Wall clock time and date at job start Sun Mar 29 2020 21:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53784 * 113.61374 * 2 1 4 4 C 1.54052 * 86.98160 * 270.83767 * 3 2 1 5 5 C 1.52999 * 113.69455 * 220.01092 * 4 3 2 6 6 N 1.46900 * 109.47302 * 272.53654 * 5 4 3 7 7 C 1.46899 * 111.00214 * 190.00046 * 6 5 4 8 8 C 1.50692 * 109.47280 * 170.12505 * 7 6 5 9 9 H 1.07999 * 120.00008 * 356.35344 * 8 7 6 10 10 C 1.37881 * 119.99972 * 176.35004 * 8 7 6 11 11 N 1.31509 * 120.00201 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 119.99918 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46817 * 90.00043 * 12 10 8 14 14 H 1.48499 * 109.46780 * 209.99910 * 12 10 8 15 15 H 1.48502 * 109.47155 * 330.00339 * 12 10 8 16 16 C 1.46894 * 111.00179 * 66.04366 * 6 5 4 17 17 C 1.52999 * 109.47148 * 63.68964 * 16 6 5 18 18 C 1.47201 * 109.47476 * 181.95374 * 17 16 6 19 19 N 6.12020 * 116.72734 * 20.50118 * 2 1 3 20 20 C 1.53772 * 113.61587 * 262.39086 * 2 1 3 21 21 H 1.09000 * 109.47309 * 159.13799 * 1 2 3 22 22 H 1.08997 * 109.47190 * 39.13477 * 1 2 3 23 23 H 1.09008 * 109.46985 * 279.13845 * 1 2 3 24 24 H 1.09007 * 112.84568 * 131.19018 * 2 1 3 25 25 H 1.08995 * 113.61493 * 25.43078 * 3 2 1 26 26 H 1.08997 * 113.61084 * 156.33468 * 3 2 1 27 27 H 1.08996 * 113.61341 * 89.11653 * 4 3 2 28 28 H 1.09001 * 109.47114 * 32.53190 * 5 4 3 29 29 H 1.08997 * 109.47148 * 152.53129 * 5 4 3 30 30 H 1.09005 * 109.46852 * 290.12762 * 7 6 5 31 31 H 1.09004 * 109.47199 * 50.12187 * 7 6 5 32 32 H 0.96998 * 120.00425 * 179.97438 * 11 10 8 33 33 H 1.08997 * 109.47326 * 183.69269 * 16 6 5 34 34 H 1.09000 * 109.47185 * 303.69337 * 16 6 5 35 35 H 1.09003 * 109.47301 * 301.95193 * 17 16 6 36 36 H 1.08999 * 109.47396 * 61.95409 * 17 16 6 37 37 H 1.08998 * 113.62005 * 203.66738 * 20 2 1 38 38 H 1.09006 * 113.61470 * 334.48628 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4091 0.0000 4 6 2.0929 1.3438 -1.5382 5 6 3.3255 1.9391 -2.2218 6 7 3.1282 3.3816 -2.4171 7 6 4.1779 3.9449 -3.2767 8 6 3.8150 5.3584 -3.6521 9 1 2.8694 5.7748 -3.3377 10 6 4.6901 6.1202 -4.3970 11 7 5.8418 5.6134 -4.7794 12 14 4.2399 7.8723 -4.8630 13 1 4.7170 8.8030 -3.8088 14 1 4.8799 8.2203 -6.1571 15 1 2.7650 7.9864 -4.9936 16 6 3.0698 4.0843 -1.1285 17 6 4.4130 3.9435 -0.4095 18 6 4.3394 4.6076 0.9022 19 7 4.2825 5.1201 1.9144 20 6 2.1460 -0.1866 -1.3965 21 1 -0.3634 -0.9603 -0.3660 22 1 -0.3633 0.7971 -0.6486 23 1 -0.3633 0.1632 1.0147 24 1 1.9532 -0.6616 0.7560 25 1 1.4945 2.1704 0.4289 26 1 3.1590 1.4427 0.4009 27 1 1.1569 1.7111 -1.9588 28 1 4.2030 1.7738 -1.5967 29 1 3.4724 1.4582 -3.1889 30 1 5.1266 3.9437 -2.7399 31 1 4.2707 3.3415 -4.1797 32 1 6.4574 6.1492 -5.3038 33 1 2.8580 5.1397 -1.2993 34 1 2.2813 3.6504 -0.5135 35 1 4.6412 2.8869 -0.2694 36 1 5.1962 4.4081 -1.0084 37 1 3.1590 -0.5884 -1.3769 38 1 1.4951 -0.7138 -2.0941 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930107399.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:26 Heat of formation + Delta-G solvation = 21.952553 kcal Electronic energy + Delta-G solvation = -16965.935363 eV Core-core repulsion = 14422.122090 eV Total energy + Delta-G solvation = -2543.813272 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.65492 -38.54012 -37.22893 -34.64894 -32.04049 -30.97263 -28.77028 -26.84895 -26.29681 -25.31501 -23.03206 -21.06487 -19.41312 -18.72298 -18.24044 -16.91088 -16.58888 -16.12023 -15.84171 -15.36627 -15.12649 -14.71096 -14.32502 -14.28306 -13.66574 -13.52260 -13.30944 -13.15246 -12.99862 -12.85958 -12.73204 -12.66643 -12.58371 -12.30581 -11.96346 -11.69308 -11.54204 -11.33955 -11.12383 -10.84418 -10.57042 -10.49856 -8.85330 -8.12826 -6.19756 1.43801 1.45816 1.55368 1.75823 1.78886 2.45083 3.00914 3.21324 3.46457 3.80222 3.86048 3.97461 4.07027 4.19360 4.29148 4.52952 4.59705 4.71949 4.74626 4.85956 4.91406 4.96786 5.02098 5.09910 5.11678 5.17927 5.19395 5.33604 5.41993 5.43842 5.46837 5.61571 5.74697 5.80257 6.17714 6.41259 6.58642 6.77189 6.97623 7.49544 8.96894 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.024184 B = 0.006580 C = 0.005704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.534094 B = 4254.332707 C = 4907.748244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 C -0.137 4.137 4 C -0.100 4.100 5 C 0.058 3.942 6 N -0.534 5.534 7 C 0.198 3.802 8 C -0.516 4.516 9 H 0.060 0.940 10 C 0.009 3.991 11 N -0.930 5.930 12 Si 0.952 3.048 13 H -0.278 1.278 14 H -0.286 1.286 15 H -0.268 1.268 16 C 0.075 3.925 17 C -0.061 4.061 18 C 0.245 3.755 19 N -0.491 5.491 20 C -0.127 4.127 21 H 0.063 0.937 22 H 0.051 0.949 23 H 0.059 0.941 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.042 0.958 29 H 0.059 0.941 30 H -0.007 1.007 31 H 0.002 0.998 32 H 0.262 0.738 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.127 0.873 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.868 -11.520 7.387 15.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.129 4.129 3 C -0.174 4.174 4 C -0.118 4.118 5 C -0.070 4.070 6 N -0.256 5.256 7 C 0.072 3.928 8 C -0.554 4.554 9 H 0.078 0.922 10 C -0.189 4.189 11 N -0.571 5.571 12 Si 0.778 3.222 13 H -0.204 1.204 14 H -0.212 1.212 15 H -0.192 1.192 16 C -0.055 4.055 17 C -0.103 4.103 18 C -0.072 4.072 19 N -0.170 5.170 20 C -0.165 4.165 21 H 0.082 0.918 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.011 0.989 31 H 0.020 0.980 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.144 0.856 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.263 -10.651 8.533 15.460 hybrid contribution 1.045 0.869 -0.664 1.513 sum -6.218 -9.782 7.868 14.009 Atomic orbital electron populations 1.21595 0.93672 1.02026 1.01854 1.22265 0.96045 0.97016 0.97560 1.23232 1.01096 0.97276 0.95778 1.22539 0.98057 0.95957 0.95281 1.22218 0.96927 0.88034 0.99832 1.62252 1.48275 1.02753 1.12363 1.19511 0.88382 0.93723 0.91157 1.21481 1.02968 0.98459 1.32532 0.92209 1.25681 0.94990 1.02001 0.96250 1.70038 1.09827 1.38365 1.38850 0.85646 0.78562 0.80546 0.77460 1.20425 1.21150 1.19238 1.22064 0.93841 1.00235 0.89400 1.20164 1.03762 1.01343 0.85046 1.29342 0.91460 0.92230 0.94162 1.81158 1.10739 1.11231 1.13878 1.22988 1.01431 0.95038 0.97044 0.91758 0.93035 0.92211 0.90197 0.91879 0.90071 0.89619 0.93996 0.92196 0.98932 0.97966 0.92934 0.91874 0.88937 0.85575 0.87962 0.89721 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 9.59 71.98 0.69 -1.51 16 2 C -0.11 -1.95 4.54 -10.27 -0.05 -1.99 16 3 C -0.14 -2.80 5.52 31.21 0.17 -2.63 16 4 C -0.10 -2.34 3.10 -10.18 -0.03 -2.37 16 5 C 0.06 1.68 4.69 86.30 0.40 2.09 16 6 N -0.53 -19.63 4.70 -900.83 -4.24 -23.87 16 7 C 0.20 9.29 4.48 85.55 0.38 9.67 16 8 C -0.52 -27.05 8.44 25.60 0.22 -26.83 16 9 H 0.06 3.12 7.24 -2.91 -0.02 3.10 16 10 C 0.01 0.49 5.46 84.66 0.46 0.95 16 11 N -0.93 -53.02 13.29 21.45 0.28 -52.73 16 12 Si 0.95 43.08 29.54 68.60 2.03 45.10 16 13 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 14 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 16 C 0.07 2.42 4.64 86.30 0.40 2.82 16 17 C -0.06 -1.81 5.03 28.79 0.14 -1.66 16 18 C 0.24 7.69 15.43 89.44 1.38 9.07 16 19 N -0.49 -17.38 18.54 20.01 0.37 -17.01 16 20 C -0.13 -2.42 7.23 31.12 0.23 -2.19 16 21 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.05 0.93 7.33 -2.39 -0.02 0.91 16 23 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 24 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.06 1.35 7.21 -2.39 -0.02 1.33 16 26 H 0.08 1.60 7.06 -2.39 -0.02 1.59 16 27 H 0.09 2.23 7.64 -2.39 -0.02 2.21 16 28 H 0.04 1.12 5.80 -2.39 -0.01 1.11 16 29 H 0.06 1.87 7.93 -2.39 -0.02 1.86 16 30 H -0.01 -0.34 6.05 -2.38 -0.01 -0.35 16 31 H 0.00 0.12 7.93 -2.38 -0.02 0.10 16 32 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 33 H 0.06 2.36 6.92 -2.39 -0.02 2.35 16 34 H 0.09 2.58 5.12 -2.39 -0.01 2.57 16 35 H 0.13 3.02 5.43 -2.39 -0.01 3.01 16 36 H 0.10 3.52 6.39 -2.39 -0.02 3.50 16 37 H 0.08 1.52 8.10 -2.39 -0.02 1.50 16 38 H 0.07 1.27 8.10 -2.38 -0.02 1.25 16 Total: -1.00 -59.28 302.51 3.89 -55.40 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 1.04 Total: 7.70 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 4.40 Total: -14.59 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -3.58 Total: -93.61 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -59.28 3.89 -55.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930107399.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.348 kcal (2) G-P(sol) polarization free energy of solvation -59.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds