Wall clock time and date at job start Sun Mar 29 2020 22:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36936 * 120.00338 * 2 1 4 4 H 1.07996 * 119.99873 * 203.04231 * 3 2 1 5 5 C 1.38812 * 119.99865 * 23.04333 * 3 2 1 6 6 N 1.31616 * 119.99961 * 12.93452 * 5 3 2 7 7 Si 1.86800 * 119.99885 * 192.92332 * 5 3 2 8 8 H 1.48500 * 109.46626 * 90.00146 * 7 5 3 9 9 H 1.48498 * 109.47347 * 210.00225 * 7 5 3 10 10 H 1.48503 * 109.47251 * 330.00816 * 7 5 3 11 11 C 1.46501 * 119.99323 * 179.97438 * 2 1 3 12 12 C 1.52993 * 109.47222 * 90.00309 * 11 2 1 13 13 C 1.53002 * 109.47541 * 179.97438 * 12 11 2 14 14 C 1.52993 * 109.47541 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47541 * 180.02562 * 14 13 12 16 16 C 1.47205 * 112.84446 * 48.79948 * 15 14 13 17 17 N 6.92599 * 104.31272 * 191.18620 * 2 1 3 18 18 C 1.53776 * 113.61407 * 277.50150 * 15 14 13 19 19 C 1.53788 * 87.07986 * 220.01643 * 18 15 14 20 20 C 1.53774 * 113.61960 * 179.97438 * 15 14 13 21 21 H 1.08998 * 109.47046 * 275.12683 * 1 2 3 22 22 H 1.09007 * 109.46665 * 35.12297 * 1 2 3 23 23 H 1.08992 * 109.47268 * 155.11953 * 1 2 3 24 24 H 0.96998 * 119.99567 * 179.97438 * 6 5 3 25 25 H 1.09004 * 109.47160 * 329.99866 * 11 2 1 26 26 H 1.09003 * 109.46821 * 210.00090 * 11 2 1 27 27 H 1.09003 * 109.47043 * 299.99645 * 12 11 2 28 28 H 1.09004 * 109.47415 * 59.99713 * 12 11 2 29 29 H 1.09003 * 109.46905 * 300.00027 * 13 12 11 30 30 H 1.09004 * 109.46757 * 59.99608 * 13 12 11 31 31 H 1.09003 * 109.47043 * 299.99943 * 14 13 12 32 32 H 1.09004 * 109.47415 * 60.00011 * 14 13 12 33 33 H 1.09003 * 113.61296 * 334.56307 * 18 15 14 34 34 H 1.08994 * 113.61774 * 105.46487 * 18 15 14 35 35 H 1.09004 * 113.60993 * 270.88175 * 19 18 15 36 36 H 1.08999 * 113.61748 * 139.97978 * 19 18 15 37 37 H 1.08996 * 113.61708 * 254.53476 * 20 15 14 38 38 H 1.09004 * 113.61141 * 25.42957 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1651 1.2231 -0.3661 5 6 1.5388 2.3401 0.4706 6 7 0.4120 2.2597 1.1458 7 14 2.3162 4.0073 0.1456 8 1 1.7992 4.5533 -1.1349 9 1 1.9762 4.9363 1.2531 10 1 3.7912 3.8575 0.0602 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7111 -1.4417 13 6 3.2178 -3.0359 -1.4411 14 6 3.4723 -3.4786 -2.8834 15 6 4.2371 -4.8037 -2.8829 16 6 3.6391 -5.8084 -1.9885 17 7 3.1773 -6.5835 -1.3019 18 6 5.7550 -4.6388 -2.6996 19 6 5.9231 -5.7503 -3.7490 20 6 4.5441 -5.3385 -4.2916 21 1 -0.3633 0.0918 1.0235 22 1 -0.3633 0.8406 -0.5913 23 1 -0.3633 -0.9322 -0.4323 24 1 -0.0147 3.0663 1.4749 25 1 1.6082 -2.0282 0.5148 26 1 3.1498 -1.1383 0.5144 27 1 1.5000 -1.8416 -1.9555 28 1 3.0416 -0.9518 -1.9559 29 1 4.1703 -2.9050 -0.9275 30 1 2.6290 -3.7955 -0.9268 31 1 2.5196 -3.6096 -3.3967 32 1 4.0609 -2.7191 -3.3981 33 1 6.1314 -3.6693 -3.0262 34 1 6.1079 -4.9184 -1.7070 35 1 5.9426 -6.7535 -3.3231 36 1 6.7394 -5.5705 -4.4486 37 1 3.9197 -6.1827 -4.5838 38 1 4.5892 -4.5604 -5.0537 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929490300.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:50 Heat of formation + Delta-G solvation = 49.791097 kcal Electronic energy + Delta-G solvation = -16303.901929 eV Core-core repulsion = 13761.295826 eV Total energy + Delta-G solvation = -2542.606103 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.10838 -36.12001 -35.91118 -33.97281 -31.25436 -29.03320 -26.15771 -25.88382 -25.44538 -23.06581 -21.63199 -20.75098 -20.07115 -16.76575 -16.54365 -15.63727 -15.10962 -14.84862 -14.67962 -14.12157 -13.52970 -13.40317 -13.04859 -12.90541 -12.73608 -12.49101 -12.27399 -11.83184 -11.59787 -11.49207 -11.10956 -10.93717 -10.84108 -10.76848 -10.62619 -10.42848 -10.31577 -10.21728 -10.00305 -9.74636 -9.67339 -8.47632 -6.64863 -5.65098 -3.11798 2.61147 2.70174 3.41477 3.47242 3.49012 3.68423 4.23179 4.27254 4.50978 4.55337 4.64306 5.04554 5.27636 5.34923 5.39216 5.42294 5.50936 5.58757 5.63426 5.65513 5.78174 5.82640 5.94381 6.00074 6.16851 6.26994 6.32028 6.54217 6.59134 6.83592 6.93466 7.09808 7.44882 7.48859 7.79734 7.86443 8.47786 9.31453 9.95931 10.45836 11.39695 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.038671 B = 0.004414 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.890507 B = 6342.137860 C = 6791.260723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.606 5.606 3 C -0.251 4.251 4 H 0.067 0.933 5 C -0.001 4.001 6 N -0.910 5.910 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.151 3.849 12 C -0.136 4.136 13 C -0.120 4.120 14 C -0.098 4.098 15 C 0.002 3.998 16 C 0.236 3.764 17 N -0.436 5.436 18 C -0.119 4.119 19 C -0.146 4.146 20 C -0.120 4.120 21 H 0.029 0.971 22 H 0.039 0.961 23 H -0.004 1.004 24 H 0.251 0.749 25 H 0.031 0.969 26 H 0.044 0.956 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.647 -13.042 -11.416 19.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.329 5.329 3 C -0.381 4.381 4 H 0.085 0.915 5 C -0.199 4.199 6 N -0.555 5.555 7 Si 0.734 3.266 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.024 3.976 12 C -0.176 4.176 13 C -0.159 4.159 14 C -0.136 4.136 15 C -0.002 4.002 16 C -0.081 4.081 17 N -0.110 5.110 18 C -0.157 4.157 19 C -0.184 4.184 20 C -0.159 4.159 21 H 0.047 0.953 22 H 0.058 0.942 23 H 0.015 0.985 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.817 -14.084 -10.262 19.530 hybrid contribution 0.391 1.256 -0.325 1.355 sum 9.208 -12.828 -10.588 19.011 Atomic orbital electron populations 1.20761 0.82857 0.95210 0.99305 1.43918 1.01800 1.00830 1.86335 1.19198 0.98207 0.85696 1.34992 0.91480 1.25031 0.97987 0.98500 0.98373 1.70075 1.19574 1.27031 1.38841 0.86263 0.78727 0.84276 0.77345 1.21569 1.21814 1.20504 1.20738 0.95818 0.88115 0.92954 1.22212 0.99246 0.94774 1.01383 1.21618 1.00781 0.98374 0.95102 1.21626 1.00248 0.92794 0.98965 1.19320 0.96098 0.91568 0.93198 1.28239 0.93232 0.93183 0.93490 1.81135 1.08975 1.11141 1.09754 1.23043 0.91821 1.00458 1.00393 1.22939 0.97689 0.98961 0.98792 1.23028 0.97024 1.01546 0.94272 0.95269 0.94241 0.98527 0.93855 0.95066 0.93756 0.92963 0.92066 0.91895 0.92862 0.91051 0.89712 0.87846 0.90727 0.90287 0.90480 0.90887 0.87963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.20 8.98 59.85 0.54 4.74 16 2 N -0.61 -15.80 2.92 -181.12 -0.53 -16.33 16 3 C -0.25 -7.05 9.65 -15.06 -0.15 -7.19 16 4 H 0.07 1.82 7.86 -52.49 -0.41 1.41 16 5 C 0.00 -0.03 5.10 -17.43 -0.09 -0.12 16 6 N -0.91 -27.26 10.71 55.49 0.59 -26.66 16 7 Si 0.90 22.09 29.57 -169.99 -5.03 17.06 16 8 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 9 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 C 0.15 3.20 5.64 -4.04 -0.02 3.18 16 12 C -0.14 -2.33 5.54 -26.73 -0.15 -2.47 16 13 C -0.12 -1.61 4.82 -26.73 -0.13 -1.74 16 14 C -0.10 -0.98 4.74 -26.73 -0.13 -1.11 16 15 C 0.00 0.01 0.95 -156.49 -0.15 -0.13 16 16 C 0.24 2.88 12.66 -20.83 -0.26 2.62 16 17 N -0.44 -6.49 18.52 42.07 0.78 -5.71 16 18 C -0.12 -0.87 7.20 -25.92 -0.19 -1.05 16 19 C -0.15 -0.92 7.79 -25.90 -0.20 -1.13 16 20 C -0.12 -0.80 7.21 -25.91 -0.19 -0.98 16 21 H 0.03 0.81 7.34 -51.93 -0.38 0.43 16 22 H 0.04 1.07 7.34 -51.92 -0.38 0.69 16 23 H 0.00 -0.09 8.03 -51.93 -0.42 -0.50 16 24 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 26 H 0.04 0.94 8.04 -51.93 -0.42 0.52 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.77 7.15 -51.93 -0.37 0.40 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.74 7.94 -51.93 -0.41 0.33 16 33 H 0.10 0.63 7.96 -51.93 -0.41 0.22 16 34 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 35 H 0.08 0.55 8.13 -51.93 -0.42 0.12 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 38 H 0.10 0.52 8.10 -51.93 -0.42 0.10 16 LS Contribution 314.51 15.07 4.74 4.74 Total: -1.00 -31.89 314.51 -7.11 -39.00 By element: Atomic # 1 Polarization: -0.16 SS G_CDS: -6.56 Total: -6.72 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -1.11 Total: -5.39 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.84 Total: -48.70 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.89 -7.11 -39.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929490300.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.792 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds