Wall clock time and date at job start Sun Mar 29 2020 21:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.28246 * 2 1 4 4 C 1.54426 * 110.24310 * 121.96570 * 2 1 3 5 5 C 1.54571 * 101.67048 * 144.50503 * 4 2 1 6 6 H 1.08996 * 110.59983 * 216.30243 * 5 4 2 7 7 N 1.46899 * 110.48382 * 93.72562 * 5 4 2 8 8 C 1.46900 * 111.00450 * 158.75058 * 7 5 4 9 9 C 1.52994 * 109.47313 * 180.02562 * 8 7 5 10 10 C 1.50703 * 109.47431 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99535 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00372 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99748 * 0.02562 * 12 10 9 14 14 Si 1.86790 * 119.99979 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47362 * 90.00182 * 14 12 10 16 16 H 1.48506 * 109.47234 * 210.00351 * 14 12 10 17 17 H 1.48501 * 109.47382 * 329.99936 * 14 12 10 18 18 C 1.51482 * 104.21809 * 335.04032 * 5 4 2 19 19 N 1.31158 * 141.93827 * 196.53911 * 18 5 4 20 20 C 1.33160 * 109.83506 * 179.81121 * 19 18 5 21 21 N 1.30654 * 108.94963 * 0.03479 * 20 19 18 22 22 N 1.34118 * 110.04862 * 16.45697 * 18 5 4 23 23 H 1.09005 * 109.46943 * 180.51327 * 1 2 3 24 24 H 1.08999 * 109.47540 * 300.51109 * 1 2 3 25 25 H 1.08996 * 109.47057 * 60.51485 * 1 2 3 26 26 H 1.09004 * 110.99215 * 26.41075 * 4 2 1 27 27 H 1.09000 * 110.98853 * 262.59894 * 4 2 1 28 28 H 1.00900 * 111.00010 * 282.70589 * 7 5 4 29 29 H 1.09002 * 109.46481 * 300.00087 * 8 7 5 30 30 H 1.08997 * 109.46945 * 60.00064 * 8 7 5 31 31 H 1.09005 * 109.47319 * 300.00041 * 9 8 7 32 32 H 1.09004 * 109.47400 * 59.99543 * 9 8 7 33 33 H 0.96993 * 119.99677 * 180.02562 * 13 12 10 34 34 H 1.07999 * 125.52729 * 180.30345 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9078 1.0224 0.0000 4 6 2.0643 -0.7670 1.2292 5 6 3.3288 -1.4423 0.6510 6 1 3.4650 -2.4341 1.0819 7 7 4.5139 -0.6096 0.8961 8 6 5.7435 -1.4103 0.8269 9 6 6.9533 -0.5107 1.0874 10 6 8.2147 -1.3323 1.0171 11 1 8.1590 -2.3904 0.8079 12 6 9.4399 -0.7332 1.2197 13 7 9.5077 0.5552 1.4750 14 14 11.0034 -1.7515 1.1318 15 1 11.5143 -1.7548 -0.2626 16 1 12.0277 -1.1647 2.0329 17 1 10.7114 -3.1446 1.5553 18 6 3.0502 -1.5436 -0.8346 19 7 3.4548 -2.1557 -1.9217 20 6 2.7244 -1.7589 -2.9620 21 7 1.8424 -0.8861 -2.5530 22 7 2.0382 -0.7296 -1.1691 23 1 -0.3633 -1.0277 0.0092 24 1 -0.3634 0.5217 0.8853 25 1 -0.3633 0.5058 -0.8945 26 1 1.3442 -1.5120 1.5679 27 1 2.3224 -0.0808 2.0357 28 1 4.5506 0.1658 0.2515 29 1 5.7074 -2.1973 1.5803 30 1 5.8300 -1.8585 -0.1629 31 1 6.9896 0.2766 0.3344 32 1 6.8666 -0.0628 2.0774 33 1 10.3696 0.9767 1.6171 34 1 2.8392 -2.1059 -3.9783 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926133942.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:14 Heat of formation + Delta-G solvation = 74.144411 kcal Electronic energy + Delta-G solvation = -16453.717780 eV Core-core repulsion = 13808.627373 eV Total energy + Delta-G solvation = -2645.090407 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.54472 -39.00752 -36.74731 -34.94296 -32.81179 -31.62005 -31.13210 -29.15447 -26.18758 -25.24810 -23.49071 -22.53706 -21.60629 -21.40994 -18.58399 -17.88630 -17.07699 -16.61503 -16.44651 -15.98034 -15.58065 -15.35604 -15.11521 -14.49141 -14.20529 -13.78204 -13.37614 -13.20427 -13.12616 -12.86131 -12.60673 -12.52456 -12.34922 -12.11387 -11.96869 -11.39642 -11.26465 -11.04189 -10.84985 -10.61771 -10.55341 -9.63861 -8.19791 -6.30424 0.50765 1.13899 1.41686 1.42843 1.54152 1.84720 2.41683 2.57524 3.10078 3.14293 3.32644 3.57729 3.83957 4.00224 4.08986 4.21215 4.32991 4.55197 4.61619 4.67643 4.72957 4.93152 5.00514 5.06484 5.14508 5.33916 5.43393 5.45984 5.59286 5.65741 5.73102 5.99092 6.12261 6.30793 6.85907 7.08513 7.38720 8.92356 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.038685 B = 0.005169 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.629438 B = 5415.332954 C = 5823.806488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.136 3.864 3 H 0.107 0.893 4 C -0.099 4.099 5 C 0.153 3.847 6 H 0.119 0.881 7 N -0.654 5.654 8 C 0.081 3.919 9 C 0.034 3.966 10 C -0.543 4.543 11 H 0.059 0.941 12 C 0.003 3.997 13 N -0.931 5.931 14 Si 0.964 3.036 15 H -0.276 1.276 16 H -0.280 1.280 17 H -0.262 1.262 18 C 0.211 3.789 19 N -0.567 5.567 20 C 0.190 3.810 21 N -0.324 5.324 22 N -0.389 5.389 23 H 0.061 0.939 24 H 0.113 0.887 25 H 0.054 0.946 26 H 0.122 0.878 27 H 0.138 0.862 28 H 0.336 0.664 29 H 0.073 0.927 30 H 0.014 0.986 31 H -0.016 1.016 32 H 0.005 0.995 33 H 0.264 0.736 34 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.727 -2.305 -0.807 18.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.036 3.964 3 H 0.125 0.875 4 C -0.138 4.138 5 C 0.039 3.961 6 H 0.137 0.863 7 N -0.283 5.283 8 C -0.047 4.047 9 C -0.004 4.004 10 C -0.582 4.582 11 H 0.077 0.923 12 C -0.195 4.195 13 N -0.571 5.571 14 Si 0.789 3.211 15 H -0.201 1.201 16 H -0.205 1.205 17 H -0.186 1.186 18 C -0.069 4.069 19 N -0.296 5.296 20 C -0.112 4.112 21 N -0.153 5.153 22 N -0.180 5.180 23 H 0.080 0.920 24 H 0.132 0.868 25 H 0.074 0.926 26 H 0.140 0.860 27 H 0.156 0.844 28 H 0.154 0.846 29 H 0.092 0.908 30 H 0.033 0.967 31 H 0.002 0.998 32 H 0.023 0.977 33 H 0.072 0.928 34 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -19.082 -1.963 -0.607 19.193 hybrid contribution 1.278 -0.295 -1.417 1.931 sum -17.804 -2.258 -2.024 18.060 Atomic orbital electron populations 1.22010 0.90574 1.03436 1.04389 1.22632 0.97912 0.96490 0.79359 0.87514 1.23125 0.93462 1.01153 0.96064 1.21349 0.93063 1.00286 0.81375 0.86265 1.60943 1.01528 1.10540 1.55281 1.21893 0.88309 0.95917 0.98626 1.18898 0.91912 0.94223 0.95335 1.21594 0.92508 0.95687 1.48393 0.92294 1.25925 1.02878 0.96102 0.94623 1.70094 1.26069 1.11552 1.49417 0.85457 0.78470 0.79103 0.78081 1.20144 1.20516 1.18592 1.26899 0.89525 0.90862 0.99565 1.70119 1.31100 1.30175 0.98185 1.26746 0.90065 0.93628 1.00763 1.77840 1.25728 1.23496 0.88194 1.52062 1.27143 1.32924 1.05848 0.91960 0.86842 0.92642 0.85975 0.84392 0.84635 0.90840 0.96716 0.99775 0.97686 0.92751 0.73554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.48 71.98 0.68 -1.25 16 2 C 0.14 2.47 4.13 45.40 0.19 2.66 16 3 H 0.11 1.85 8.14 -2.39 -0.02 1.84 16 4 C -0.10 -1.52 6.39 31.61 0.20 -1.32 16 5 C 0.15 3.89 3.24 44.95 0.15 4.03 16 6 H 0.12 2.90 7.87 -2.39 -0.02 2.88 16 7 N -0.65 -21.23 6.29 -491.40 -3.09 -24.32 16 8 C 0.08 3.37 5.46 86.30 0.47 3.84 16 9 C 0.03 1.79 5.23 29.85 0.16 1.95 16 10 C -0.54 -31.25 9.11 25.60 0.23 -31.02 16 11 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 12 C 0.00 0.16 5.46 84.65 0.46 0.62 16 13 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 14 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 15 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 17 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 18 C 0.21 6.50 7.93 138.48 1.10 7.60 16 19 N -0.57 -19.75 11.20 -191.10 -2.14 -21.89 16 20 C 0.19 5.64 13.03 180.81 2.36 7.99 16 21 N -0.32 -9.87 12.80 -61.33 -0.79 -10.65 16 22 N -0.39 -10.66 4.53 -314.11 -1.42 -12.08 16 23 H 0.06 0.86 8.13 -2.38 -0.02 0.84 16 24 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.12 1.24 7.91 -2.39 -0.02 1.22 16 27 H 0.14 1.72 8.08 -2.39 -0.02 1.70 16 28 H 0.34 11.49 8.49 -89.69 -0.76 10.73 16 29 H 0.07 2.91 8.08 -2.39 -0.02 2.90 16 30 H 0.01 0.65 8.10 -2.39 -0.02 0.63 16 31 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 32 H 0.00 0.27 8.14 -2.38 -0.02 0.25 16 33 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 34 H 0.25 5.15 8.06 -2.91 -0.02 5.13 16 Total: -1.00 -73.05 289.91 1.20 -71.85 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.33 Total: 11.90 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 5.99 Total: -4.89 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -7.15 Total: -125.56 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -73.05 1.20 -71.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926133942.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.995 kcal (2) G-P(sol) polarization free energy of solvation -73.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds