Wall clock time and date at job start Sun Mar 29 2020 21:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53784 * 113.61374 * 2 1 4 4 C 1.54052 * 86.98160 * 270.83767 * 3 2 1 5 5 C 1.52999 * 113.69455 * 220.01092 * 4 3 2 6 6 N 1.46900 * 109.47302 * 272.53654 * 5 4 3 7 7 C 1.46899 * 111.00214 * 190.00046 * 6 5 4 8 8 C 1.50692 * 109.47280 * 170.12505 * 7 6 5 9 9 H 1.07999 * 120.00008 * 356.35344 * 8 7 6 10 10 C 1.37881 * 119.99972 * 176.35004 * 8 7 6 11 11 N 1.31509 * 120.00201 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 119.99918 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46817 * 90.00043 * 12 10 8 14 14 H 1.48499 * 109.46780 * 209.99910 * 12 10 8 15 15 H 1.48502 * 109.47155 * 330.00339 * 12 10 8 16 16 C 1.46894 * 111.00179 * 66.04366 * 6 5 4 17 17 C 1.52999 * 109.47148 * 63.68964 * 16 6 5 18 18 C 1.47201 * 109.47476 * 181.95374 * 17 16 6 19 19 N 6.12020 * 116.72734 * 20.50118 * 2 1 3 20 20 C 1.53772 * 113.61587 * 262.39086 * 2 1 3 21 21 H 1.09000 * 109.47309 * 159.13799 * 1 2 3 22 22 H 1.08997 * 109.47190 * 39.13477 * 1 2 3 23 23 H 1.09008 * 109.46985 * 279.13845 * 1 2 3 24 24 H 1.09007 * 112.84568 * 131.19018 * 2 1 3 25 25 H 1.08995 * 113.61493 * 25.43078 * 3 2 1 26 26 H 1.08997 * 113.61084 * 156.33468 * 3 2 1 27 27 H 1.08996 * 113.61341 * 89.11653 * 4 3 2 28 28 H 1.09001 * 109.47114 * 32.53190 * 5 4 3 29 29 H 1.08997 * 109.47148 * 152.53129 * 5 4 3 30 30 H 1.09005 * 109.46852 * 290.12762 * 7 6 5 31 31 H 1.09004 * 109.47199 * 50.12187 * 7 6 5 32 32 H 0.96998 * 120.00425 * 179.97438 * 11 10 8 33 33 H 1.08997 * 109.47326 * 183.69269 * 16 6 5 34 34 H 1.09000 * 109.47185 * 303.69337 * 16 6 5 35 35 H 1.09003 * 109.47301 * 301.95193 * 17 16 6 36 36 H 1.08999 * 109.47396 * 61.95409 * 17 16 6 37 37 H 1.08998 * 113.62005 * 203.66738 * 20 2 1 38 38 H 1.09006 * 113.61470 * 334.48628 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4091 0.0000 4 6 2.0929 1.3438 -1.5382 5 6 3.3255 1.9391 -2.2218 6 7 3.1282 3.3816 -2.4171 7 6 4.1779 3.9449 -3.2767 8 6 3.8150 5.3584 -3.6521 9 1 2.8694 5.7748 -3.3377 10 6 4.6901 6.1202 -4.3970 11 7 5.8418 5.6134 -4.7794 12 14 4.2399 7.8723 -4.8630 13 1 4.7170 8.8030 -3.8088 14 1 4.8799 8.2203 -6.1571 15 1 2.7650 7.9864 -4.9936 16 6 3.0698 4.0843 -1.1285 17 6 4.4130 3.9435 -0.4095 18 6 4.3394 4.6076 0.9022 19 7 4.2825 5.1201 1.9144 20 6 2.1460 -0.1866 -1.3965 21 1 -0.3634 -0.9603 -0.3660 22 1 -0.3633 0.7971 -0.6486 23 1 -0.3633 0.1632 1.0147 24 1 1.9532 -0.6616 0.7560 25 1 1.4945 2.1704 0.4289 26 1 3.1590 1.4427 0.4009 27 1 1.1569 1.7111 -1.9588 28 1 4.2030 1.7738 -1.5967 29 1 3.4724 1.4582 -3.1889 30 1 5.1266 3.9437 -2.7399 31 1 4.2707 3.3415 -4.1797 32 1 6.4574 6.1492 -5.3038 33 1 2.8580 5.1397 -1.2993 34 1 2.2813 3.6504 -0.5135 35 1 4.6412 2.8869 -0.2694 36 1 5.1962 4.4081 -1.0084 37 1 3.1590 -0.5884 -1.3769 38 1 1.4951 -0.7138 -2.0941 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930107399.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:27 Heat of formation + Delta-G solvation = 37.527457 kcal Electronic energy + Delta-G solvation = -16965.259984 eV Core-core repulsion = 14422.122090 eV Total energy + Delta-G solvation = -2543.137894 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.59445 -37.22106 -35.79521 -32.66766 -30.77832 -29.69388 -27.26355 -25.76100 -25.13601 -23.73738 -21.72206 -19.64791 -18.48357 -17.34882 -16.35009 -15.45320 -15.28536 -14.80148 -14.48890 -13.99075 -13.79334 -13.40460 -13.35739 -12.55957 -12.50515 -12.19535 -11.98666 -11.96765 -11.77996 -11.59103 -11.43725 -11.10668 -10.86726 -10.65376 -10.60664 -10.39373 -10.24835 -10.02875 -9.89750 -9.55848 -9.16885 -8.47665 -7.31982 -6.07179 -4.08511 3.11402 3.14156 3.30365 3.37439 3.41197 4.33996 4.42519 4.63853 4.69321 4.85487 4.89592 5.16177 5.29080 5.42548 5.47896 5.58135 5.68355 5.73210 5.77015 5.82081 5.88546 5.94936 5.97108 6.07686 6.12424 6.25311 6.28722 6.39908 6.49480 6.67346 6.75262 7.22758 7.26174 7.76352 7.89301 8.03646 8.11058 8.48081 8.99785 9.56709 11.03185 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.024184 B = 0.006580 C = 0.005704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.534094 B = 4254.332707 C = 4907.748244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 C -0.136 4.136 4 C -0.099 4.099 5 C 0.057 3.943 6 N -0.526 5.526 7 C 0.185 3.815 8 C -0.509 4.509 9 H 0.064 0.936 10 C 0.058 3.942 11 N -0.898 5.898 12 Si 0.893 3.107 13 H -0.282 1.282 14 H -0.287 1.287 15 H -0.273 1.273 16 C 0.070 3.930 17 C -0.075 4.075 18 C 0.225 3.775 19 N -0.464 5.464 20 C -0.133 4.133 21 H 0.054 0.946 22 H 0.059 0.941 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.029 0.971 29 H 0.070 0.930 30 H 0.002 0.998 31 H 0.029 0.971 32 H 0.261 0.739 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.121 0.879 37 H 0.077 0.923 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.106 -10.720 6.432 13.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.136 4.136 3 C -0.173 4.173 4 C -0.118 4.118 5 C -0.072 4.072 6 N -0.249 5.249 7 C 0.060 3.940 8 C -0.547 4.547 9 H 0.082 0.918 10 C -0.144 4.144 11 N -0.537 5.537 12 Si 0.721 3.279 13 H -0.208 1.208 14 H -0.213 1.213 15 H -0.197 1.197 16 C -0.060 4.060 17 C -0.116 4.116 18 C -0.092 4.092 19 N -0.142 5.142 20 C -0.171 4.171 21 H 0.073 0.927 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.114 0.886 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.020 0.980 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.139 0.861 37 H 0.096 0.904 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.483 -9.842 7.565 14.004 hybrid contribution 0.838 0.668 -0.365 1.132 sum -5.645 -9.174 7.201 12.956 Atomic orbital electron populations 1.21582 0.94200 1.01761 1.01555 1.22291 0.95638 0.97941 0.97766 1.23214 1.00697 0.96299 0.97118 1.22603 1.00003 0.94457 0.94691 1.22141 0.94963 0.90377 0.99676 1.62380 1.49999 1.00780 1.11692 1.19854 0.87512 0.95216 0.91416 1.21151 1.03367 0.97073 1.33147 0.91800 1.24955 0.94960 0.98446 0.96028 1.69936 1.08882 1.37024 1.37877 0.86565 0.78731 0.84722 0.77841 1.20770 1.21295 1.19750 1.22130 0.92415 1.01614 0.89860 1.20277 1.05255 1.00000 0.86112 1.29344 0.92352 0.93040 0.94483 1.81133 1.09861 1.10320 1.12861 1.22998 1.00758 0.96852 0.96517 0.92737 0.92183 0.92853 0.91338 0.91553 0.90536 0.88551 0.95278 0.91131 0.98020 0.95252 0.92899 0.89467 0.91296 0.88347 0.86099 0.90406 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 9.59 37.16 0.36 -0.91 16 2 C -0.12 -1.21 4.54 -89.81 -0.41 -1.62 16 3 C -0.14 -1.57 5.52 -25.77 -0.14 -1.71 16 4 C -0.10 -1.25 3.10 -89.67 -0.28 -1.53 16 5 C 0.06 0.86 4.69 -3.82 -0.02 0.84 16 6 N -0.53 -9.76 4.70 -236.08 -1.11 -10.87 16 7 C 0.18 4.27 4.48 -4.98 -0.02 4.24 16 8 C -0.51 -13.21 8.44 -34.44 -0.29 -13.50 16 9 H 0.06 1.66 7.24 -52.49 -0.38 1.28 16 10 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 11 N -0.90 -25.28 13.29 55.43 0.74 -24.54 16 12 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 15 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 16 C 0.07 1.17 4.64 -3.83 -0.02 1.15 16 17 C -0.07 -1.14 5.03 -29.52 -0.15 -1.29 16 18 C 0.23 3.69 15.43 -20.76 -0.32 3.37 16 19 N -0.46 -8.48 18.54 42.15 0.78 -7.70 16 20 C -0.13 -1.44 7.23 -25.92 -0.19 -1.62 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 22 H 0.06 0.60 7.33 -51.93 -0.38 0.22 16 23 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.79 7.21 -51.93 -0.37 0.42 16 26 H 0.08 0.88 7.06 -51.93 -0.37 0.51 16 27 H 0.10 1.32 7.64 -51.93 -0.40 0.92 16 28 H 0.03 0.42 5.80 -51.93 -0.30 0.12 16 29 H 0.07 1.12 7.93 -51.93 -0.41 0.71 16 30 H 0.00 0.05 6.05 -51.93 -0.31 -0.26 16 31 H 0.03 0.74 7.93 -51.93 -0.41 0.33 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.09 1.64 6.92 -51.93 -0.36 1.28 16 34 H 0.07 1.02 5.12 -51.93 -0.27 0.76 16 35 H 0.10 1.30 5.43 -51.93 -0.28 1.02 16 36 H 0.12 2.10 6.39 -51.93 -0.33 1.77 16 37 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 38 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 302.51 15.07 4.56 4.56 Total: -1.00 -27.99 302.51 -7.45 -35.44 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -5.82 Total: -1.69 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -1.57 Total: -11.12 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.41 Total: -43.11 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.99 -7.45 -35.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930107399.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.964 kcal (2) G-P(sol) polarization free energy of solvation -27.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds