Wall clock time and date at job start Sun Mar 29 2020 21:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.27968 * 2 1 4 4 C 1.54431 * 110.24142 * 121.97081 * 2 1 3 5 5 C 1.54568 * 101.66647 * 144.50372 * 4 2 1 6 6 H 1.09006 * 110.48290 * 93.72275 * 5 4 2 7 7 N 1.46898 * 110.48334 * 216.35429 * 5 4 2 8 8 C 1.46898 * 111.00085 * 201.25249 * 7 5 4 9 9 C 1.53003 * 109.46914 * 179.97438 * 8 7 5 10 10 C 1.50701 * 109.47326 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99664 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00271 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99973 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99972 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.47201 * 90.00090 * 14 12 10 16 16 H 1.48501 * 109.47071 * 210.00126 * 14 12 10 17 17 H 1.48502 * 109.47083 * 329.99946 * 14 12 10 18 18 C 1.51480 * 104.22298 * 335.03869 * 5 4 2 19 19 N 1.31164 * 141.94192 * 196.54138 * 18 5 4 20 20 C 1.33165 * 109.83621 * 179.80953 * 19 18 5 21 21 N 1.30653 * 108.94795 * 0.03675 * 20 19 18 22 22 N 1.34116 * 110.04513 * 16.45793 * 18 5 4 23 23 H 1.08996 * 109.46839 * 180.50597 * 1 2 3 24 24 H 1.08996 * 109.46945 * 300.50799 * 1 2 3 25 25 H 1.08998 * 109.47201 * 60.50807 * 1 2 3 26 26 H 1.08996 * 110.98839 * 26.40486 * 4 2 1 27 27 H 1.09000 * 111.01809 * 262.61113 * 4 2 1 28 28 H 1.00899 * 111.00074 * 325.21035 * 7 5 4 29 29 H 1.08999 * 109.47497 * 299.99653 * 8 7 5 30 30 H 1.08999 * 109.47480 * 60.00371 * 8 7 5 31 31 H 1.08999 * 109.47609 * 300.00259 * 9 8 7 32 32 H 1.09006 * 109.47242 * 60.00140 * 9 8 7 33 33 H 0.97001 * 120.00072 * 179.97438 * 13 12 10 34 34 H 1.07996 * 125.52550 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9078 1.0224 0.0000 4 6 2.0644 -0.7672 1.2292 5 6 3.3288 -1.4423 0.6508 6 1 4.2082 -0.8244 0.8327 7 7 3.5092 -2.7793 1.2322 8 6 4.9039 -3.2236 1.1077 9 6 5.0522 -4.6164 1.7235 10 6 6.4828 -5.0726 1.5952 11 1 7.2132 -4.4329 1.1222 12 6 6.8591 -6.3066 2.0817 13 7 8.1077 -6.7045 1.9702 14 14 5.5957 -7.4132 2.8992 15 1 4.9656 -8.2854 1.8758 16 1 6.2642 -8.2553 3.9236 17 1 4.5528 -6.5787 3.5483 18 6 3.0503 -1.5436 -0.8347 19 7 3.4548 -2.1556 -1.9220 20 6 2.7243 -1.7588 -2.9623 21 7 1.8424 -0.8859 -2.5531 22 7 2.0382 -0.7295 -1.1692 23 1 -0.3633 -1.0276 0.0091 24 1 -0.3633 0.5217 0.8854 25 1 -0.3633 0.5059 -0.8945 26 1 1.3442 -1.5120 1.5678 27 1 2.3224 -0.0815 2.0362 28 1 3.2082 -2.7985 2.1950 29 1 5.1808 -3.2605 0.0541 30 1 5.5562 -2.5243 1.6306 31 1 4.7754 -4.5793 2.7771 32 1 4.3999 -5.3161 1.2009 33 1 8.3726 -7.5724 2.3129 34 1 2.8420 -2.1025 -3.9793 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926133941.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:13 Heat of formation + Delta-G solvation = 77.657147 kcal Electronic energy + Delta-G solvation = -16437.795841 eV Core-core repulsion = 13792.857757 eV Total energy + Delta-G solvation = -2644.938083 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.43429 -38.93886 -36.86043 -34.91515 -32.89987 -31.62948 -31.40063 -29.28047 -26.13770 -24.96261 -23.69112 -22.37517 -21.43827 -21.14132 -18.93374 -18.16438 -16.99357 -16.39720 -16.37252 -15.68695 -15.62333 -15.55411 -15.17936 -14.65694 -14.44421 -13.94634 -13.38728 -13.27022 -13.06170 -12.89396 -12.79812 -12.42614 -12.22461 -11.96465 -11.69598 -11.52335 -11.38380 -10.90632 -10.74880 -10.73130 -10.48501 -9.49692 -8.26949 -6.31412 0.59462 1.20381 1.39328 1.41317 1.53082 1.95054 2.39293 2.73362 3.05493 3.08960 3.25490 3.62422 3.84150 3.99631 4.10669 4.18469 4.30313 4.51818 4.54978 4.69327 4.71387 4.84925 4.92681 5.00079 5.16967 5.30846 5.41051 5.51678 5.54435 5.66434 5.67422 5.98322 6.28568 6.53497 6.77195 7.19469 7.33088 8.90082 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.036607 B = 0.005424 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.704037 B = 5160.788494 C = 5523.183019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.143 3.857 3 H 0.124 0.876 4 C -0.112 4.112 5 C 0.151 3.849 6 H 0.093 0.907 7 N -0.679 5.679 8 C 0.089 3.911 9 C -0.002 4.002 10 C -0.532 4.532 11 H 0.029 0.971 12 C 0.004 3.996 13 N -0.953 5.953 14 Si 0.955 3.045 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.239 1.239 18 C 0.259 3.741 19 N -0.570 5.570 20 C 0.190 3.810 21 N -0.326 5.326 22 N -0.397 5.397 23 H 0.051 0.949 24 H 0.116 0.884 25 H 0.056 0.944 26 H 0.108 0.892 27 H 0.153 0.847 28 H 0.363 0.637 29 H 0.047 0.953 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.014 0.986 33 H 0.266 0.734 34 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.790 16.064 0.786 23.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.043 3.957 3 H 0.142 0.858 4 C -0.151 4.151 5 C 0.038 3.962 6 H 0.110 0.890 7 N -0.313 5.313 8 C -0.040 4.040 9 C -0.039 4.039 10 C -0.571 4.571 11 H 0.047 0.953 12 C -0.192 4.192 13 N -0.594 5.594 14 Si 0.779 3.221 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.162 1.162 18 C -0.020 4.020 19 N -0.299 5.299 20 C -0.112 4.112 21 N -0.154 5.154 22 N -0.188 5.188 23 H 0.070 0.930 24 H 0.134 0.866 25 H 0.075 0.925 26 H 0.127 0.873 27 H 0.171 0.829 28 H 0.185 0.815 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.032 0.968 33 H 0.075 0.925 34 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -18.312 15.858 -0.269 24.226 hybrid contribution 0.801 -0.444 0.345 0.979 sum -17.511 15.414 0.077 23.329 Atomic orbital electron populations 1.22035 0.91210 1.02971 1.04532 1.22577 0.97628 0.96702 0.78820 0.85833 1.23328 0.94370 1.00606 0.96779 1.20929 1.00614 0.91448 0.83220 0.88994 1.60236 1.22811 1.23363 1.24918 1.21657 0.86573 0.96006 0.99716 1.19406 0.94195 0.93974 0.96369 1.21409 0.95117 1.02490 1.38072 0.95278 1.26017 0.97391 0.99483 0.96342 1.70076 1.19128 1.21541 1.48625 0.85586 0.79370 0.78631 0.78558 1.19995 1.20879 1.16226 1.25688 0.88911 0.89517 0.97842 1.70118 1.32057 1.29331 0.98378 1.26686 0.90209 0.93609 1.00690 1.77824 1.25348 1.24028 0.88193 1.52020 1.27319 1.33489 1.05963 0.93014 0.86567 0.92454 0.87321 0.82876 0.81534 0.93483 0.95158 0.95157 0.96803 0.92496 0.73883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.48 71.98 0.68 -1.13 16 2 C 0.14 2.15 4.14 45.41 0.19 2.34 16 3 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 4 C -0.11 -1.36 6.12 31.61 0.19 -1.16 16 5 C 0.15 3.58 3.24 44.95 0.15 3.73 16 6 H 0.09 2.03 7.88 -2.38 -0.02 2.01 16 7 N -0.68 -20.13 6.30 -491.38 -3.10 -23.23 16 8 C 0.09 3.55 5.46 86.30 0.47 4.02 16 9 C 0.00 -0.08 4.30 29.85 0.13 0.05 16 10 C -0.53 -31.45 9.66 25.60 0.25 -31.20 16 11 H 0.03 1.90 7.99 -2.91 -0.02 1.87 16 12 C 0.00 0.25 5.47 84.65 0.46 0.71 16 13 N -0.95 -60.95 13.96 21.45 0.30 -60.65 16 14 Si 0.96 44.92 27.47 68.60 1.88 46.81 16 15 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 17 H -0.24 -10.14 6.54 99.48 0.65 -9.48 16 18 C 0.26 8.13 8.18 138.47 1.13 9.26 16 19 N -0.57 -21.09 11.20 -191.09 -2.14 -23.23 16 20 C 0.19 5.86 13.03 180.81 2.36 8.22 16 21 N -0.33 -9.90 12.80 -61.33 -0.79 -10.68 16 22 N -0.40 -10.58 4.53 -314.10 -1.42 -12.00 16 23 H 0.05 0.80 8.13 -2.39 -0.02 0.78 16 24 H 0.12 0.56 8.14 -2.39 -0.02 0.55 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.11 1.26 7.85 -2.39 -0.02 1.24 16 27 H 0.15 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.36 8.50 8.46 -89.69 -0.76 7.74 16 29 H 0.05 2.16 8.10 -2.39 -0.02 2.14 16 30 H 0.03 1.16 8.08 -2.39 -0.02 1.14 16 31 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 32 H 0.01 0.67 7.57 -2.38 -0.02 0.65 16 33 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 34 H 0.25 5.47 8.06 -2.91 -0.02 5.44 16 Total: -1.00 -80.37 286.28 1.03 -79.34 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 0.28 Total: 8.80 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 6.01 Total: -5.16 kcal Atomic # 7 Polarization: -122.64 SS G_CDS: -7.15 Total: -129.79 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.81 kcal Total: -80.37 1.03 -79.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926133941.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.998 kcal (2) G-P(sol) polarization free energy of solvation -80.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds