Wall clock time and date at job start Sun Mar 29 2020 21:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 112.84903 * 2 1 4 4 C 1.53781 * 113.61245 * 131.19219 * 2 1 3 5 5 C 1.53786 * 87.07939 * 89.11696 * 4 2 1 6 6 N 1.46898 * 113.61269 * 139.97863 * 5 4 2 7 7 C 1.46906 * 110.99888 * 156.52815 * 6 5 4 8 8 C 1.52999 * 109.46897 * 179.97438 * 7 6 5 9 9 H 1.08994 * 109.47465 * 305.00164 * 8 7 6 10 10 C 1.47203 * 109.47143 * 65.00635 * 8 7 6 11 11 N 6.80040 * 119.76645 * 161.16287 * 2 1 3 12 12 C 1.53003 * 109.47015 * 184.99888 * 8 7 6 13 13 C 1.50696 * 109.47457 * 174.99954 * 12 8 7 14 14 H 1.08002 * 119.99737 * 0.02562 * 13 12 8 15 15 C 1.37872 * 120.00193 * 179.97438 * 13 12 8 16 16 N 1.31513 * 119.99993 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00132 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47168 * 90.00295 * 17 15 13 19 19 H 1.48499 * 109.47021 * 210.00082 * 17 15 13 20 20 H 1.48497 * 109.46711 * 330.00238 * 17 15 13 21 21 C 1.53777 * 87.17072 * 25.39167 * 5 4 2 22 22 H 1.09002 * 109.46979 * 288.80782 * 1 2 3 23 23 H 1.08995 * 109.46879 * 48.80346 * 1 2 3 24 24 H 1.08998 * 109.46976 * 168.80631 * 1 2 3 25 25 H 1.09004 * 109.46680 * 191.19987 * 3 2 1 26 26 H 1.08996 * 109.46884 * 311.19289 * 3 2 1 27 27 H 1.08993 * 109.47068 * 71.19838 * 3 2 1 28 28 H 1.08996 * 113.61729 * 334.56879 * 4 2 1 29 29 H 1.09001 * 113.61259 * 203.66185 * 4 2 1 30 30 H 1.08997 * 113.61522 * 270.79718 * 5 4 2 31 31 H 1.00902 * 111.00533 * 32.57221 * 6 5 4 32 32 H 1.09000 * 109.47033 * 300.00113 * 7 6 5 33 33 H 1.09001 * 109.46544 * 60.00058 * 7 6 5 34 34 H 1.09005 * 109.47422 * 295.00404 * 12 8 7 35 35 H 1.09005 * 109.46949 * 55.00013 * 12 8 7 36 36 H 0.97001 * 120.00283 * 179.97438 * 16 15 13 37 37 H 1.08995 * 113.62054 * 89.16158 * 21 5 4 38 38 H 1.09008 * 113.61145 * 220.06358 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4100 0.0000 4 6 2.1460 -0.9280 1.0603 5 6 2.0929 -2.0426 0.0021 6 7 3.2772 -2.9117 0.0029 7 6 2.9679 -4.2236 -0.5813 8 6 4.2230 -5.0984 -0.5636 9 1 5.0359 -4.5780 -1.0698 10 6 4.6092 -5.3741 0.8298 11 7 4.9062 -5.5870 1.9060 12 6 3.9353 -6.4175 -1.2835 13 6 5.2030 -7.2272 -1.3741 14 1 6.1219 -6.8400 -0.9592 15 6 5.1896 -8.4629 -1.9855 16 7 4.0706 -8.9347 -2.4903 17 14 6.7609 -9.4669 -2.0971 18 1 6.8784 -10.3371 -0.8996 19 1 6.7242 -10.3094 -3.3194 20 1 7.9291 -8.5524 -2.1611 21 6 2.1449 -0.9318 -1.0601 22 1 -0.3633 0.3313 0.9728 23 1 -0.3633 0.6768 -0.7732 24 1 -0.3633 -1.0081 -0.1995 25 1 3.1943 1.3533 -0.1996 26 1 1.6415 2.0075 -0.7733 27 1 1.9600 1.8734 0.9728 28 1 1.4945 -1.1067 1.9157 29 1 3.1591 -0.6485 1.3496 30 1 1.1574 -2.6019 0.0036 31 1 3.6529 -3.0101 0.9342 32 1 2.1813 -4.7040 0.0004 33 1 2.6310 -4.0928 -1.6097 34 1 3.1846 -6.9789 -0.7273 35 1 3.5642 -6.2102 -2.2872 36 1 4.0612 -9.8038 -2.9208 37 1 3.1575 -0.6533 -1.3516 38 1 1.4923 -1.1135 -1.9142 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120561725.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:34 Heat of formation + Delta-G solvation = 2.781292 kcal Electronic energy + Delta-G solvation = -16248.596724 eV Core-core repulsion = 13703.952123 eV Total energy + Delta-G solvation = -2544.644601 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.67749 -38.57957 -36.09088 -35.17429 -33.13625 -30.41336 -28.23724 -27.93678 -26.60705 -24.45934 -23.55023 -21.96514 -19.11030 -18.52121 -18.22861 -16.84531 -16.68584 -16.31659 -15.65629 -15.00835 -14.80277 -14.54761 -14.45126 -14.21089 -13.85126 -13.63948 -13.54989 -13.37173 -13.07486 -12.74957 -12.64024 -12.49429 -12.43698 -12.30238 -12.07105 -11.83980 -11.62886 -11.40559 -11.28094 -10.93229 -10.78521 -10.56139 -9.36704 -8.19956 -6.28453 1.40018 1.41862 1.51504 1.92234 1.94458 2.41254 3.14987 3.23269 3.24109 3.60528 3.72596 3.92626 3.98816 4.24146 4.39401 4.42722 4.52455 4.71148 4.80367 4.84201 4.90623 4.95645 4.98400 5.01908 5.03565 5.10189 5.22113 5.27833 5.32000 5.46339 5.59668 5.60249 5.65197 5.78697 6.12311 6.23231 6.36179 6.73759 6.86426 7.40237 8.91048 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.045633 B = 0.004288 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.438096 B = 6528.772449 C = 6767.561765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.085 4.085 3 C -0.132 4.132 4 C -0.133 4.133 5 C 0.052 3.948 6 N -0.680 5.680 7 C 0.079 3.921 8 C 0.019 3.981 9 H 0.122 0.878 10 C 0.252 3.748 11 N -0.504 5.504 12 C 0.038 3.962 13 C -0.540 4.540 14 H 0.054 0.946 15 C 0.011 3.989 16 N -0.924 5.924 17 Si 0.949 3.051 18 H -0.284 1.284 19 H -0.278 1.278 20 H -0.264 1.264 21 C -0.115 4.115 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.335 0.665 32 H 0.031 0.969 33 H 0.101 0.899 34 H 0.000 1.000 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.083 0.917 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.871 18.852 1.987 20.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.085 4.085 3 C -0.189 4.189 4 C -0.171 4.171 5 C -0.058 4.058 6 N -0.310 5.310 7 C -0.051 4.051 8 C -0.003 4.003 9 H 0.140 0.860 10 C -0.064 4.064 11 N -0.182 5.182 12 C -0.001 4.001 13 C -0.578 4.578 14 H 0.072 0.928 15 C -0.188 4.188 16 N -0.564 5.564 17 Si 0.774 3.226 18 H -0.210 1.210 19 H -0.203 1.203 20 H -0.188 1.188 21 C -0.153 4.153 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.153 0.847 32 H 0.049 0.951 33 H 0.119 0.881 34 H 0.018 0.982 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.244 18.646 2.932 19.881 hybrid contribution 0.183 -1.496 0.252 1.528 sum -6.061 17.150 3.183 18.466 Atomic orbital electron populations 1.21616 0.92614 1.01987 1.02323 1.21692 0.95818 0.94681 0.96326 1.21686 1.00434 0.94795 1.01967 1.23313 1.01523 0.95733 0.96541 1.23113 0.91680 0.92305 0.98681 1.60732 1.30810 1.12688 1.26797 1.21956 0.93747 0.87680 1.01758 1.19230 0.99921 0.98525 0.82601 0.85998 1.29670 0.91335 0.90555 0.94858 1.81050 1.11074 1.11408 1.14660 1.18990 0.95877 0.89621 0.95591 1.21561 0.96191 1.03034 1.37032 0.92758 1.25720 0.99023 0.98861 0.95156 1.70032 1.27726 1.19478 1.39135 0.85686 0.80519 0.78875 0.77472 1.20975 1.20302 1.18815 1.23185 1.01198 0.94633 0.96264 0.91978 0.91566 0.92806 0.92769 0.91986 0.92286 0.91446 0.89764 0.91048 0.84734 0.95077 0.88067 0.98184 0.94589 0.92687 0.89860 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.07 71.98 0.65 -1.17 16 2 C -0.08 -1.38 1.39 -51.59 -0.07 -1.45 16 3 C -0.13 -1.89 9.20 71.98 0.66 -1.22 16 4 C -0.13 -2.48 6.82 31.12 0.21 -2.27 16 5 C 0.05 1.11 3.77 45.44 0.17 1.28 16 6 N -0.68 -17.49 6.55 -488.84 -3.20 -20.69 16 7 C 0.08 2.30 4.97 86.30 0.43 2.73 16 8 C 0.02 0.69 2.42 -12.60 -0.03 0.66 16 9 H 0.12 4.21 8.14 -2.39 -0.02 4.19 16 10 C 0.25 10.16 12.98 89.44 1.16 11.32 16 11 N -0.50 -21.96 18.54 20.01 0.37 -21.59 16 12 C 0.04 1.78 4.42 29.85 0.13 1.91 16 13 C -0.54 -28.89 8.60 25.60 0.22 -28.67 16 14 H 0.05 2.87 7.59 -2.91 -0.02 2.85 16 15 C 0.01 0.63 5.46 84.65 0.46 1.09 16 16 N -0.92 -53.40 13.29 21.45 0.28 -53.11 16 17 Si 0.95 43.66 29.54 68.60 2.03 45.68 16 18 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 20 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 21 C -0.11 -2.21 7.01 31.18 0.22 -1.99 16 22 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.05 0.81 7.34 -2.39 -0.02 0.79 16 25 H 0.05 0.82 7.96 -2.39 -0.02 0.80 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 1.20 8.10 -2.39 -0.02 1.18 16 29 H 0.08 1.63 8.10 -2.39 -0.02 1.61 16 30 H 0.07 1.55 7.39 -2.39 -0.02 1.53 16 31 H 0.33 9.01 7.64 -89.69 -0.69 8.33 16 32 H 0.03 0.93 8.13 -2.39 -0.02 0.91 16 33 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 35 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 37 H 0.08 1.73 7.98 -2.39 -0.02 1.72 16 38 H 0.07 1.24 8.10 -2.38 -0.02 1.22 16 Total: -1.00 -60.18 317.11 4.04 -56.14 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.34 Total: 11.35 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 4.22 Total: -17.78 kcal Atomic # 7 Polarization: -92.85 SS G_CDS: -2.54 Total: -95.39 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -60.18 4.04 -56.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120561725.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.922 kcal (2) G-P(sol) polarization free energy of solvation -60.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds