Wall clock time and date at job start Sun Mar 29 2020 21:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 112.85032 * 2 1 4 4 C 1.53779 * 113.61081 * 131.20275 * 2 1 3 5 5 C 1.53777 * 87.08291 * 89.11376 * 4 2 1 6 6 N 1.46906 * 113.61355 * 139.97936 * 5 4 2 7 7 C 1.46901 * 110.99793 * 156.53011 * 6 5 4 8 8 C 1.53000 * 109.46769 * 180.02562 * 7 6 5 9 9 H 1.08990 * 109.47170 * 54.99770 * 8 7 6 10 10 C 1.47196 * 109.47160 * 294.99517 * 8 7 6 11 11 N 6.42218 * 134.50762 * 207.66071 * 2 1 3 12 12 C 1.53002 * 109.46776 * 174.99873 * 8 7 6 13 13 C 1.50701 * 109.46807 * 184.99822 * 12 8 7 14 14 H 1.07998 * 120.00496 * 359.97438 * 13 12 8 15 15 C 1.37879 * 119.99849 * 180.02562 * 13 12 8 16 16 N 1.31514 * 119.99832 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00049 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46944 * 59.99994 * 17 15 13 19 19 H 1.48494 * 109.47003 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47091 * 300.00102 * 17 15 13 21 21 C 1.53777 * 87.17337 * 25.38880 * 5 4 2 22 22 H 1.08998 * 109.47337 * 288.80041 * 1 2 3 23 23 H 1.09008 * 109.47276 * 48.80011 * 1 2 3 24 24 H 1.08999 * 109.47811 * 168.80093 * 1 2 3 25 25 H 1.08995 * 109.46907 * 191.19575 * 3 2 1 26 26 H 1.08993 * 109.47259 * 311.20372 * 3 2 1 27 27 H 1.09003 * 109.46681 * 71.19784 * 3 2 1 28 28 H 1.09002 * 113.61685 * 334.56320 * 4 2 1 29 29 H 1.08999 * 113.60989 * 203.66558 * 4 2 1 30 30 H 1.08999 * 113.61414 * 270.79924 * 5 4 2 31 31 H 1.00899 * 110.99995 * 32.57409 * 6 5 4 32 32 H 1.09002 * 109.47401 * 59.99808 * 7 6 5 33 33 H 1.09001 * 109.46874 * 299.99821 * 7 6 5 34 34 H 1.08993 * 109.47416 * 304.99509 * 12 8 7 35 35 H 1.09001 * 109.46966 * 65.00241 * 12 8 7 36 36 H 0.97010 * 119.99808 * 180.02562 * 16 15 13 37 37 H 1.08998 * 113.61610 * 89.15887 * 21 5 4 38 38 H 1.09003 * 113.61672 * 220.05903 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1459 -0.9282 1.0602 5 6 2.0928 -2.0426 0.0018 6 7 3.2771 -2.9118 0.0026 7 6 2.9677 -4.2235 -0.5818 8 6 4.2224 -5.0989 -0.5630 9 1 4.6098 -5.1567 0.4541 10 6 5.2441 -4.5111 -1.4446 11 7 6.0320 -4.0566 -2.1262 12 6 3.8712 -6.5042 -1.0557 13 6 5.0762 -7.3992 -0.9217 14 1 6.0002 -7.0051 -0.5252 15 6 4.9993 -8.7211 -1.3062 16 7 3.8745 -9.2007 -1.7904 17 14 6.4932 -9.8304 -1.1408 18 1 6.9066 -9.8947 0.2841 19 1 6.1522 -11.1943 -1.6188 20 1 7.6081 -9.2840 -1.9555 21 6 2.1447 -0.9317 -1.0603 22 1 -0.3634 0.3312 0.9728 23 1 -0.3634 0.6770 -0.7733 24 1 -0.3635 -1.0080 -0.1996 25 1 3.1942 1.3532 -0.1995 26 1 1.6414 2.0076 -0.7731 27 1 1.9600 1.8733 0.9729 28 1 1.4944 -1.1070 1.9156 29 1 3.1590 -0.6487 1.3495 30 1 1.1573 -2.6019 0.0033 31 1 3.6527 -3.0103 0.9339 32 1 2.6308 -4.0928 -1.6102 33 1 2.1811 -4.7041 -0.0001 34 1 3.0527 -6.9049 -0.4577 35 1 3.5679 -6.4573 -2.1016 36 1 3.8203 -10.1308 -2.0606 37 1 3.1574 -0.6533 -1.3517 38 1 1.4923 -1.1133 -1.9144 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120561724.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:32 Heat of formation + Delta-G solvation = 2.263897 kcal Electronic energy + Delta-G solvation = -16262.091236 eV Core-core repulsion = 13717.424199 eV Total energy + Delta-G solvation = -2544.667037 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.66414 -38.45988 -36.06940 -35.15113 -33.10577 -30.40890 -28.25079 -27.94202 -26.60857 -24.44842 -23.46623 -21.98822 -19.11488 -18.57456 -18.33748 -16.81728 -16.38942 -16.10706 -15.67495 -15.29625 -14.75819 -14.69502 -14.23485 -14.11866 -13.73776 -13.71340 -13.55716 -13.20144 -13.04560 -12.88732 -12.64791 -12.47674 -12.41863 -12.38470 -11.91441 -11.84999 -11.64868 -11.42402 -11.25518 -10.93600 -10.78459 -10.55114 -9.28117 -8.19441 -6.27965 1.41153 1.43045 1.50075 2.06713 2.13520 2.41701 3.15683 3.24680 3.38767 3.60501 3.74397 3.93178 3.99523 4.28575 4.36697 4.42097 4.55895 4.73128 4.82302 4.83462 4.85911 4.93534 4.99237 5.01403 5.03437 5.07318 5.21711 5.25880 5.28761 5.46351 5.57903 5.62017 5.63670 5.79103 6.14315 6.25510 6.57838 6.82979 6.93422 7.40684 8.91326 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.050115 B = 0.004287 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.583972 B = 6529.492498 C = 6793.095622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.085 4.085 3 C -0.132 4.132 4 C -0.124 4.124 5 C 0.058 3.942 6 N -0.690 5.690 7 C 0.079 3.921 8 C 0.020 3.980 9 H 0.121 0.879 10 C 0.266 3.734 11 N -0.516 5.516 12 C 0.038 3.962 13 C -0.541 4.541 14 H 0.055 0.945 15 C 0.011 3.989 16 N -0.924 5.924 17 Si 0.949 3.051 18 H -0.262 1.262 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.126 4.126 22 H 0.067 0.933 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.350 0.650 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.036 0.964 35 H -0.002 1.002 36 H 0.264 0.736 37 H 0.068 0.932 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.551 16.592 8.049 20.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.086 4.086 3 C -0.189 4.189 4 C -0.162 4.162 5 C -0.051 4.051 6 N -0.322 5.322 7 C -0.051 4.051 8 C -0.002 4.002 9 H 0.139 0.861 10 C -0.050 4.050 11 N -0.194 5.194 12 C -0.001 4.001 13 C -0.579 4.579 14 H 0.073 0.927 15 C -0.188 4.188 16 N -0.564 5.564 17 Si 0.774 3.226 18 H -0.186 1.186 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.164 4.164 22 H 0.086 0.914 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.170 0.830 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.017 0.983 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.192 17.374 6.381 19.856 hybrid contribution 0.096 -1.566 0.499 1.647 sum -7.095 15.807 6.879 18.642 Atomic orbital electron populations 1.21605 0.92359 1.01996 1.02444 1.21700 0.95974 0.94500 0.96403 1.21687 1.00092 0.95066 1.02098 1.23249 1.01639 0.94921 0.96415 1.23039 0.91929 0.92180 0.97973 1.60583 1.31063 1.12741 1.27860 1.21895 0.94364 0.88208 1.00633 1.19198 0.89672 0.94653 0.96667 0.86128 1.29413 0.92896 0.90016 0.92683 1.80999 1.12785 1.13470 1.12148 1.18989 0.96583 0.88581 0.95967 1.21541 0.98364 0.95555 1.42432 0.92718 1.25723 0.98437 0.99751 0.94846 1.70031 1.27165 1.15529 1.43659 0.85744 0.79776 0.77941 0.79094 1.18629 1.20711 1.20735 1.23222 1.00330 0.96175 0.96693 0.91402 0.92095 0.92634 0.93319 0.92398 0.91719 0.90305 0.89706 0.90458 0.82994 0.91809 0.91523 0.94586 0.98314 0.92699 0.91293 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 9.07 71.98 0.65 -1.14 16 2 C -0.09 -1.43 1.39 -51.60 -0.07 -1.50 16 3 C -0.13 -2.05 9.20 71.98 0.66 -1.38 16 4 C -0.12 -2.10 6.82 31.12 0.21 -1.89 16 5 C 0.06 1.22 3.77 45.44 0.17 1.39 16 6 N -0.69 -17.11 6.25 -488.85 -3.06 -20.17 16 7 C 0.08 2.27 4.90 86.30 0.42 2.70 16 8 C 0.02 0.72 2.35 -12.60 -0.03 0.69 16 9 H 0.12 3.85 8.14 -2.39 -0.02 3.83 16 10 C 0.27 11.19 13.67 89.43 1.22 12.42 16 11 N -0.52 -23.90 18.54 20.01 0.37 -23.53 16 12 C 0.04 1.75 4.42 29.85 0.13 1.88 16 13 C -0.54 -28.82 8.60 25.60 0.22 -28.60 16 14 H 0.05 2.87 7.59 -2.91 -0.02 2.85 16 15 C 0.01 0.63 5.46 84.66 0.46 1.09 16 16 N -0.92 -53.36 13.29 21.45 0.28 -53.07 16 17 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 18 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 C -0.13 -2.75 7.01 31.18 0.22 -2.53 16 22 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 24 H 0.05 0.82 7.34 -2.39 -0.02 0.80 16 25 H 0.05 0.83 7.96 -2.39 -0.02 0.82 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 1.13 8.10 -2.39 -0.02 1.11 16 29 H 0.08 1.50 8.10 -2.39 -0.02 1.48 16 30 H 0.08 1.56 7.39 -2.39 -0.02 1.54 16 31 H 0.35 7.55 8.56 -89.69 -0.77 6.79 16 32 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.07 1.69 8.13 -2.39 -0.02 1.67 16 34 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 36 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 37 H 0.07 1.77 7.98 -2.39 -0.02 1.75 16 38 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 Total: -1.00 -62.79 318.29 4.15 -58.64 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.25 Total: 9.44 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: 4.27 Total: -16.89 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -2.40 Total: -96.77 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -62.79 4.15 -58.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120561724.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.899 kcal (2) G-P(sol) polarization free energy of solvation -62.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds