3 H 0.099 0.901 4 C -0.131 4.131 5 C 0.156 3.844 6 H 0.084 0.916 7 N -0.676 5.676 8 C 0.071 3.929 9 C -0.008 4.008 10 C -0.519 4.519 11 H 0.072 0.928 12 C 0.067 3.933 13 N -0.904 5.904 14 Si 0.882 3.118 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.266 1.266 18 C 0.283 3.717 19 N -0.518 5.518 20 C 0.199 3.801 21 N -0.310 5.310 22 N -0.401 5.401 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.103 0.897 27 H 0.107 0.893 28 H 0.345 0.655 29 H 0.078 0.922 30 H 0.026 0.974 31 H 0.012 0.988 32 H 0.021 0.979 33 H 0.263 0.737 34 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.117 14.920 -1.186 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.053 3.947 3 H 0.117 0.883 4 C -0.170 4.170 5 C 0.042 3.958 6 H 0.101 0.899 7 N -0.309 5.309 8 C -0.057 4.057 9 C -0.046 4.046 10 C -0.557 4.557 11 H 0.090 0.910 12 C -0.134 4.134 13 N -0.543 5.543 14 Si 0.710 3.290 15 H -0.203 1.203 16 H -0.216 1.216 17 H -0.191 1.191 18 C 0.004 3.996 19 N -0.245 5.245 20 C -0.104 4.104 21 N -0.137 5.137 22 N -0.193 5.193 23 H 0.085 0.915 24 H 0.098 0.902 25 H 0.087 0.913 26 H 0.121 0.879 27 H 0.126 0.874 28 H 0.165 0.835 29 H 0.097 0.903 30 H 0.044 0.956 31 H 0.031 0.969 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -15.602 14.669 -2.264 21.535 hybrid contribution -0.073 -0.178 1.026 1.044 sum -15.675 14.492 -1.237 21.383 Atomic orbital electron populations 1.22052 0.92498 1.03606 1.03289 1.22009 0.96499 0.95783 0.80361 0.88304 1.23219 0.97115 1.00263 0.96436 1.20635 0.97707 0.92699 0.84784 0.89887 1.60514 1.25997 1.20886 1.23470 1.22126 0.83680 0.97756 1.02100 1.19529 0.97787 0.92016 0.95239 1.21047 0.93220 1.02701 1.38753 0.91019 1.24994 0.95131 0.97685 0.95567 1.69917 1.16615 1.20705 1.47072 0.86742 0.81891 0.80817 0.79568 1.20255 1.21560 1.19062 1.25131 0.88314 0.89212 0.96921 1.70193 1.30180 1.27306 0.96829 1.26133 0.90640 0.93742 0.99870 1.77932 1.25049 1.23818 0.86924 1.51645 1.27949 1.33832 1.05847 0.91452 0.90243 0.91347 0.87891 0.87415 0.83515 0.90347 0.95605 0.96935 0.96032 0.92760 0.76421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.48 37.16 0.35 -0.85 16 2 C 0.16 1.44 4.14 -66.97 -0.28 1.16 16 3 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.13 -1.08 6.12 -25.16 -0.15 -1.23 16 5 C 0.16 2.02 3.24 -67.66 -0.22 1.80 16 6 H 0.08 1.01 7.88 -51.93 -0.41 0.60 16 7 N -0.68 -10.70 6.30 -106.67 -0.67 -11.38 16 8 C 0.07 1.42 5.46 -3.82 -0.02 1.40 16 9 C -0.01 -0.19 4.30 -27.88 -0.12 -0.31 16 10 C -0.52 -14.97 9.66 -34.44 -0.33 -15.30 16 11 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 12 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 13 N -0.90 -28.21 13.96 55.43 0.77 -27.43 16 14 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 17 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 18 C 0.28 4.53 8.18 -155.31 -1.27 3.26 16 19 N -0.52 -9.40 11.20 -11.75 -0.13 -9.53 16 20 C 0.20 3.03 13.03 -91.93 -1.20 1.83 16 21 N -0.31 -4.76 12.80 29.26 0.37 -4.39 16 22 N -0.40 -5.64 4.53 -50.63 -0.23 -5.87 16 23 H 0.07 0.61 8.13 -51.93 -0.42 0.18 16 24 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.10 0.83 7.85 -51.93 -0.41 0.43 16 27 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.35 4.64 8.46 -39.29 -0.33 4.31 16 29 H 0.08 1.75 8.10 -51.93 -0.42 1.33 16 30 H 0.03 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 32 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 33 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.22 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 286.28 15.07 4.31 4.31 Total: -1.00 -35.34 286.28 -8.46 -43.79 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -4.88 Total: -0.51 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -3.34 Total: -6.36 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: 0.11 Total: -58.60 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -35.34 -8.46 -43.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926133941.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.044 kcal (2) G-P(sol) polarization free energy of solvation -35.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds