Wall clock time and date at job start Sun Mar 29 2020 21:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53009 * 109.47039 * 2 1 4 4 H 1.08999 * 109.47021 * 54.68214 * 3 2 1 5 5 N 1.46905 * 109.46743 * 294.68179 * 3 2 1 6 6 C 1.46901 * 111.00108 * 297.67052 * 5 3 2 7 7 C 1.52997 * 109.47144 * 185.97514 * 6 5 3 8 8 H 1.09004 * 109.47022 * 55.00232 * 7 6 5 9 9 C 1.47202 * 109.47110 * 295.00338 * 7 6 5 10 10 N 5.14554 * 65.73717 * 297.62101 * 2 1 3 11 11 C 1.52995 * 109.47422 * 174.99964 * 7 6 5 12 12 C 1.50700 * 109.47576 * 185.00079 * 11 7 6 13 13 H 1.08001 * 119.99605 * 359.97438 * 12 11 7 14 14 C 1.37877 * 120.00288 * 179.97438 * 12 11 7 15 15 N 1.31512 * 119.99881 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00051 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46929 * 60.00207 * 16 14 12 18 18 H 1.48494 * 109.47272 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47377 * 300.00471 * 16 14 12 20 20 C 1.53000 * 109.47186 * 174.68626 * 3 2 1 21 21 C 1.53002 * 117.49744 * 248.74460 * 20 3 2 22 22 C 1.53001 * 117.49593 * 180.08417 * 20 3 2 23 23 H 1.09010 * 109.47327 * 296.38704 * 1 2 3 24 24 H 1.08997 * 109.47646 * 56.39073 * 1 2 3 25 25 H 1.09000 * 109.47038 * 176.39443 * 1 2 3 26 26 H 1.09001 * 109.47562 * 239.99783 * 2 1 3 27 27 H 1.09006 * 109.47462 * 119.99502 * 2 1 3 28 28 H 1.00901 * 110.99625 * 61.62757 * 5 3 2 29 29 H 1.08991 * 109.47215 * 305.97760 * 6 5 3 30 30 H 1.09003 * 109.46962 * 65.97842 * 6 5 3 31 31 H 1.09003 * 109.47119 * 305.00608 * 11 7 6 32 32 H 1.09001 * 109.47253 * 65.00055 * 11 7 6 33 33 H 0.97000 * 119.99988 * 179.97438 * 15 14 12 34 34 H 1.09001 * 115.54892 * 34.40929 * 20 3 2 35 35 H 1.08997 * 117.49612 * 359.97438 * 21 20 3 36 36 H 1.09000 * 117.49948 * 145.02309 * 21 20 3 37 37 H 1.09005 * 117.49370 * 214.97539 * 22 20 3 38 38 H 1.08999 * 117.50194 * 359.97279 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6009 1.9831 0.8385 5 7 1.6578 2.0970 -1.2585 6 6 2.2777 1.4270 -2.4096 7 6 1.9798 2.2211 -3.6830 8 1 2.3067 3.2527 -3.5527 9 6 0.5324 2.1950 -3.9502 10 7 -0.5845 2.1749 -4.1564 11 6 2.7273 1.5942 -4.8616 12 6 2.5333 2.4457 -6.0898 13 1 1.9360 3.3439 -6.0352 14 6 3.1181 2.0780 -7.2830 15 7 3.8449 0.9840 -7.3495 16 14 2.8769 3.1331 -8.8055 17 1 3.4067 4.4970 -8.5515 18 1 3.6026 2.5247 -9.9493 19 1 1.4293 3.2161 -9.1260 20 6 3.5641 1.4447 0.1336 21 6 4.1580 1.9765 1.4395 22 6 4.2694 2.8023 0.1554 23 1 -0.3634 0.4568 0.9207 24 1 -0.3634 0.5688 -0.8558 25 1 -0.3633 -1.0256 -0.0646 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 0.6543 2.1319 -1.3577 29 1 3.3559 1.3712 -2.2601 30 1 1.8715 0.4201 -2.5059 31 1 3.7899 1.5325 -4.6264 32 1 2.3378 0.5934 -5.0481 33 1 4.2561 0.7252 -8.1890 34 1 4.0798 0.6172 -0.3537 35 1 3.4629 2.3252 2.2032 36 1 5.0648 1.4992 1.8111 37 1 5.2495 2.8678 -0.3173 38 1 3.6477 3.6938 0.0740 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120590647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:06 Heat of formation + Delta-G solvation = 26.876323 kcal Electronic energy + Delta-G solvation = -16662.740159 eV Core-core repulsion = 14119.140397 eV Total energy + Delta-G solvation = -2543.599762 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.97381 -36.67595 -35.06135 -33.76148 -32.39806 -30.58435 -27.16221 -25.61325 -23.27921 -22.31689 -21.72395 -21.64016 -19.45449 -16.71759 -16.54420 -15.84073 -15.68754 -14.89269 -14.47551 -14.26895 -13.83365 -13.19539 -13.06578 -12.77291 -12.44180 -12.32179 -12.01859 -11.75608 -11.47700 -11.40044 -11.22958 -11.05323 -10.84478 -10.77182 -10.60080 -10.52995 -10.23656 -10.16289 -10.03881 -9.49168 -9.21799 -8.43460 -8.20968 -6.07753 -4.10736 3.32452 3.36495 3.40251 3.61422 3.66405 3.81191 4.40038 4.51221 4.55088 4.86265 4.91015 5.02408 5.10677 5.16762 5.30187 5.30333 5.45179 5.58964 5.67581 5.68153 5.72908 5.82482 5.92213 6.00672 6.07634 6.15574 6.21957 6.26335 6.37710 6.47194 6.60009 7.19455 7.45910 7.51686 7.56788 7.87361 8.25651 8.44548 8.93680 9.54522 11.03148 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.027647 B = 0.005745 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.523121 B = 4872.304853 C = 5398.529355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.160 4.160 3 C 0.119 3.881 4 H 0.078 0.922 5 N -0.682 5.682 6 C 0.065 3.935 7 C 0.008 3.992 8 H 0.109 0.891 9 C 0.243 3.757 10 N -0.480 5.480 11 C 0.033 3.967 12 C -0.526 4.526 13 H 0.056 0.944 14 C 0.063 3.937 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.277 1.277 20 C -0.147 4.147 21 C -0.184 4.184 22 C -0.158 4.158 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.337 0.663 29 H 0.092 0.908 30 H 0.035 0.965 31 H 0.039 0.961 32 H 0.023 0.977 33 H 0.263 0.737 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.683 -0.466 16.665 16.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.199 4.199 3 C 0.009 3.991 4 H 0.097 0.903 5 N -0.312 5.312 6 C -0.065 4.065 7 C -0.014 4.014 8 H 0.127 0.873 9 C -0.073 4.073 10 N -0.157 5.157 11 C -0.005 4.005 12 C -0.564 4.564 13 H 0.074 0.926 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.203 1.203 20 C -0.166 4.166 21 C -0.222 4.222 22 C -0.195 4.195 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.156 0.844 29 H 0.111 0.889 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.420 -0.112 16.268 16.273 hybrid contribution -0.193 -0.366 -1.019 1.099 sum -0.613 -0.478 15.249 15.269 Atomic orbital electron populations 1.21777 0.95899 1.01820 1.01640 1.22260 0.96084 0.98795 1.02772 1.21136 0.92811 0.92298 0.92823 0.90342 1.60737 1.14371 1.54648 1.01473 1.22091 1.00887 0.95126 0.88363 1.19328 0.82330 1.03157 0.96628 0.87289 1.29355 0.94990 0.91729 0.91251 1.81023 1.13812 1.10317 1.10563 1.19145 0.95482 0.96213 0.89703 1.21119 1.31790 1.09288 0.94219 0.92588 1.24947 0.94959 0.95112 0.98925 1.69928 1.33027 1.23501 1.26653 0.86658 0.78377 0.80670 0.82396 1.20011 1.21204 1.20288 1.22227 0.94437 0.98645 1.01272 1.22989 1.02705 1.05121 0.91378 1.22821 1.01688 0.95253 0.99735 0.92767 0.92814 0.92666 0.91234 0.91567 0.84350 0.88927 0.94681 0.94305 0.95879 0.92774 0.87997 0.89217 0.89237 0.89054 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.76 37.15 0.36 -1.27 16 2 C -0.16 -1.70 5.23 -26.73 -0.14 -1.84 16 3 C 0.12 1.32 2.74 -67.71 -0.19 1.13 16 4 H 0.08 0.83 7.90 -51.93 -0.41 0.42 16 5 N -0.68 -8.94 6.25 -106.72 -0.67 -9.61 16 6 C 0.07 0.98 4.40 -3.83 -0.02 0.96 16 7 C 0.01 0.14 2.42 -93.41 -0.23 -0.08 16 8 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 9 C 0.24 4.98 13.08 -20.76 -0.27 4.71 16 10 N -0.48 -10.55 18.54 42.15 0.78 -9.77 16 11 C 0.03 0.78 4.42 -27.89 -0.12 0.65 16 12 C -0.53 -14.12 8.60 -34.44 -0.30 -14.42 16 13 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 16 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C -0.15 -1.58 3.77 -90.62 -0.34 -1.92 16 21 C -0.18 -1.72 10.18 -26.69 -0.27 -1.99 16 22 C -0.16 -1.69 10.13 -26.69 -0.27 -1.96 16 23 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 24 H 0.05 0.65 6.66 -51.93 -0.35 0.30 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.82 6.33 -51.93 -0.33 0.49 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.34 4.62 6.37 -39.29 -0.25 4.37 16 29 H 0.09 1.34 6.63 -51.93 -0.34 1.00 16 30 H 0.03 0.54 6.56 -51.93 -0.34 0.20 16 31 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 34 H 0.10 1.12 7.85 -51.93 -0.41 0.72 16 35 H 0.09 0.78 8.05 -51.93 -0.42 0.36 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 314.65 15.07 4.74 4.74 Total: -1.00 -28.80 314.65 -7.49 -36.29 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.18 Total: 1.27 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -1.88 Total: -14.39 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.85 Total: -44.34 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.80 -7.49 -36.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120590647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.167 kcal (2) G-P(sol) polarization free energy of solvation -28.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds