Wall clock time and date at job start Sun Mar 29 2020 21:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.28246 * 2 1 4 4 C 1.54426 * 110.24310 * 121.96570 * 2 1 3 5 5 C 1.54571 * 101.67048 * 144.50503 * 4 2 1 6 6 H 1.08996 * 110.59983 * 216.30243 * 5 4 2 7 7 N 1.46899 * 110.48382 * 93.72562 * 5 4 2 8 8 C 1.46900 * 111.00450 * 158.75058 * 7 5 4 9 9 C 1.52994 * 109.47313 * 180.02562 * 8 7 5 10 10 C 1.50703 * 109.47431 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99535 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00372 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99748 * 0.02562 * 12 10 9 14 14 Si 1.86790 * 119.99979 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47362 * 90.00182 * 14 12 10 16 16 H 1.48506 * 109.47234 * 210.00351 * 14 12 10 17 17 H 1.48501 * 109.47382 * 329.99936 * 14 12 10 18 18 C 1.51482 * 104.21809 * 335.04032 * 5 4 2 19 19 N 1.31158 * 141.93827 * 196.53911 * 18 5 4 20 20 C 1.33160 * 109.83506 * 179.81121 * 19 18 5 21 21 N 1.30654 * 108.94963 * 0.03479 * 20 19 18 22 22 N 1.34118 * 110.04862 * 16.45697 * 18 5 4 23 23 H 1.09005 * 109.46943 * 180.51327 * 1 2 3 24 24 H 1.08999 * 109.47540 * 300.51109 * 1 2 3 25 25 H 1.08996 * 109.47057 * 60.51485 * 1 2 3 26 26 H 1.09004 * 110.99215 * 26.41075 * 4 2 1 27 27 H 1.09000 * 110.98853 * 262.59894 * 4 2 1 28 28 H 1.00900 * 111.00010 * 282.70589 * 7 5 4 29 29 H 1.09002 * 109.46481 * 300.00087 * 8 7 5 30 30 H 1.08997 * 109.46945 * 60.00064 * 8 7 5 31 31 H 1.09005 * 109.47319 * 300.00041 * 9 8 7 32 32 H 1.09004 * 109.47400 * 59.99543 * 9 8 7 33 33 H 0.96993 * 119.99677 * 180.02562 * 13 12 10 34 34 H 1.07999 * 125.52729 * 180.30345 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9078 1.0224 0.0000 4 6 2.0643 -0.7670 1.2292 5 6 3.3288 -1.4423 0.6510 6 1 3.4650 -2.4341 1.0819 7 7 4.5139 -0.6096 0.8961 8 6 5.7435 -1.4103 0.8269 9 6 6.9533 -0.5107 1.0874 10 6 8.2147 -1.3323 1.0171 11 1 8.1590 -2.3904 0.8079 12 6 9.4399 -0.7332 1.2197 13 7 9.5077 0.5552 1.4750 14 14 11.0034 -1.7515 1.1318 15 1 11.5143 -1.7548 -0.2626 16 1 12.0277 -1.1647 2.0329 17 1 10.7114 -3.1446 1.5553 18 6 3.0502 -1.5436 -0.8346 19 7 3.4548 -2.1557 -1.9217 20 6 2.7244 -1.7589 -2.9620 21 7 1.8424 -0.8861 -2.5530 22 7 2.0382 -0.7296 -1.1691 23 1 -0.3633 -1.0277 0.0092 24 1 -0.3634 0.5217 0.8853 25 1 -0.3633 0.5058 -0.8945 26 1 1.3442 -1.5120 1.5679 27 1 2.3224 -0.0808 2.0357 28 1 4.5506 0.1658 0.2515 29 1 5.7074 -2.1973 1.5803 30 1 5.8300 -1.8585 -0.1629 31 1 6.9896 0.2766 0.3344 32 1 6.8666 -0.0628 2.0774 33 1 10.3696 0.9767 1.6171 34 1 2.8392 -2.1059 -3.9783 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926133942.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:15 Heat of formation + Delta-G solvation = 96.713344 kcal Electronic energy + Delta-G solvation = -16452.739117 eV Core-core repulsion = 13808.627373 eV Total energy + Delta-G solvation = -2644.111745 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.43887 -37.91946 -35.33078 -33.01360 -31.39919 -30.62153 -29.70462 -27.79711 -24.77006 -23.77620 -22.43287 -20.74955 -20.60041 -20.23362 -17.03606 -16.24221 -15.81465 -15.43806 -14.96355 -14.57001 -14.36068 -14.23996 -13.64262 -13.08722 -12.88795 -12.59874 -12.29868 -12.17597 -11.63312 -11.53004 -11.15896 -11.10482 -10.93117 -10.51785 -10.12382 -9.85168 -9.67792 -9.58720 -9.39087 -9.14504 -8.37499 -8.17510 -5.99307 -4.01523 1.65031 2.10369 3.02041 3.34331 3.40229 3.43937 3.60072 4.18033 4.28092 4.38072 4.50354 4.76961 4.85604 4.98596 5.22764 5.24525 5.35359 5.37305 5.48390 5.67287 5.69855 5.80456 6.23491 6.40668 6.44933 6.52288 6.65908 6.93395 7.20657 7.54497 7.71308 7.84769 8.03917 8.22483 8.42418 9.05232 9.62425 11.12280 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.038685 B = 0.005169 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.629438 B = 5415.332954 C = 5823.806488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.148 3.852 3 H 0.102 0.898 4 C -0.117 4.117 5 C 0.156 3.844 6 H 0.114 0.886 7 N -0.662 5.662 8 C 0.059 3.941 9 C 0.026 3.974 10 C -0.520 4.520 11 H 0.056 0.944 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.273 1.273 18 C 0.228 3.772 19 N -0.526 5.526 20 C 0.196 3.804 21 N -0.306 5.306 22 N -0.392 5.392 23 H 0.063 0.937 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.093 0.907 27 H 0.121 0.879 28 H 0.340 0.660 29 H 0.064 0.936 30 H 0.031 0.969 31 H 0.012 0.988 32 H 0.026 0.974 33 H 0.260 0.740 34 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.777 -1.638 -1.526 17.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.046 3.954 3 H 0.120 0.880 4 C -0.157 4.157 5 C 0.042 3.958 6 H 0.132 0.868 7 N -0.291 5.291 8 C -0.068 4.068 9 C -0.011 4.011 10 C -0.559 4.559 11 H 0.074 0.926 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.052 4.052 19 N -0.254 5.254 20 C -0.107 4.107 21 N -0.134 5.134 22 N -0.184 5.184 23 H 0.082 0.918 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.111 0.889 27 H 0.139 0.861 28 H 0.158 0.842 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.031 0.969 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -18.095 -1.302 -1.339 18.191 hybrid contribution 1.039 -0.548 -1.177 1.663 sum -17.056 -1.850 -2.517 17.340 Atomic orbital electron populations 1.22039 0.92606 1.03246 1.03416 1.22198 0.96241 0.96458 0.80474 0.87993 1.23062 0.95514 1.00633 0.96466 1.21082 0.92781 0.99901 0.82063 0.86845 1.61024 1.01982 1.10812 1.55322 1.22343 0.88239 0.96722 0.99508 1.19063 0.89986 0.94450 0.97602 1.21153 0.91117 0.95204 1.48380 0.92587 1.24992 0.99176 0.94930 0.95231 1.69970 1.25004 1.09788 1.48634 0.86573 0.83000 0.80416 0.77891 1.20694 1.21230 1.19801 1.26603 0.88987 0.90509 0.99068 1.70172 1.29691 1.28576 0.96968 1.26117 0.90716 0.94015 0.99826 1.77922 1.25155 1.23099 0.87221 1.51739 1.27577 1.33301 1.05733 0.91773 0.90056 0.91460 0.88861 0.86115 0.84188 0.91704 0.95015 0.96941 0.95593 0.93008 0.76454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.48 37.16 0.35 -0.89 16 2 C 0.15 1.51 4.13 -66.98 -0.28 1.24 16 3 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 4 C -0.12 -1.08 6.39 -25.16 -0.16 -1.24 16 5 C 0.16 2.10 3.24 -67.66 -0.22 1.88 16 6 H 0.11 1.48 7.87 -51.93 -0.41 1.07 16 7 N -0.66 -10.91 6.29 -106.67 -0.67 -11.58 16 8 C 0.06 1.23 5.46 -3.83 -0.02 1.21 16 9 C 0.03 0.68 5.23 -27.88 -0.15 0.54 16 10 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 11 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 14 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 18 C 0.23 3.58 7.93 -155.32 -1.23 2.35 16 19 N -0.53 -9.17 11.20 -11.75 -0.13 -9.30 16 20 C 0.20 2.94 13.03 -91.93 -1.20 1.74 16 21 N -0.31 -4.75 12.80 29.26 0.37 -4.37 16 22 N -0.39 -5.59 4.53 -50.63 -0.23 -5.82 16 23 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 24 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.09 0.67 7.91 -51.93 -0.41 0.26 16 27 H 0.12 0.98 8.08 -51.93 -0.42 0.56 16 28 H 0.34 5.79 8.49 -39.29 -0.33 5.46 16 29 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 30 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.22 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 289.91 15.07 4.37 4.37 Total: -1.00 -33.32 289.91 -8.80 -42.12 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.91 Total: 0.72 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -3.31 Total: -6.69 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.08 Total: -57.30 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.32 -8.80 -42.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926133942.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.832 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds