Wall clock time and date at job start Sun Mar 29 2020 22:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31386 * 1 3 3 Si 1.86797 * 120.00310 * 2 1 4 4 H 1.48502 * 109.47080 * 270.00128 * 3 2 1 5 5 H 1.48505 * 109.47081 * 30.00024 * 3 2 1 6 6 H 1.48495 * 109.46973 * 149.99685 * 3 2 1 7 7 C 1.39031 * 119.99521 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99832 * 0.02562 * 7 2 1 9 9 N 1.36848 * 119.99548 * 180.02562 * 7 2 1 10 10 C 1.34779 * 119.99628 * 180.02562 * 9 7 2 11 11 O 1.21745 * 119.99962 * 0.02562 * 10 9 7 12 12 C 1.46519 * 119.99907 * 179.97438 * 10 9 7 13 13 O 1.35394 * 126.12365 * 0.02950 * 12 10 9 14 14 C 1.34431 * 109.47040 * 179.97438 * 13 12 10 15 15 C 1.33932 * 108.57358 * 359.95872 * 14 13 12 16 16 C 1.35310 * 126.12685 * 179.97438 * 12 10 9 17 17 C 1.50492 * 130.60407 * 0.31184 * 16 12 10 18 18 C 1.53679 * 107.55899 * 164.09789 * 17 16 12 19 19 O 1.42904 * 109.89275 * 48.26194 * 18 17 16 20 20 C 1.43516 * 114.75979 * 287.68707 * 19 18 17 21 21 H 0.97006 * 119.99971 * 0.02562 * 1 2 3 22 22 H 0.97000 * 119.99903 * 359.97438 * 9 7 2 23 23 H 1.08005 * 125.71686 * 179.97438 * 14 13 12 24 24 H 1.08995 * 109.74661 * 44.60937 * 17 16 12 25 25 H 1.09004 * 109.86302 * 283.64952 * 17 16 12 26 26 H 1.09002 * 109.38705 * 288.15683 * 18 17 16 27 27 H 1.08996 * 109.38325 * 168.36370 * 18 17 16 28 28 H 1.09010 * 109.81916 * 171.03620 * 20 19 18 29 29 H 1.08995 * 109.82365 * 291.89402 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.4954 2.0463 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5454 1.4400 0.7001 7 6 2.0089 -1.2041 0.0005 8 1 1.4688 -2.1393 0.0005 9 7 3.3774 -1.2041 0.0011 10 6 4.0512 -2.3714 0.0011 11 8 3.4424 -3.4257 0.0001 12 6 5.5164 -2.3715 0.0011 13 8 6.3146 -1.2779 0.0016 14 6 7.6026 -1.6632 0.0020 15 6 7.6474 -3.0017 0.0026 16 6 6.3141 -3.4644 0.0016 17 6 5.9686 -4.9291 -0.0040 18 6 7.2354 -5.7028 -0.4020 19 8 8.3481 -5.2426 0.3675 20 6 8.8284 -3.9385 0.0093 21 1 -0.4850 0.8401 -0.0004 22 1 3.8624 -0.3641 0.0007 23 1 8.4580 -1.0038 0.0021 24 1 5.1764 -5.1179 -0.7284 25 1 5.6437 -5.2368 0.9900 26 1 7.4380 -5.5448 -1.4613 27 1 7.0829 -6.7661 -0.2174 28 1 9.5642 -3.6020 0.7399 29 1 9.2802 -3.9704 -0.9821 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117110324.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:04 Heat of formation + Delta-G solvation = -64.488709 kcal Electronic energy + Delta-G solvation = -16562.143701 eV Core-core repulsion = 13645.197203 eV Total energy + Delta-G solvation = -2916.946498 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.42732 -38.42964 -38.17684 -34.35871 -33.20177 -31.93048 -31.74029 -28.98555 -26.11552 -25.40047 -23.27463 -21.94150 -19.46997 -19.39295 -18.64420 -17.13133 -16.20521 -15.93453 -15.65221 -15.09179 -15.02762 -14.70115 -13.71652 -13.49033 -13.27335 -13.17403 -12.83430 -12.47738 -12.28571 -11.90121 -11.36284 -11.31695 -10.78578 -10.69600 -10.15552 -9.78804 -9.77037 -9.18020 -8.91420 -8.41010 -8.20855 -6.53239 -3.98005 1.58331 2.51675 2.99308 3.01899 3.07174 3.18985 3.81131 3.95828 4.01399 4.45265 4.68145 4.96073 5.10182 5.13126 5.26342 5.30679 5.36841 5.46394 5.67818 5.94083 6.05899 6.16272 6.31194 6.35416 6.68916 7.08580 7.19327 7.41757 7.92901 8.39386 8.71830 9.20144 9.59772 10.57641 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.044454 B = 0.006744 C = 0.005905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.716500 B = 4151.036071 C = 4740.301922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.047 3.953 3 Si 0.878 3.122 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.264 1.264 7 C -0.303 4.303 8 H 0.126 0.874 9 N -0.558 5.558 10 C 0.509 3.491 11 O -0.559 6.559 12 C -0.018 4.018 13 O -0.176 6.176 14 C -0.019 4.019 15 C -0.233 4.233 16 C -0.125 4.125 17 C -0.078 4.078 18 C 0.064 3.936 19 O -0.383 6.383 20 C 0.139 3.861 21 H 0.279 0.721 22 H 0.377 0.623 23 H 0.203 0.797 24 H 0.096 0.904 25 H 0.084 0.916 26 H 0.051 0.949 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.425 -2.621 -1.141 16.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.159 4.159 3 Si 0.703 3.297 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.190 1.190 7 C -0.432 4.432 8 H 0.144 0.856 9 N -0.193 5.193 10 C 0.296 3.704 11 O -0.444 6.444 12 C -0.070 4.070 13 O -0.072 6.072 14 C -0.088 4.088 15 C -0.235 4.235 16 C -0.128 4.128 17 C -0.115 4.115 18 C -0.013 4.013 19 O -0.301 6.301 20 C 0.062 3.938 21 H 0.089 0.911 22 H 0.211 0.789 23 H 0.219 0.781 24 H 0.114 0.886 25 H 0.103 0.897 26 H 0.069 0.931 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.723 -3.000 -0.997 16.038 hybrid contribution 0.553 1.623 -0.179 1.724 sum 16.276 -1.377 -1.176 16.376 Atomic orbital electron populations 1.69608 1.05790 1.28240 1.46200 1.25132 0.95593 0.98392 0.96771 0.86659 0.80131 0.83426 0.79444 1.19108 1.19641 1.18960 1.19549 0.78927 0.97103 1.47620 0.85595 1.42202 1.07843 1.06384 1.62900 1.15959 0.81875 0.85149 0.87384 1.90728 1.65772 1.30630 1.57292 1.22246 0.92225 0.83951 1.08602 1.84338 1.16195 1.34688 1.72018 1.23360 0.84990 0.94726 1.05711 1.20897 0.96841 0.94847 1.10886 1.19904 0.91306 0.96236 1.05396 1.20682 0.97939 0.88979 1.03899 1.22713 0.85526 0.98393 0.94647 1.87936 1.48848 1.32159 1.61188 1.20951 0.91743 0.80667 1.00417 0.91053 0.78888 0.78051 0.88616 0.89741 0.93082 0.88437 0.88076 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.30 13.96 55.50 0.77 -23.53 15 2 C 0.05 1.27 5.50 -17.45 -0.10 1.17 15 3 Si 0.88 19.20 27.74 -169.99 -4.71 14.49 15 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 5 H -0.27 -5.84 7.11 56.52 0.40 -5.44 15 6 H -0.26 -5.46 6.52 56.52 0.37 -5.09 15 7 C -0.30 -8.52 10.16 -15.02 -0.15 -8.67 15 8 H 0.13 3.96 7.38 -52.49 -0.39 3.57 15 9 N -0.56 -13.96 5.08 -12.22 -0.06 -14.02 15 10 C 0.51 12.54 7.73 -12.92 -0.10 12.44 15 11 O -0.56 -15.22 15.21 5.15 0.08 -15.14 15 12 C -0.02 -0.37 7.11 -37.29 -0.27 -0.64 15 13 O -0.18 -3.19 10.44 2.25 0.02 -3.16 15 14 C -0.02 -0.26 12.06 29.22 0.35 0.09 15 15 C -0.23 -3.49 6.04 -105.02 -0.63 -4.13 15 16 C -0.12 -2.30 6.02 -104.67 -0.63 -2.93 15 17 C -0.08 -1.29 5.69 -27.63 -0.16 -1.45 15 18 C 0.06 0.84 6.76 37.51 0.25 1.09 15 19 O -0.38 -5.36 10.70 -35.23 -0.38 -5.73 15 20 C 0.14 1.65 7.27 36.03 0.26 1.91 15 21 H 0.28 7.21 8.31 -40.82 -0.34 6.87 15 22 H 0.38 8.58 5.52 -40.82 -0.23 8.35 15 23 H 0.20 1.77 8.06 -52.48 -0.42 1.35 15 24 H 0.10 1.68 7.63 -51.93 -0.40 1.28 15 25 H 0.08 1.45 8.14 -51.93 -0.42 1.02 15 26 H 0.05 0.61 8.08 -51.93 -0.42 0.20 15 27 H 0.10 1.05 8.14 -51.93 -0.42 0.63 15 28 H 0.10 0.96 8.14 -51.92 -0.42 0.54 15 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 15 LS Contribution 255.75 15.07 3.85 3.85 Total: -1.00 -31.87 255.75 -4.30 -36.18 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -2.71 Total: 8.19 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -1.17 Total: -1.13 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.71 Total: -37.54 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.28 Total: -24.04 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.87 -4.30 -36.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117110324.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.313 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds