Wall clock time and date at job start Sun Mar 29 2020 22:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36936 * 120.00338 * 2 1 4 4 H 1.07996 * 119.99873 * 203.04231 * 3 2 1 5 5 C 1.38812 * 119.99865 * 23.04333 * 3 2 1 6 6 N 1.31616 * 119.99961 * 12.93452 * 5 3 2 7 7 Si 1.86800 * 119.99885 * 192.92332 * 5 3 2 8 8 H 1.48500 * 109.46626 * 90.00146 * 7 5 3 9 9 H 1.48498 * 109.47347 * 210.00225 * 7 5 3 10 10 H 1.48503 * 109.47251 * 330.00816 * 7 5 3 11 11 C 1.46501 * 119.99323 * 179.97438 * 2 1 3 12 12 C 1.52993 * 109.47222 * 90.00309 * 11 2 1 13 13 C 1.53002 * 109.47541 * 179.97438 * 12 11 2 14 14 C 1.52993 * 109.47541 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47541 * 180.02562 * 14 13 12 16 16 C 1.47205 * 112.84446 * 48.79948 * 15 14 13 17 17 N 6.92599 * 104.31272 * 191.18620 * 2 1 3 18 18 C 1.53776 * 113.61407 * 277.50150 * 15 14 13 19 19 C 1.53788 * 87.07986 * 220.01643 * 18 15 14 20 20 C 1.53774 * 113.61960 * 179.97438 * 15 14 13 21 21 H 1.08998 * 109.47046 * 275.12683 * 1 2 3 22 22 H 1.09007 * 109.46665 * 35.12297 * 1 2 3 23 23 H 1.08992 * 109.47268 * 155.11953 * 1 2 3 24 24 H 0.96998 * 119.99567 * 179.97438 * 6 5 3 25 25 H 1.09004 * 109.47160 * 329.99866 * 11 2 1 26 26 H 1.09003 * 109.46821 * 210.00090 * 11 2 1 27 27 H 1.09003 * 109.47043 * 299.99645 * 12 11 2 28 28 H 1.09004 * 109.47415 * 59.99713 * 12 11 2 29 29 H 1.09003 * 109.46905 * 300.00027 * 13 12 11 30 30 H 1.09004 * 109.46757 * 59.99608 * 13 12 11 31 31 H 1.09003 * 109.47043 * 299.99943 * 14 13 12 32 32 H 1.09004 * 109.47415 * 60.00011 * 14 13 12 33 33 H 1.09003 * 113.61296 * 334.56307 * 18 15 14 34 34 H 1.08994 * 113.61774 * 105.46487 * 18 15 14 35 35 H 1.09004 * 113.60993 * 270.88175 * 19 18 15 36 36 H 1.08999 * 113.61748 * 139.97978 * 19 18 15 37 37 H 1.08996 * 113.61708 * 254.53476 * 20 15 14 38 38 H 1.09004 * 113.61141 * 25.42957 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1651 1.2231 -0.3661 5 6 1.5388 2.3401 0.4706 6 7 0.4120 2.2597 1.1458 7 14 2.3162 4.0073 0.1456 8 1 1.7992 4.5533 -1.1349 9 1 1.9762 4.9363 1.2531 10 1 3.7912 3.8575 0.0602 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7111 -1.4417 13 6 3.2178 -3.0359 -1.4411 14 6 3.4723 -3.4786 -2.8834 15 6 4.2371 -4.8037 -2.8829 16 6 3.6391 -5.8084 -1.9885 17 7 3.1773 -6.5835 -1.3019 18 6 5.7550 -4.6388 -2.6996 19 6 5.9231 -5.7503 -3.7490 20 6 4.5441 -5.3385 -4.2916 21 1 -0.3633 0.0918 1.0235 22 1 -0.3633 0.8406 -0.5913 23 1 -0.3633 -0.9322 -0.4323 24 1 -0.0147 3.0663 1.4749 25 1 1.6082 -2.0282 0.5148 26 1 3.1498 -1.1383 0.5144 27 1 1.5000 -1.8416 -1.9555 28 1 3.0416 -0.9518 -1.9559 29 1 4.1703 -2.9050 -0.9275 30 1 2.6290 -3.7955 -0.9268 31 1 2.5196 -3.6096 -3.3967 32 1 4.0609 -2.7191 -3.3981 33 1 6.1314 -3.6693 -3.0262 34 1 6.1079 -4.9184 -1.7070 35 1 5.9426 -6.7535 -3.3231 36 1 6.7394 -5.5705 -4.4486 37 1 3.9197 -6.1827 -4.5838 38 1 4.5892 -4.5604 -5.0537 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929490300.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:49 Heat of formation + Delta-G solvation = 32.436602 kcal Electronic energy + Delta-G solvation = -16304.654476 eV Core-core repulsion = 13761.295826 eV Total energy + Delta-G solvation = -2543.358650 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.78800 -37.89768 -36.88936 -35.40752 -33.10449 -30.39512 -27.93896 -26.96809 -26.51521 -24.42424 -22.72000 -21.93888 -21.41084 -18.69851 -17.39651 -16.86659 -16.39665 -16.21144 -15.52029 -15.45220 -15.07420 -14.90499 -14.55262 -13.93893 -13.86282 -13.71044 -13.15501 -13.12313 -13.04160 -12.73581 -12.66634 -12.42455 -12.36646 -12.09407 -11.92139 -11.82086 -11.78821 -11.60903 -11.30341 -11.05802 -10.97071 -10.58279 -8.74396 -7.79878 -5.30044 1.48562 1.50158 1.59149 1.70404 1.76423 2.53585 2.89209 3.32786 3.55862 3.65609 3.72845 3.96743 3.99450 4.18089 4.32212 4.48826 4.58863 4.73430 4.81416 4.89623 4.92160 4.96590 4.97852 5.05244 5.06602 5.17131 5.18158 5.24398 5.27305 5.40708 5.51085 5.51835 5.62770 5.66319 5.68813 6.35426 6.56837 7.17083 7.89627 8.35153 9.23688 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.038671 B = 0.004414 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.890507 B = 6342.137860 C = 6791.260723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.625 5.625 3 C -0.260 4.260 4 H 0.075 0.925 5 C -0.059 4.059 6 N -0.945 5.945 7 Si 0.972 3.028 8 H -0.285 1.285 9 H -0.297 1.297 10 H -0.264 1.264 11 C 0.145 3.855 12 C -0.119 4.119 13 C -0.112 4.112 14 C -0.091 4.091 15 C -0.007 4.007 16 C 0.255 3.745 17 N -0.493 5.493 18 C -0.116 4.116 19 C -0.142 4.142 20 C -0.110 4.110 21 H 0.000 1.000 22 H 0.016 0.984 23 H 0.026 0.974 24 H 0.247 0.753 25 H 0.031 0.969 26 H 0.041 0.959 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.124 0.876 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.614 -12.942 -13.529 22.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.348 5.348 3 C -0.390 4.390 4 H 0.093 0.907 5 C -0.254 4.254 6 N -0.592 5.592 7 Si 0.800 3.200 8 H -0.212 1.212 9 H -0.224 1.224 10 H -0.189 1.189 11 C 0.019 3.981 12 C -0.159 4.159 13 C -0.151 4.151 14 C -0.129 4.129 15 C -0.010 4.010 16 C -0.062 4.062 17 N -0.169 5.169 18 C -0.154 4.154 19 C -0.180 4.180 20 C -0.149 4.149 21 H 0.019 0.981 22 H 0.035 0.965 23 H 0.045 0.955 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.127 0.873 33 H 0.142 0.858 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.813 -14.023 -12.394 21.615 hybrid contribution -0.213 1.170 0.361 1.242 sum 10.600 -12.854 -12.034 20.552 Atomic orbital electron populations 1.20495 0.83225 0.95666 0.97360 1.44221 1.02012 1.02042 1.86572 1.19580 0.98583 0.86646 1.34184 0.90736 1.25879 0.98731 1.02202 0.98555 1.70257 1.21165 1.27569 1.40255 0.85184 0.78592 0.79437 0.76774 1.21152 1.22413 1.18859 1.20968 0.95059 0.86280 0.95763 1.21945 0.99556 0.96547 0.97843 1.21522 1.00128 0.95723 0.97709 1.21588 1.01073 0.93798 0.96484 1.19598 0.96828 0.90219 0.94395 1.28954 0.91924 0.92664 0.92656 1.81142 1.10889 1.13103 1.11721 1.23136 0.89994 1.01904 1.00414 1.22917 0.98290 0.98051 0.98711 1.23089 0.96757 1.02027 0.92985 0.98130 0.96550 0.95515 0.94395 0.95008 0.94051 0.93459 0.92267 0.91227 0.94421 0.90939 0.87321 0.85804 0.91690 0.91397 0.88439 0.91181 0.85507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.26 8.98 127.77 1.15 10.41 16 2 N -0.62 -32.56 2.92 -726.93 -2.12 -34.69 16 3 C -0.26 -14.49 9.65 84.03 0.81 -13.68 16 4 H 0.07 3.96 7.86 -2.91 -0.02 3.94 16 5 C -0.06 -3.39 5.10 84.86 0.43 -2.95 16 6 N -0.95 -57.66 10.71 21.65 0.23 -57.43 16 7 Si 0.97 45.29 29.57 68.60 2.03 47.32 16 8 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 9 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 10 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 11 C 0.14 6.06 5.64 86.38 0.49 6.54 16 12 C -0.12 -3.88 5.54 30.59 0.17 -3.71 16 13 C -0.11 -2.79 4.82 30.59 0.15 -2.64 16 14 C -0.09 -1.55 4.74 30.59 0.14 -1.41 16 15 C -0.01 -0.10 0.95 -53.46 -0.05 -0.16 16 16 C 0.25 5.98 12.66 89.47 1.13 7.11 16 17 N -0.49 -14.77 18.52 19.98 0.37 -14.40 16 18 C -0.12 -1.33 7.20 31.12 0.22 -1.11 16 19 C -0.14 -1.35 7.79 31.13 0.24 -1.11 16 20 C -0.11 -1.08 7.21 31.13 0.22 -0.86 16 21 H 0.00 0.02 7.34 -2.39 -0.02 0.01 16 22 H 0.02 0.89 7.34 -2.38 -0.02 0.87 16 23 H 0.03 1.19 8.03 -2.39 -0.02 1.17 16 24 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 25 H 0.03 1.30 8.07 -2.38 -0.02 1.28 16 26 H 0.04 1.73 8.04 -2.39 -0.02 1.71 16 27 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.04 1.05 7.15 -2.38 -0.02 1.04 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.11 1.40 7.94 -2.38 -0.02 1.38 16 33 H 0.12 0.96 7.96 -2.39 -0.02 0.94 16 34 H 0.06 0.89 8.09 -2.39 -0.02 0.87 16 35 H 0.07 0.81 8.13 -2.39 -0.02 0.79 16 36 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.07 0.76 8.08 -2.39 -0.02 0.74 16 38 H 0.13 0.69 8.10 -2.38 -0.02 0.67 16 Total: -1.00 -69.65 314.51 6.63 -63.03 By element: Atomic # 1 Polarization: -1.27 SS G_CDS: 1.01 Total: -0.27 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 5.11 Total: -3.55 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -1.52 Total: -106.52 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -69.65 6.63 -63.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929490300.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.466 kcal (2) G-P(sol) polarization free energy of solvation -69.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds