Wall clock time and date at job start Sun Mar 29 2020 21:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 112.84903 * 2 1 4 4 C 1.53781 * 113.61245 * 131.19219 * 2 1 3 5 5 C 1.53786 * 87.07939 * 89.11696 * 4 2 1 6 6 N 1.46898 * 113.61269 * 139.97863 * 5 4 2 7 7 C 1.46906 * 110.99888 * 156.52815 * 6 5 4 8 8 C 1.52999 * 109.46897 * 179.97438 * 7 6 5 9 9 H 1.08994 * 109.47465 * 305.00164 * 8 7 6 10 10 C 1.47203 * 109.47143 * 65.00635 * 8 7 6 11 11 N 6.80040 * 119.76645 * 161.16287 * 2 1 3 12 12 C 1.53003 * 109.47015 * 184.99888 * 8 7 6 13 13 C 1.50696 * 109.47457 * 174.99954 * 12 8 7 14 14 H 1.08002 * 119.99737 * 0.02562 * 13 12 8 15 15 C 1.37872 * 120.00193 * 179.97438 * 13 12 8 16 16 N 1.31513 * 119.99993 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00132 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47168 * 90.00295 * 17 15 13 19 19 H 1.48499 * 109.47021 * 210.00082 * 17 15 13 20 20 H 1.48497 * 109.46711 * 330.00238 * 17 15 13 21 21 C 1.53777 * 87.17072 * 25.39167 * 5 4 2 22 22 H 1.09002 * 109.46979 * 288.80782 * 1 2 3 23 23 H 1.08995 * 109.46879 * 48.80346 * 1 2 3 24 24 H 1.08998 * 109.46976 * 168.80631 * 1 2 3 25 25 H 1.09004 * 109.46680 * 191.19987 * 3 2 1 26 26 H 1.08996 * 109.46884 * 311.19289 * 3 2 1 27 27 H 1.08993 * 109.47068 * 71.19838 * 3 2 1 28 28 H 1.08996 * 113.61729 * 334.56879 * 4 2 1 29 29 H 1.09001 * 113.61259 * 203.66185 * 4 2 1 30 30 H 1.08997 * 113.61522 * 270.79718 * 5 4 2 31 31 H 1.00902 * 111.00533 * 32.57221 * 6 5 4 32 32 H 1.09000 * 109.47033 * 300.00113 * 7 6 5 33 33 H 1.09001 * 109.46544 * 60.00058 * 7 6 5 34 34 H 1.09005 * 109.47422 * 295.00404 * 12 8 7 35 35 H 1.09005 * 109.46949 * 55.00013 * 12 8 7 36 36 H 0.97001 * 120.00283 * 179.97438 * 16 15 13 37 37 H 1.08995 * 113.62054 * 89.16158 * 21 5 4 38 38 H 1.09008 * 113.61145 * 220.06358 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4100 0.0000 4 6 2.1460 -0.9280 1.0603 5 6 2.0929 -2.0426 0.0021 6 7 3.2772 -2.9117 0.0029 7 6 2.9679 -4.2236 -0.5813 8 6 4.2230 -5.0984 -0.5636 9 1 5.0359 -4.5780 -1.0698 10 6 4.6092 -5.3741 0.8298 11 7 4.9062 -5.5870 1.9060 12 6 3.9353 -6.4175 -1.2835 13 6 5.2030 -7.2272 -1.3741 14 1 6.1219 -6.8400 -0.9592 15 6 5.1896 -8.4629 -1.9855 16 7 4.0706 -8.9347 -2.4903 17 14 6.7609 -9.4669 -2.0971 18 1 6.8784 -10.3371 -0.8996 19 1 6.7242 -10.3094 -3.3194 20 1 7.9291 -8.5524 -2.1611 21 6 2.1449 -0.9318 -1.0601 22 1 -0.3633 0.3313 0.9728 23 1 -0.3633 0.6768 -0.7732 24 1 -0.3633 -1.0081 -0.1995 25 1 3.1943 1.3533 -0.1996 26 1 1.6415 2.0075 -0.7733 27 1 1.9600 1.8734 0.9728 28 1 1.4945 -1.1067 1.9157 29 1 3.1591 -0.6485 1.3496 30 1 1.1574 -2.6019 0.0036 31 1 3.6529 -3.0101 0.9342 32 1 2.1813 -4.7040 0.0004 33 1 2.6310 -4.0928 -1.6097 34 1 3.1846 -6.9789 -0.7273 35 1 3.5642 -6.2102 -2.2872 36 1 4.0612 -9.8038 -2.9208 37 1 3.1575 -0.6533 -1.3516 38 1 1.4923 -1.1135 -1.9142 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120561725.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:35 Heat of formation + Delta-G solvation = 19.269420 kcal Electronic energy + Delta-G solvation = -16247.881745 eV Core-core repulsion = 13703.952123 eV Total energy + Delta-G solvation = -2543.929622 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.83310 -37.04817 -34.63304 -33.38055 -31.56106 -29.33455 -27.59351 -26.25162 -25.76113 -22.91925 -21.87777 -20.99007 -18.31706 -16.70018 -16.51287 -15.81935 -15.31552 -14.88205 -14.47486 -14.05026 -13.56240 -13.27370 -13.10640 -12.82665 -12.75043 -12.46447 -12.08937 -11.93763 -11.79727 -11.63858 -11.25338 -11.08836 -11.02405 -10.85753 -10.71479 -10.56130 -10.31584 -10.15890 -10.10929 -9.49837 -9.20235 -8.44965 -8.28343 -6.08886 -4.12004 3.30400 3.36903 3.40456 3.57262 3.62762 4.29091 4.36809 4.43460 4.52486 4.76440 4.79879 4.82841 5.13734 5.29143 5.34045 5.46018 5.54441 5.57011 5.64799 5.70327 5.75499 5.79768 5.82050 5.86554 5.97182 6.08319 6.17437 6.30821 6.36961 6.47890 6.56480 7.22478 7.44108 7.48368 7.54303 7.86238 8.24045 8.40792 8.92605 9.53453 11.02041 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.045633 B = 0.004288 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.438096 B = 6528.772449 C = 6767.561765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.092 4.092 3 C -0.133 4.133 4 C -0.136 4.136 5 C 0.059 3.941 6 N -0.680 5.680 7 C 0.067 3.933 8 C 0.006 3.994 9 H 0.111 0.889 10 C 0.242 3.758 11 N -0.478 5.478 12 C 0.032 3.968 13 C -0.526 4.526 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.115 4.115 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.338 0.662 32 H 0.034 0.966 33 H 0.090 0.910 34 H 0.024 0.976 35 H 0.040 0.960 36 H 0.262 0.738 37 H 0.090 0.910 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.935 17.633 2.096 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.092 4.092 3 C -0.190 4.190 4 C -0.174 4.174 5 C -0.051 4.051 6 N -0.311 5.311 7 C -0.063 4.063 8 C -0.016 4.016 9 H 0.128 0.872 10 C -0.075 4.075 11 N -0.155 5.155 12 C -0.006 4.006 13 C -0.564 4.564 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.154 4.154 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.156 0.844 32 H 0.052 0.948 33 H 0.109 0.891 34 H 0.042 0.958 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.308 17.408 3.040 18.764 hybrid contribution 0.223 -1.134 0.210 1.175 sum -6.086 16.274 3.251 17.676 Atomic orbital electron populations 1.21608 0.93453 1.01935 1.01583 1.21707 0.95230 0.94524 0.97779 1.21696 1.00683 0.95333 1.01289 1.23325 1.01440 0.96143 0.96450 1.22978 0.92564 0.92314 0.97236 1.60724 1.29676 1.13669 1.27044 1.22126 0.95862 0.87394 1.00918 1.19341 0.97899 1.00177 0.84156 0.87155 1.29359 0.92146 0.91290 0.94667 1.81050 1.10011 1.10726 1.13729 1.19165 0.97887 0.87969 0.95627 1.21153 0.95098 1.02503 1.37685 0.92504 1.24952 0.96234 0.97591 0.95188 1.69938 1.25972 1.18979 1.38181 0.86592 0.83703 0.80254 0.77537 1.20698 1.21076 1.19699 1.23204 1.01343 0.94726 0.96083 0.92651 0.92435 0.92392 0.92365 0.92795 0.92913 0.91858 0.89450 0.91106 0.84357 0.94818 0.89129 0.95796 0.94199 0.92806 0.89172 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 9.07 37.16 0.34 -0.72 16 2 C -0.09 -0.84 1.39 -153.60 -0.21 -1.05 16 3 C -0.13 -1.09 9.20 37.16 0.34 -0.75 16 4 C -0.14 -1.37 6.82 -25.92 -0.18 -1.55 16 5 C 0.06 0.68 3.77 -66.90 -0.25 0.43 16 6 N -0.68 -9.19 6.55 -105.86 -0.69 -9.89 16 7 C 0.07 1.02 4.97 -3.82 -0.02 1.00 16 8 C 0.01 0.12 2.42 -93.40 -0.23 -0.11 16 9 H 0.11 1.98 8.14 -51.93 -0.42 1.56 16 10 C 0.24 4.95 12.98 -20.74 -0.27 4.68 16 11 N -0.48 -10.51 18.54 42.17 0.78 -9.73 16 12 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 13 C -0.53 -14.13 8.60 -34.44 -0.30 -14.43 16 14 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 17 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 C -0.12 -1.20 7.01 -25.83 -0.18 -1.39 16 22 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.49 7.34 -51.93 -0.38 0.11 16 25 H 0.06 0.49 7.96 -51.93 -0.41 0.08 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 29 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 30 H 0.07 0.82 7.39 -51.93 -0.38 0.44 16 31 H 0.34 4.74 7.64 -39.29 -0.30 4.44 16 32 H 0.03 0.52 8.13 -51.93 -0.42 0.09 16 33 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 37 H 0.09 1.00 7.98 -51.93 -0.41 0.59 16 38 H 0.06 0.65 8.10 -51.92 -0.42 0.23 16 LS Contribution 317.11 15.07 4.78 4.78 Total: -1.00 -28.94 317.11 -7.09 -36.02 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -6.49 Total: -1.03 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -1.18 Total: -11.62 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.83 Total: -44.57 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.94 -7.09 -36.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120561725.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.294 kcal (2) G-P(sol) polarization free energy of solvation -28.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds