Wall clock time and date at job start Sun Mar 29 2020 21:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47162 * 2 1 4 4 H 1.08996 * 109.47122 * 305.00281 * 3 2 1 5 5 N 1.46910 * 109.46925 * 64.99940 * 3 2 1 6 6 C 1.46899 * 111.00050 * 242.94120 * 5 3 2 7 7 C 1.52996 * 109.47221 * 185.18405 * 6 5 3 8 8 H 1.08998 * 109.47246 * 54.99802 * 7 6 5 9 9 C 1.47203 * 109.46854 * 294.99779 * 7 6 5 10 10 N 5.17368 * 62.79954 * 58.71075 * 2 1 3 11 11 C 1.53002 * 109.47274 * 175.00210 * 7 6 5 12 12 C 1.50694 * 109.47093 * 184.99795 * 11 7 6 13 13 H 1.08007 * 120.00070 * 359.97438 * 12 11 7 14 14 C 1.37876 * 120.00032 * 179.72398 * 12 11 7 15 15 N 1.31516 * 120.00168 * 0.27117 * 14 12 11 16 16 Si 1.86802 * 120.00263 * 180.27624 * 14 12 11 17 17 H 1.48500 * 109.47270 * 89.99683 * 16 14 12 18 18 H 1.48494 * 109.47403 * 209.99797 * 16 14 12 19 19 H 1.48499 * 109.46967 * 329.99801 * 16 14 12 20 20 C 1.52994 * 109.47239 * 185.00176 * 3 2 1 21 21 C 1.53005 * 117.49577 * 245.37758 * 20 3 2 22 22 C 1.52998 * 117.49933 * 176.71965 * 20 3 2 23 23 H 1.09003 * 109.47050 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47400 * 299.99602 * 1 2 3 25 25 H 1.08999 * 109.47388 * 59.99801 * 1 2 3 26 26 H 1.08997 * 109.46888 * 239.99936 * 2 1 3 27 27 H 1.08995 * 109.46938 * 120.00330 * 2 1 3 28 28 H 1.00894 * 110.99687 * 6.89358 * 5 3 2 29 29 H 1.09004 * 109.46957 * 65.18006 * 6 5 3 30 30 H 1.09007 * 109.47028 * 305.18235 * 6 5 3 31 31 H 1.08999 * 109.47080 * 64.99532 * 11 7 6 32 32 H 1.09004 * 109.46947 * 304.99775 * 11 7 6 33 33 H 0.96991 * 120.00081 * 180.02562 * 15 14 12 34 34 H 1.08997 * 115.55315 * 31.04448 * 20 3 2 35 35 H 1.08995 * 117.50012 * 359.97438 * 21 20 3 36 36 H 1.09000 * 117.49622 * 145.02073 * 21 20 3 37 37 H 1.09003 * 117.49869 * 214.97520 * 22 20 3 38 38 H 1.08997 * 117.49859 * 359.97438 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6514 2.0992 1.2553 6 6 0.7474 3.2288 1.0006 7 6 0.4684 3.9647 2.3126 8 1 1.4120 4.2583 2.7723 9 6 -0.2672 3.0758 3.2268 10 7 -0.8349 2.3898 3.9323 11 6 -0.3709 5.2122 2.0292 12 6 -0.5422 6.0019 3.3011 13 1 -0.0974 5.6491 4.2199 14 6 -1.2625 7.1776 3.2909 15 7 -1.8045 7.6070 2.1722 16 14 -1.4684 8.1606 4.8659 17 1 -0.3543 9.1345 4.9909 18 1 -2.7614 8.8898 4.8289 19 1 -1.4531 7.2389 6.0302 20 6 3.5648 1.4443 -0.1258 21 6 4.3709 1.9745 1.0617 22 6 4.2641 2.8017 -0.2218 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.2342 1.4394 1.8945 29 1 -0.1897 2.8577 0.5856 30 1 1.2127 3.9138 0.2917 31 1 -1.3491 4.9140 1.6520 32 1 0.1335 5.8279 1.2843 33 1 -2.3109 8.4342 2.1649 34 1 3.9907 0.6175 -0.6941 35 1 3.8149 2.3224 1.9323 36 1 5.3273 1.4967 1.2743 37 1 5.1502 2.8678 -0.8531 38 1 3.6378 3.6934 -0.1958 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120590646.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:04 Heat of formation + Delta-G solvation = 27.614861 kcal Electronic energy + Delta-G solvation = -16655.343885 eV Core-core repulsion = 14111.776148 eV Total energy + Delta-G solvation = -2543.567736 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.83099 -36.68916 -34.88505 -33.82409 -32.55636 -30.61208 -27.30832 -25.62123 -22.88079 -22.16028 -21.78458 -21.61381 -19.70035 -16.80114 -16.57625 -15.82811 -15.47682 -14.96419 -14.52810 -14.23886 -13.57601 -13.23428 -12.98620 -12.71253 -12.54112 -12.21495 -12.08660 -11.76835 -11.42649 -11.33258 -11.20751 -11.11269 -10.98510 -10.97194 -10.68658 -10.48279 -10.27001 -10.01741 -9.73699 -9.52413 -9.22054 -8.45276 -8.24442 -6.09341 -4.12413 3.29628 3.36396 3.41010 3.58589 3.64467 3.95845 4.31887 4.43691 4.68707 4.82060 4.93788 5.04752 5.22059 5.23371 5.28722 5.34976 5.52781 5.60896 5.63314 5.73516 5.84825 5.86632 5.88931 5.97920 6.11656 6.13411 6.21490 6.35488 6.43336 6.55992 6.61063 7.18604 7.43601 7.49800 7.54203 7.85807 8.23609 8.41947 8.92227 9.53106 11.01572 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.028615 B = 0.005613 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.257050 B = 4987.488431 C = 5367.532731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.137 4.137 3 C 0.114 3.886 4 H 0.070 0.930 5 N -0.685 5.685 6 C 0.067 3.933 7 C 0.008 3.992 8 H 0.110 0.890 9 C 0.242 3.758 10 N -0.478 5.478 11 C 0.033 3.967 12 C -0.526 4.526 13 H 0.056 0.944 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.152 4.152 21 C -0.161 4.161 22 C -0.177 4.177 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.340 0.660 29 H 0.035 0.965 30 H 0.089 0.911 31 H 0.023 0.977 32 H 0.039 0.961 33 H 0.262 0.738 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.613 -11.289 -7.308 16.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.176 4.176 3 C 0.004 3.996 4 H 0.088 0.912 5 N -0.316 5.316 6 C -0.063 4.063 7 C -0.014 4.014 8 H 0.127 0.873 9 C -0.074 4.074 10 N -0.155 5.155 11 C -0.006 4.006 12 C -0.564 4.564 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.171 4.171 21 C -0.198 4.198 22 C -0.214 4.214 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.159 0.841 29 H 0.053 0.947 30 H 0.107 0.893 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.134 0.866 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.199 -11.788 -6.288 16.221 hybrid contribution -0.808 0.472 0.341 0.996 sum 8.391 -11.317 -5.948 15.292 Atomic orbital electron populations 1.21847 0.95783 1.01786 1.02131 1.21998 0.95838 0.97224 1.02526 1.21049 0.93163 0.93136 0.92205 0.91222 1.60578 1.45777 1.12476 1.12775 1.22184 0.94551 0.92644 0.96903 1.19318 0.98885 0.93175 0.90045 0.87257 1.29320 0.92629 0.92112 0.93351 1.81032 1.10908 1.12976 1.10597 1.19157 0.94574 0.88825 0.98058 1.21147 1.33582 1.06779 0.94885 0.92527 1.24952 0.95308 0.97490 0.96214 1.69935 1.34776 1.22331 1.26030 0.86593 0.77578 0.80192 0.83738 1.20427 1.21179 1.19886 1.22344 0.93655 0.97316 1.03799 1.22909 0.99960 1.03150 0.93780 1.22849 1.02115 0.95049 1.01408 0.92629 0.92686 0.92554 0.91483 0.91460 0.84077 0.94682 0.89280 0.95826 0.94291 0.92810 0.88651 0.86569 0.90516 0.89972 0.88616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.77 37.16 0.36 -1.31 16 2 C -0.14 -1.36 5.18 -26.73 -0.14 -1.49 16 3 C 0.11 1.25 2.54 -67.71 -0.17 1.08 16 4 H 0.07 0.79 7.52 -51.93 -0.39 0.40 16 5 N -0.68 -8.67 4.32 -106.72 -0.46 -9.13 16 6 C 0.07 0.97 4.79 -3.83 -0.02 0.95 16 7 C 0.01 0.14 2.42 -93.41 -0.23 -0.08 16 8 H 0.11 1.92 8.14 -51.93 -0.42 1.50 16 9 C 0.24 4.87 13.07 -20.76 -0.27 4.60 16 10 N -0.48 -10.37 18.54 42.15 0.78 -9.59 16 11 C 0.03 0.75 4.42 -27.89 -0.12 0.63 16 12 C -0.53 -14.01 8.60 -34.44 -0.30 -14.31 16 13 H 0.06 1.51 7.59 -52.48 -0.40 1.11 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 16 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 C -0.15 -1.60 5.72 -90.62 -0.52 -2.12 16 21 C -0.16 -1.80 9.85 -26.69 -0.26 -2.06 16 22 C -0.18 -1.93 10.21 -26.69 -0.27 -2.21 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.68 7.05 -51.93 -0.37 0.31 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 28 H 0.34 4.56 6.46 -39.29 -0.25 4.30 16 29 H 0.03 0.52 8.03 -51.93 -0.42 0.10 16 30 H 0.09 1.23 8.09 -51.93 -0.42 0.81 16 31 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.10 0.91 8.09 -51.93 -0.42 0.49 16 35 H 0.12 1.48 6.92 -51.93 -0.36 1.12 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 318.50 15.07 4.80 4.80 Total: -1.00 -28.50 318.50 -7.59 -36.09 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.39 Total: 1.03 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -2.03 Total: -14.70 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 1.06 Total: -43.56 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.50 -7.59 -36.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120590646.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.705 kcal (2) G-P(sol) polarization free energy of solvation -28.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds