Wall clock time and date at job start Sun Mar 29 2020 22:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31386 * 1 3 3 Si 1.86797 * 120.00310 * 2 1 4 4 H 1.48502 * 109.47080 * 270.00128 * 3 2 1 5 5 H 1.48505 * 109.47081 * 30.00024 * 3 2 1 6 6 H 1.48495 * 109.46973 * 149.99685 * 3 2 1 7 7 C 1.39031 * 119.99521 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99832 * 0.02562 * 7 2 1 9 9 N 1.36848 * 119.99548 * 180.02562 * 7 2 1 10 10 C 1.34779 * 119.99628 * 180.02562 * 9 7 2 11 11 O 1.21745 * 119.99962 * 0.02562 * 10 9 7 12 12 C 1.46519 * 119.99907 * 179.97438 * 10 9 7 13 13 O 1.35394 * 126.12365 * 0.02950 * 12 10 9 14 14 C 1.34431 * 109.47040 * 179.97438 * 13 12 10 15 15 C 1.33932 * 108.57358 * 359.95872 * 14 13 12 16 16 C 1.35310 * 126.12685 * 179.97438 * 12 10 9 17 17 C 1.50492 * 130.60407 * 0.31184 * 16 12 10 18 18 C 1.53679 * 107.55899 * 164.09789 * 17 16 12 19 19 O 1.42904 * 109.89275 * 48.26194 * 18 17 16 20 20 C 1.43516 * 114.75979 * 287.68707 * 19 18 17 21 21 H 0.97006 * 119.99971 * 0.02562 * 1 2 3 22 22 H 0.97000 * 119.99903 * 359.97438 * 9 7 2 23 23 H 1.08005 * 125.71686 * 179.97438 * 14 13 12 24 24 H 1.08995 * 109.74661 * 44.60937 * 17 16 12 25 25 H 1.09004 * 109.86302 * 283.64952 * 17 16 12 26 26 H 1.09002 * 109.38705 * 288.15683 * 18 17 16 27 27 H 1.08996 * 109.38325 * 168.36370 * 18 17 16 28 28 H 1.09010 * 109.81916 * 171.03620 * 20 19 18 29 29 H 1.08995 * 109.82365 * 291.89402 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.4954 2.0463 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5454 1.4400 0.7001 7 6 2.0089 -1.2041 0.0005 8 1 1.4688 -2.1393 0.0005 9 7 3.3774 -1.2041 0.0011 10 6 4.0512 -2.3714 0.0011 11 8 3.4424 -3.4257 0.0001 12 6 5.5164 -2.3715 0.0011 13 8 6.3146 -1.2779 0.0016 14 6 7.6026 -1.6632 0.0020 15 6 7.6474 -3.0017 0.0026 16 6 6.3141 -3.4644 0.0016 17 6 5.9686 -4.9291 -0.0040 18 6 7.2354 -5.7028 -0.4020 19 8 8.3481 -5.2426 0.3675 20 6 8.8284 -3.9385 0.0093 21 1 -0.4850 0.8401 -0.0004 22 1 3.8624 -0.3641 0.0007 23 1 8.4580 -1.0038 0.0021 24 1 5.1764 -5.1179 -0.7284 25 1 5.6437 -5.2368 0.9900 26 1 7.4380 -5.5448 -1.4613 27 1 7.0829 -6.7661 -0.2174 28 1 9.5642 -3.6020 0.7399 29 1 9.2802 -3.9704 -0.9821 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117110324.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:04 Heat of formation + Delta-G solvation = -89.218987 kcal Electronic energy + Delta-G solvation = -16563.216087 eV Core-core repulsion = 13645.197203 eV Total energy + Delta-G solvation = -2918.018883 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.77302 -40.15779 -39.49495 -36.32914 -34.57391 -33.91453 -32.96983 -30.43401 -27.37059 -27.06603 -24.56516 -23.51568 -21.32624 -20.69224 -20.35825 -18.68422 -17.51939 -17.25666 -17.09243 -16.77433 -16.13321 -15.91536 -15.55759 -15.35227 -14.92139 -14.61259 -14.40228 -13.99389 -13.60143 -13.15360 -13.10716 -12.55708 -12.50383 -12.08669 -11.87133 -11.69839 -11.07616 -10.71204 -10.47844 -10.38973 -9.59665 -8.57384 -6.15435 0.11465 1.24154 1.25701 1.34051 1.37383 1.81383 2.11585 2.16118 2.71336 2.89228 3.06531 3.49947 3.75792 3.94473 4.01059 4.23299 4.37990 4.44955 4.54985 4.74485 4.85831 4.88740 5.01430 5.11518 5.33290 5.41764 5.73545 5.88518 6.16999 6.41117 6.63886 7.15203 7.63956 8.58354 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.044454 B = 0.006744 C = 0.005905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.716500 B = 4151.036071 C = 4740.301922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.001 4.001 3 Si 0.957 3.043 4 H -0.251 1.251 5 H -0.261 1.261 6 H -0.243 1.243 7 C -0.335 4.335 8 H 0.069 0.931 9 N -0.563 5.563 10 C 0.516 3.484 11 O -0.599 6.599 12 C -0.071 4.071 13 O -0.184 6.184 14 C 0.019 3.981 15 C -0.247 4.247 16 C -0.116 4.116 17 C -0.087 4.087 18 C 0.073 3.927 19 O -0.395 6.395 20 C 0.137 3.863 21 H 0.286 0.714 22 H 0.390 0.610 23 H 0.264 0.736 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.120 0.880 28 H 0.133 0.867 29 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.981 -1.120 -1.311 21.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.203 4.203 3 Si 0.776 3.224 4 H -0.176 1.176 5 H -0.186 1.186 6 H -0.167 1.167 7 C -0.464 4.464 8 H 0.087 0.913 9 N -0.200 5.200 10 C 0.305 3.695 11 O -0.486 6.486 12 C -0.123 4.123 13 O -0.081 6.081 14 C -0.049 4.049 15 C -0.249 4.249 16 C -0.120 4.120 17 C -0.124 4.124 18 C -0.004 4.004 19 O -0.314 6.314 20 C 0.061 3.939 21 H 0.096 0.904 22 H 0.226 0.774 23 H 0.280 0.720 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.138 0.862 28 H 0.150 0.850 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 20.287 -1.509 -1.167 20.377 hybrid contribution -0.680 0.989 -0.121 1.207 sum 19.607 -0.519 -1.289 19.656 Atomic orbital electron populations 1.69745 1.07845 1.29934 1.47372 1.26084 0.96501 1.02479 0.95200 0.85471 0.79321 0.77132 0.80445 1.17556 1.18569 1.16691 1.19115 0.80503 0.95826 1.50963 0.91303 1.41970 1.06582 1.07151 1.64304 1.16565 0.83887 0.84369 0.84722 1.90685 1.67844 1.31996 1.58115 1.21359 0.90570 0.85796 1.14544 1.84305 1.17730 1.33797 1.72301 1.24616 0.84391 0.95487 1.00450 1.21343 0.96138 0.95932 1.11485 1.20423 0.93173 0.96339 1.02041 1.20792 0.99719 0.89176 1.02731 1.22705 0.83484 0.98905 0.95273 1.87930 1.48519 1.33266 1.61699 1.21344 0.90686 0.78811 1.03053 0.90369 0.77371 0.72024 0.90548 0.91023 0.91604 0.86247 0.84978 0.89278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.80 13.96 21.68 0.30 -53.50 15 2 C 0.00 -0.04 5.50 84.95 0.47 0.43 15 3 Si 0.96 39.48 27.74 68.60 1.90 41.38 15 4 H -0.25 -9.77 7.11 99.48 0.71 -9.07 15 5 H -0.26 -10.31 7.11 99.48 0.71 -9.61 15 6 H -0.24 -9.07 6.52 99.48 0.65 -8.43 15 7 C -0.34 -20.08 10.16 84.10 0.85 -19.23 15 8 H 0.07 4.79 7.38 -2.91 -0.02 4.76 15 9 N -0.56 -29.22 5.08 -310.76 -1.58 -30.79 15 10 C 0.52 26.59 7.73 86.40 0.67 27.25 15 11 O -0.60 -35.01 15.21 -4.49 -0.07 -35.08 15 12 C -0.07 -2.95 7.11 23.75 0.17 -2.78 15 13 O -0.18 -6.17 10.44 -14.87 -0.16 -6.32 15 14 C 0.02 0.42 12.06 66.84 0.81 1.23 15 15 C -0.25 -6.39 6.04 -20.12 -0.12 -6.51 15 16 C -0.12 -4.15 6.02 -19.90 -0.12 -4.27 15 17 C -0.09 -2.89 5.69 30.01 0.17 -2.72 15 18 C 0.07 1.74 6.76 72.21 0.49 2.23 15 19 O -0.40 -9.57 10.70 -148.98 -1.59 -11.17 15 20 C 0.14 2.53 7.27 71.25 0.52 3.04 15 21 H 0.29 15.28 8.31 -92.70 -0.77 14.51 15 22 H 0.39 17.71 5.52 -92.71 -0.51 17.20 15 23 H 0.26 2.49 8.06 -2.91 -0.02 2.47 15 24 H 0.08 2.82 7.63 -2.39 -0.02 2.80 15 25 H 0.07 2.54 8.14 -2.38 -0.02 2.52 15 26 H 0.07 1.39 8.08 -2.39 -0.02 1.37 15 27 H 0.12 2.29 8.14 -2.39 -0.02 2.27 15 28 H 0.13 1.65 8.14 -2.38 -0.02 1.63 15 29 H 0.09 1.22 8.14 -2.39 -0.02 1.20 15 Total: -1.00 -76.52 255.75 3.33 -73.19 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.62 Total: 23.62 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 3.90 Total: -1.33 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -1.28 Total: -84.29 kcal Atomic # 8 Polarization: -50.75 SS G_CDS: -1.82 Total: -52.57 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 1.90 Total: 41.38 kcal Total: -76.52 3.33 -73.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117110324.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.031 kcal (2) G-P(sol) polarization free energy of solvation -76.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds