Wall clock time and date at job start Sun Mar 29 2020 21:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 112.85032 * 2 1 4 4 C 1.53779 * 113.61081 * 131.20275 * 2 1 3 5 5 C 1.53777 * 87.08291 * 89.11376 * 4 2 1 6 6 N 1.46906 * 113.61355 * 139.97936 * 5 4 2 7 7 C 1.46901 * 110.99793 * 156.53011 * 6 5 4 8 8 C 1.53000 * 109.46769 * 180.02562 * 7 6 5 9 9 H 1.08990 * 109.47170 * 54.99770 * 8 7 6 10 10 C 1.47196 * 109.47160 * 294.99517 * 8 7 6 11 11 N 6.42218 * 134.50762 * 207.66071 * 2 1 3 12 12 C 1.53002 * 109.46776 * 174.99873 * 8 7 6 13 13 C 1.50701 * 109.46807 * 184.99822 * 12 8 7 14 14 H 1.07998 * 120.00496 * 359.97438 * 13 12 8 15 15 C 1.37879 * 119.99849 * 180.02562 * 13 12 8 16 16 N 1.31514 * 119.99832 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00049 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46944 * 59.99994 * 17 15 13 19 19 H 1.48494 * 109.47003 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47091 * 300.00102 * 17 15 13 21 21 C 1.53777 * 87.17337 * 25.38880 * 5 4 2 22 22 H 1.08998 * 109.47337 * 288.80041 * 1 2 3 23 23 H 1.09008 * 109.47276 * 48.80011 * 1 2 3 24 24 H 1.08999 * 109.47811 * 168.80093 * 1 2 3 25 25 H 1.08995 * 109.46907 * 191.19575 * 3 2 1 26 26 H 1.08993 * 109.47259 * 311.20372 * 3 2 1 27 27 H 1.09003 * 109.46681 * 71.19784 * 3 2 1 28 28 H 1.09002 * 113.61685 * 334.56320 * 4 2 1 29 29 H 1.08999 * 113.60989 * 203.66558 * 4 2 1 30 30 H 1.08999 * 113.61414 * 270.79924 * 5 4 2 31 31 H 1.00899 * 110.99995 * 32.57409 * 6 5 4 32 32 H 1.09002 * 109.47401 * 59.99808 * 7 6 5 33 33 H 1.09001 * 109.46874 * 299.99821 * 7 6 5 34 34 H 1.08993 * 109.47416 * 304.99509 * 12 8 7 35 35 H 1.09001 * 109.46966 * 65.00241 * 12 8 7 36 36 H 0.97010 * 119.99808 * 180.02562 * 16 15 13 37 37 H 1.08998 * 113.61610 * 89.15887 * 21 5 4 38 38 H 1.09003 * 113.61672 * 220.05903 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1459 -0.9282 1.0602 5 6 2.0928 -2.0426 0.0018 6 7 3.2771 -2.9118 0.0026 7 6 2.9677 -4.2235 -0.5818 8 6 4.2224 -5.0989 -0.5630 9 1 4.6098 -5.1567 0.4541 10 6 5.2441 -4.5111 -1.4446 11 7 6.0320 -4.0566 -2.1262 12 6 3.8712 -6.5042 -1.0557 13 6 5.0762 -7.3992 -0.9217 14 1 6.0002 -7.0051 -0.5252 15 6 4.9993 -8.7211 -1.3062 16 7 3.8745 -9.2007 -1.7904 17 14 6.4932 -9.8304 -1.1408 18 1 6.9066 -9.8947 0.2841 19 1 6.1522 -11.1943 -1.6188 20 1 7.6081 -9.2840 -1.9555 21 6 2.1447 -0.9317 -1.0603 22 1 -0.3634 0.3312 0.9728 23 1 -0.3634 0.6770 -0.7733 24 1 -0.3635 -1.0080 -0.1996 25 1 3.1942 1.3532 -0.1995 26 1 1.6414 2.0076 -0.7731 27 1 1.9600 1.8733 0.9729 28 1 1.4944 -1.1070 1.9156 29 1 3.1590 -0.6487 1.3495 30 1 1.1573 -2.6019 0.0033 31 1 3.6527 -3.0103 0.9339 32 1 2.6308 -4.0928 -1.6102 33 1 2.1811 -4.7041 -0.0001 34 1 3.0527 -6.9049 -0.4577 35 1 3.5679 -6.4573 -2.1016 36 1 3.8203 -10.1308 -2.0606 37 1 3.1574 -0.6533 -1.3517 38 1 1.4923 -1.1133 -1.9144 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120561724.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:33 Heat of formation + Delta-G solvation = 19.593411 kcal Electronic energy + Delta-G solvation = -16261.339772 eV Core-core repulsion = 13717.424199 eV Total energy + Delta-G solvation = -2543.915573 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.82351 -36.91394 -34.59370 -33.33787 -31.53811 -29.32517 -27.59031 -26.26448 -25.74944 -22.90339 -21.79681 -21.02418 -18.30756 -16.99313 -16.43485 -15.66378 -15.07181 -14.75358 -14.51775 -14.02314 -13.82095 -13.27836 -13.10572 -12.81949 -12.64622 -12.29733 -11.95283 -11.93277 -11.82165 -11.54300 -11.28985 -11.08498 -10.98528 -10.84608 -10.65743 -10.57517 -10.23075 -10.20632 -10.10517 -9.48799 -9.20887 -8.44858 -8.24854 -6.08771 -4.11988 3.31726 3.35945 3.39794 3.76809 3.86249 4.29471 4.37164 4.43614 4.52634 4.77276 4.80292 4.94870 5.14367 5.29277 5.33950 5.46146 5.54946 5.59115 5.65494 5.70445 5.77291 5.80457 5.83004 5.87144 5.97895 6.05053 6.10182 6.32607 6.40590 6.45450 6.53724 7.23247 7.43172 7.52693 7.56234 7.86363 8.24142 8.61620 8.92618 9.53394 11.02101 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.050115 B = 0.004287 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.583972 B = 6529.492498 C = 6793.095622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.092 4.092 3 C -0.133 4.133 4 C -0.133 4.133 5 C 0.061 3.939 6 N -0.682 5.682 7 C 0.066 3.934 8 C 0.009 3.991 9 H 0.098 0.902 10 C 0.256 3.744 11 N -0.480 5.480 12 C 0.032 3.968 13 C -0.527 4.527 14 H 0.056 0.944 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.892 3.108 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.118 4.118 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.341 0.659 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.037 0.963 35 H 0.026 0.974 36 H 0.263 0.737 37 H 0.088 0.912 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.159 15.923 6.559 19.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.093 4.093 3 C -0.190 4.190 4 C -0.171 4.171 5 C -0.049 4.049 6 N -0.313 5.313 7 C -0.064 4.064 8 C -0.013 4.013 9 H 0.116 0.884 10 C -0.061 4.061 11 N -0.157 5.157 12 C -0.007 4.007 13 C -0.565 4.565 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.156 4.156 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.160 0.840 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.801 16.691 4.874 18.671 hybrid contribution -0.016 -1.386 0.987 1.701 sum -6.817 15.305 5.861 17.750 Atomic orbital electron populations 1.21605 0.93430 1.01929 1.01571 1.21706 0.95228 0.94517 0.97805 1.21696 1.00685 0.95367 1.01272 1.23304 1.01409 0.96053 0.96361 1.22955 0.92538 0.92278 0.97106 1.60658 1.29806 1.13727 1.27123 1.22114 0.96046 0.87616 1.00617 1.19219 0.88738 0.96770 0.96571 0.88378 1.28881 0.93261 0.90777 0.93174 1.81001 1.11439 1.12215 1.11065 1.19162 0.97805 0.86241 0.97490 1.21117 0.97399 0.94872 1.43129 0.92548 1.24953 0.95966 0.98149 0.94877 1.69933 1.25440 1.15161 1.42548 0.86651 0.83173 0.79622 0.78620 1.20061 1.21193 1.20202 1.23213 1.01260 0.94977 0.96161 0.92603 0.92503 0.92383 0.92418 0.92841 0.92867 0.91737 0.89451 0.91043 0.84035 0.90614 0.93362 0.94489 0.95580 0.92750 0.89383 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 9.07 37.16 0.34 -0.72 16 2 C -0.09 -0.85 1.39 -153.61 -0.21 -1.07 16 3 C -0.13 -1.14 9.20 37.16 0.34 -0.80 16 4 C -0.13 -1.28 6.82 -25.92 -0.18 -1.45 16 5 C 0.06 0.69 3.77 -66.90 -0.25 0.44 16 6 N -0.68 -9.00 6.25 -105.86 -0.66 -9.66 16 7 C 0.07 0.99 4.90 -3.82 -0.02 0.97 16 8 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 9 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 10 C 0.26 5.44 13.67 -20.74 -0.28 5.16 16 11 N -0.48 -11.12 18.54 42.18 0.78 -10.34 16 12 C 0.03 0.74 4.42 -27.88 -0.12 0.61 16 13 C -0.53 -14.14 8.60 -34.44 -0.30 -14.43 16 14 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -25.68 13.29 55.43 0.74 -24.95 16 17 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 C -0.12 -1.33 7.01 -25.83 -0.18 -1.51 16 22 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 23 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 24 H 0.06 0.49 7.34 -51.93 -0.38 0.11 16 25 H 0.06 0.52 7.96 -51.93 -0.41 0.11 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 29 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 30 H 0.07 0.80 7.39 -51.93 -0.38 0.41 16 31 H 0.34 4.06 8.56 -39.29 -0.34 3.72 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 0.67 8.13 -51.93 -0.42 0.24 16 34 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 37 H 0.09 1.13 7.98 -51.93 -0.41 0.71 16 38 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 318.29 15.07 4.80 4.80 Total: -1.00 -29.75 318.29 -7.08 -36.83 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -6.53 Total: -1.86 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -1.18 Total: -11.21 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.86 Total: -44.94 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.75 -7.08 -36.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120561724.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.427 kcal (2) G-P(sol) polarization free energy of solvation -29.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds