Wall clock time and date at job start Sun Mar 29 2020 21:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47162 * 2 1 4 4 H 1.08996 * 109.47122 * 305.00281 * 3 2 1 5 5 N 1.46910 * 109.46925 * 64.99940 * 3 2 1 6 6 C 1.46899 * 111.00050 * 242.94120 * 5 3 2 7 7 C 1.52996 * 109.47221 * 185.18405 * 6 5 3 8 8 H 1.08998 * 109.47246 * 54.99802 * 7 6 5 9 9 C 1.47203 * 109.46854 * 294.99779 * 7 6 5 10 10 N 5.17368 * 62.79954 * 58.71075 * 2 1 3 11 11 C 1.53002 * 109.47274 * 175.00210 * 7 6 5 12 12 C 1.50694 * 109.47093 * 184.99795 * 11 7 6 13 13 H 1.08007 * 120.00070 * 359.97438 * 12 11 7 14 14 C 1.37876 * 120.00032 * 179.72398 * 12 11 7 15 15 N 1.31516 * 120.00168 * 0.27117 * 14 12 11 16 16 Si 1.86802 * 120.00263 * 180.27624 * 14 12 11 17 17 H 1.48500 * 109.47270 * 89.99683 * 16 14 12 18 18 H 1.48494 * 109.47403 * 209.99797 * 16 14 12 19 19 H 1.48499 * 109.46967 * 329.99801 * 16 14 12 20 20 C 1.52994 * 109.47239 * 185.00176 * 3 2 1 21 21 C 1.53005 * 117.49577 * 245.37758 * 20 3 2 22 22 C 1.52998 * 117.49933 * 176.71965 * 20 3 2 23 23 H 1.09003 * 109.47050 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47400 * 299.99602 * 1 2 3 25 25 H 1.08999 * 109.47388 * 59.99801 * 1 2 3 26 26 H 1.08997 * 109.46888 * 239.99936 * 2 1 3 27 27 H 1.08995 * 109.46938 * 120.00330 * 2 1 3 28 28 H 1.00894 * 110.99687 * 6.89358 * 5 3 2 29 29 H 1.09004 * 109.46957 * 65.18006 * 6 5 3 30 30 H 1.09007 * 109.47028 * 305.18235 * 6 5 3 31 31 H 1.08999 * 109.47080 * 64.99532 * 11 7 6 32 32 H 1.09004 * 109.46947 * 304.99775 * 11 7 6 33 33 H 0.96991 * 120.00081 * 180.02562 * 15 14 12 34 34 H 1.08997 * 115.55315 * 31.04448 * 20 3 2 35 35 H 1.08995 * 117.50012 * 359.97438 * 21 20 3 36 36 H 1.09000 * 117.49622 * 145.02073 * 21 20 3 37 37 H 1.09003 * 117.49869 * 214.97520 * 22 20 3 38 38 H 1.08997 * 117.49859 * 359.97438 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6514 2.0992 1.2553 6 6 0.7474 3.2288 1.0006 7 6 0.4684 3.9647 2.3126 8 1 1.4120 4.2583 2.7723 9 6 -0.2672 3.0758 3.2268 10 7 -0.8349 2.3898 3.9323 11 6 -0.3709 5.2122 2.0292 12 6 -0.5422 6.0019 3.3011 13 1 -0.0974 5.6491 4.2199 14 6 -1.2625 7.1776 3.2909 15 7 -1.8045 7.6070 2.1722 16 14 -1.4684 8.1606 4.8659 17 1 -0.3543 9.1345 4.9909 18 1 -2.7614 8.8898 4.8289 19 1 -1.4531 7.2389 6.0302 20 6 3.5648 1.4443 -0.1258 21 6 4.3709 1.9745 1.0617 22 6 4.2641 2.8017 -0.2218 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.2342 1.4394 1.8945 29 1 -0.1897 2.8577 0.5856 30 1 1.2127 3.9138 0.2917 31 1 -1.3491 4.9140 1.6520 32 1 0.1335 5.8279 1.2843 33 1 -2.3109 8.4342 2.1649 34 1 3.9907 0.6175 -0.6941 35 1 3.8149 2.3224 1.9323 36 1 5.3273 1.4967 1.2743 37 1 5.1502 2.8678 -0.8531 38 1 3.6378 3.6934 -0.1958 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120590646.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:04 Heat of formation + Delta-G solvation = 12.792284 kcal Electronic energy + Delta-G solvation = -16655.986640 eV Core-core repulsion = 14111.776148 eV Total energy + Delta-G solvation = -2544.210491 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.84522 -38.14924 -36.05613 -35.45438 -34.12743 -32.00463 -28.68502 -27.01555 -24.25119 -23.65827 -22.91144 -22.48770 -20.60133 -18.55194 -18.27699 -16.88431 -16.70371 -16.43422 -15.89994 -15.12490 -14.99007 -14.55968 -14.47425 -14.08080 -13.90332 -13.70937 -13.37121 -13.13952 -13.06623 -12.68364 -12.48929 -12.47758 -12.23243 -12.11071 -12.05125 -11.89022 -11.75731 -11.37479 -11.07779 -10.86922 -10.58181 -10.55223 -9.28369 -8.19879 -6.28203 1.40173 1.41705 1.51010 1.95531 1.97941 2.41231 3.05434 3.15275 3.26337 3.33537 3.84994 4.05578 4.19692 4.25921 4.37723 4.41211 4.41400 4.52415 4.65301 4.80610 4.83101 4.91881 4.92267 5.02072 5.07500 5.08566 5.19427 5.30237 5.37718 5.46550 5.51341 5.62498 5.71139 5.78990 6.11071 6.23153 6.43160 6.76368 6.87170 7.40492 8.91071 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.028615 B = 0.005613 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.257050 B = 4987.488431 C = 5367.532731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.131 4.131 3 C 0.113 3.887 4 H 0.069 0.931 5 N -0.681 5.681 6 C 0.080 3.920 7 C 0.021 3.979 8 H 0.120 0.880 9 C 0.252 3.748 10 N -0.505 5.505 11 C 0.039 3.961 12 C -0.539 4.539 13 H 0.053 0.947 14 C 0.012 3.988 15 N -0.924 5.924 16 Si 0.949 3.051 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.276 1.276 20 C -0.145 4.145 21 C -0.167 4.167 22 C -0.180 4.180 23 H 0.064 0.936 24 H 0.032 0.968 25 H 0.056 0.944 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.337 0.663 29 H 0.032 0.968 30 H 0.099 0.901 31 H -0.001 1.001 32 H 0.035 0.965 33 H 0.264 0.736 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.780 -11.966 -7.653 17.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.169 4.169 3 C 0.004 3.996 4 H 0.087 0.913 5 N -0.313 5.313 6 C -0.050 4.050 7 C -0.001 4.001 8 H 0.138 0.862 9 C -0.064 4.064 10 N -0.182 5.182 11 C 0.000 4.000 12 C -0.577 4.577 13 H 0.071 0.929 14 C -0.187 4.187 15 N -0.564 5.564 16 Si 0.775 3.225 17 H -0.192 1.192 18 H -0.210 1.210 19 H -0.201 1.201 20 C -0.164 4.164 21 C -0.204 4.204 22 C -0.217 4.217 23 H 0.083 0.917 24 H 0.052 0.948 25 H 0.076 0.924 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.155 0.845 29 H 0.050 0.950 30 H 0.117 0.883 31 H 0.018 0.982 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.131 0.869 35 H 0.118 0.882 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.381 -12.473 -6.635 17.532 hybrid contribution -1.166 0.664 0.433 1.410 sum 9.215 -11.809 -6.202 16.212 Atomic orbital electron populations 1.21833 0.96417 1.02096 1.01075 1.21946 0.95134 0.96448 1.03369 1.21121 0.93691 0.93715 0.91100 0.91253 1.60560 1.44780 1.12135 1.13780 1.21992 0.95044 0.93276 0.94680 1.19205 0.97891 0.91417 0.91602 0.86208 1.29641 0.92099 0.91730 0.92889 1.81029 1.11598 1.14014 1.11607 1.18974 0.94104 0.90434 0.96468 1.21550 1.33051 1.07142 0.95987 0.92877 1.25713 0.95315 0.98723 0.98985 1.70030 1.35670 1.22892 1.27763 0.85683 0.77828 0.78917 0.80080 1.19151 1.20967 1.20114 1.22393 0.93039 0.97610 1.03382 1.22877 1.00479 1.03692 0.93378 1.22868 1.02541 0.94764 1.01489 0.91691 0.94846 0.92440 0.89612 0.91554 0.84472 0.94991 0.88270 0.98236 0.94720 0.92706 0.86934 0.88243 0.89431 0.88672 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 9.77 71.98 0.70 -2.39 16 2 C -0.13 -2.29 5.18 30.59 0.16 -2.13 16 3 C 0.11 2.26 2.54 44.91 0.11 2.38 16 4 H 0.07 1.43 7.52 -2.39 -0.02 1.41 16 5 N -0.68 -16.46 4.32 -491.57 -2.13 -18.59 16 6 C 0.08 2.26 4.79 86.30 0.41 2.68 16 7 C 0.02 0.74 2.42 -12.60 -0.03 0.71 16 8 H 0.12 4.11 8.14 -2.39 -0.02 4.09 16 9 C 0.25 10.10 13.07 89.44 1.17 11.27 16 10 N -0.50 -21.85 18.54 20.01 0.37 -21.48 16 11 C 0.04 1.81 4.42 29.85 0.13 1.94 16 12 C -0.54 -28.77 8.60 25.60 0.22 -28.55 16 13 H 0.05 2.81 7.59 -2.91 -0.02 2.79 16 14 C 0.01 0.64 5.46 84.65 0.46 1.10 16 15 N -0.92 -53.27 13.29 21.45 0.28 -52.99 16 16 Si 0.95 43.67 29.54 68.60 2.03 45.70 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 20 C -0.15 -2.71 5.72 -10.79 -0.06 -2.77 16 21 C -0.17 -3.44 9.85 30.62 0.30 -3.14 16 22 C -0.18 -3.57 10.21 30.62 0.31 -3.26 16 23 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.03 0.79 7.05 -2.39 -0.02 0.78 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.07 1.20 8.12 -2.39 -0.02 1.18 16 28 H 0.34 8.71 6.46 -89.70 -0.58 8.13 16 29 H 0.03 0.93 8.03 -2.38 -0.02 0.91 16 30 H 0.10 2.63 8.09 -2.38 -0.02 2.61 16 31 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.03 1.63 8.14 -2.39 -0.02 1.62 16 33 H 0.26 14.45 8.31 -92.72 -0.77 13.68 16 34 H 0.11 1.76 8.09 -2.39 -0.02 1.74 16 35 H 0.10 2.41 6.92 -2.39 -0.02 2.39 16 36 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -59.84 318.50 4.90 -54.94 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.45 Total: 14.58 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: 3.89 Total: -22.16 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -1.47 Total: -93.05 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -59.84 4.90 -54.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120590646.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.734 kcal (2) G-P(sol) polarization free energy of solvation -59.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds