Wall clock time and date at job start Sun Mar 29 2020 21:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53009 * 109.47039 * 2 1 4 4 H 1.08999 * 109.47021 * 54.68214 * 3 2 1 5 5 N 1.46905 * 109.46743 * 294.68179 * 3 2 1 6 6 C 1.46901 * 111.00108 * 297.67052 * 5 3 2 7 7 C 1.52997 * 109.47144 * 185.97514 * 6 5 3 8 8 H 1.09004 * 109.47022 * 55.00232 * 7 6 5 9 9 C 1.47202 * 109.47110 * 295.00338 * 7 6 5 10 10 N 5.14554 * 65.73717 * 297.62101 * 2 1 3 11 11 C 1.52995 * 109.47422 * 174.99964 * 7 6 5 12 12 C 1.50700 * 109.47576 * 185.00079 * 11 7 6 13 13 H 1.08001 * 119.99605 * 359.97438 * 12 11 7 14 14 C 1.37877 * 120.00288 * 179.97438 * 12 11 7 15 15 N 1.31512 * 119.99881 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00051 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46929 * 60.00207 * 16 14 12 18 18 H 1.48494 * 109.47272 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47377 * 300.00471 * 16 14 12 20 20 C 1.53000 * 109.47186 * 174.68626 * 3 2 1 21 21 C 1.53002 * 117.49744 * 248.74460 * 20 3 2 22 22 C 1.53001 * 117.49593 * 180.08417 * 20 3 2 23 23 H 1.09010 * 109.47327 * 296.38704 * 1 2 3 24 24 H 1.08997 * 109.47646 * 56.39073 * 1 2 3 25 25 H 1.09000 * 109.47038 * 176.39443 * 1 2 3 26 26 H 1.09001 * 109.47562 * 239.99783 * 2 1 3 27 27 H 1.09006 * 109.47462 * 119.99502 * 2 1 3 28 28 H 1.00901 * 110.99625 * 61.62757 * 5 3 2 29 29 H 1.08991 * 109.47215 * 305.97760 * 6 5 3 30 30 H 1.09003 * 109.46962 * 65.97842 * 6 5 3 31 31 H 1.09003 * 109.47119 * 305.00608 * 11 7 6 32 32 H 1.09001 * 109.47253 * 65.00055 * 11 7 6 33 33 H 0.97000 * 119.99988 * 179.97438 * 15 14 12 34 34 H 1.09001 * 115.54892 * 34.40929 * 20 3 2 35 35 H 1.08997 * 117.49612 * 359.97438 * 21 20 3 36 36 H 1.09000 * 117.49948 * 145.02309 * 21 20 3 37 37 H 1.09005 * 117.49370 * 214.97539 * 22 20 3 38 38 H 1.08999 * 117.50194 * 359.97279 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6009 1.9831 0.8385 5 7 1.6578 2.0970 -1.2585 6 6 2.2777 1.4270 -2.4096 7 6 1.9798 2.2211 -3.6830 8 1 2.3067 3.2527 -3.5527 9 6 0.5324 2.1950 -3.9502 10 7 -0.5845 2.1749 -4.1564 11 6 2.7273 1.5942 -4.8616 12 6 2.5333 2.4457 -6.0898 13 1 1.9360 3.3439 -6.0352 14 6 3.1181 2.0780 -7.2830 15 7 3.8449 0.9840 -7.3495 16 14 2.8769 3.1331 -8.8055 17 1 3.4067 4.4970 -8.5515 18 1 3.6026 2.5247 -9.9493 19 1 1.4293 3.2161 -9.1260 20 6 3.5641 1.4447 0.1336 21 6 4.1580 1.9765 1.4395 22 6 4.2694 2.8023 0.1554 23 1 -0.3634 0.4568 0.9207 24 1 -0.3634 0.5688 -0.8558 25 1 -0.3633 -1.0256 -0.0646 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 0.6543 2.1319 -1.3577 29 1 3.3559 1.3712 -2.2601 30 1 1.8715 0.4201 -2.5059 31 1 3.7899 1.5325 -4.6264 32 1 2.3378 0.5934 -5.0481 33 1 4.2561 0.7252 -8.1890 34 1 4.0798 0.6172 -0.3537 35 1 3.4629 2.3252 2.2032 36 1 5.0648 1.4992 1.8111 37 1 5.2495 2.8678 -0.3173 38 1 3.6477 3.6938 0.0740 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120590647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:05 Heat of formation + Delta-G solvation = 10.794799 kcal Electronic energy + Delta-G solvation = -16663.437506 eV Core-core repulsion = 14119.140397 eV Total energy + Delta-G solvation = -2544.297109 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.98713 -38.13445 -36.18489 -35.49915 -34.00212 -31.93390 -28.65010 -26.87028 -24.71663 -23.59488 -23.02594 -22.49629 -20.41166 -18.49648 -18.22634 -17.01574 -16.80180 -16.44182 -15.72811 -15.25522 -15.00098 -14.70436 -14.44255 -14.26126 -13.89421 -13.62291 -13.55678 -13.10331 -12.99551 -12.71422 -12.50222 -12.36472 -12.31830 -12.16596 -12.00620 -11.72128 -11.60829 -11.35641 -11.18565 -10.93597 -10.83948 -10.54827 -9.28060 -8.19210 -6.27675 1.41265 1.42602 1.49947 1.95674 1.97969 2.41718 2.94124 3.15816 3.27531 3.47550 3.70803 4.02974 4.15775 4.28054 4.32645 4.33941 4.43594 4.47820 4.60190 4.70259 4.83699 4.90672 4.96466 4.99418 5.02574 5.11515 5.19623 5.26945 5.34464 5.44628 5.47147 5.53382 5.63190 5.79390 6.09085 6.23140 6.42696 6.76438 6.87345 7.40834 8.91595 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.027647 B = 0.005745 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.523121 B = 4872.304853 C = 5398.529355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.156 4.156 3 C 0.122 3.878 4 H 0.089 0.911 5 N -0.681 5.681 6 C 0.080 3.920 7 C 0.020 3.980 8 H 0.120 0.880 9 C 0.253 3.747 10 N -0.506 5.506 11 C 0.040 3.960 12 C -0.540 4.540 13 H 0.053 0.947 14 C 0.012 3.988 15 N -0.924 5.924 16 Si 0.949 3.051 17 H -0.263 1.263 18 H -0.281 1.281 19 H -0.281 1.281 20 C -0.157 4.157 21 C -0.166 4.166 22 C -0.168 4.168 23 H 0.067 0.933 24 H 0.035 0.965 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.335 0.665 29 H 0.100 0.900 30 H 0.031 0.969 31 H 0.034 0.966 32 H -0.002 1.002 33 H 0.264 0.736 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.874 0.102 17.888 17.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.195 4.195 3 C 0.013 3.987 4 H 0.107 0.893 5 N -0.311 5.311 6 C -0.050 4.050 7 C -0.002 4.002 8 H 0.138 0.862 9 C -0.063 4.063 10 N -0.183 5.183 11 C 0.001 3.999 12 C -0.578 4.578 13 H 0.072 0.928 14 C -0.187 4.187 15 N -0.564 5.564 16 Si 0.774 3.226 17 H -0.187 1.187 18 H -0.207 1.207 19 H -0.207 1.207 20 C -0.176 4.176 21 C -0.203 4.203 22 C -0.205 4.205 23 H 0.086 0.914 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.154 0.846 29 H 0.118 0.882 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.017 0.983 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.228 0.465 17.507 17.515 hybrid contribution -0.255 -0.553 -1.360 1.490 sum -0.483 -0.088 16.148 16.155 Atomic orbital electron populations 1.21767 0.95881 1.01825 1.01523 1.22214 0.96018 0.98432 1.02810 1.21190 0.93233 0.92488 0.91793 0.89253 1.60710 1.14073 1.54713 1.01624 1.21868 1.01435 0.94239 0.87498 1.19225 0.80603 1.03851 0.96537 0.86234 1.29663 0.95260 0.90904 0.90498 1.81020 1.14694 1.11273 1.11329 1.18963 0.95635 0.94717 0.90571 1.21529 1.31214 1.09477 0.95607 0.92834 1.25716 0.94914 0.96261 1.01833 1.70027 1.34035 1.24907 1.27393 0.85744 0.77935 0.79679 0.79195 1.18742 1.20656 1.20677 1.22224 0.94054 0.98525 1.02801 1.23049 1.02982 1.03529 0.90755 1.22815 1.01533 0.94949 1.01237 0.91377 0.94608 0.92421 0.92644 0.90042 0.84645 0.88154 0.95121 0.94763 0.98338 0.92699 0.88431 0.88193 0.88136 0.89182 0.88854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.76 71.98 0.70 -2.32 16 2 C -0.16 -3.05 5.23 30.59 0.16 -2.89 16 3 C 0.12 2.47 2.74 44.92 0.12 2.59 16 4 H 0.09 1.66 7.90 -2.39 -0.02 1.64 16 5 N -0.68 -16.99 6.25 -491.56 -3.07 -20.06 16 6 C 0.08 2.33 4.40 86.30 0.38 2.71 16 7 C 0.02 0.72 2.42 -12.60 -0.03 0.69 16 8 H 0.12 4.19 8.14 -2.38 -0.02 4.17 16 9 C 0.25 10.27 13.08 89.44 1.17 11.44 16 10 N -0.51 -22.11 18.54 20.01 0.37 -21.74 16 11 C 0.04 1.88 4.42 29.85 0.13 2.01 16 12 C -0.54 -29.01 8.60 25.60 0.22 -28.79 16 13 H 0.05 2.84 7.59 -2.91 -0.02 2.82 16 14 C 0.01 0.65 5.46 84.66 0.46 1.11 16 15 N -0.92 -53.51 13.29 21.45 0.28 -53.22 16 16 Si 0.95 43.75 29.54 68.60 2.03 45.78 16 17 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 C -0.16 -3.07 3.77 -10.79 -0.04 -3.11 16 21 C -0.17 -2.65 10.18 30.62 0.31 -2.34 16 22 C -0.17 -3.31 10.13 30.62 0.31 -3.00 16 23 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 24 H 0.03 0.83 6.66 -2.39 -0.02 0.81 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.05 1.25 6.33 -2.39 -0.02 1.24 16 27 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.33 8.80 6.37 -89.69 -0.57 8.23 16 29 H 0.10 2.81 6.63 -2.39 -0.02 2.79 16 30 H 0.03 0.93 6.56 -2.39 -0.02 0.92 16 31 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 34 H 0.10 2.00 7.85 -2.39 -0.02 1.98 16 35 H 0.10 1.42 8.05 -2.39 -0.02 1.40 16 36 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.09 1.97 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -60.26 314.65 3.97 -56.29 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.46 Total: 14.83 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: 3.90 Total: -21.88 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -2.42 Total: -95.02 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -60.26 3.97 -56.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120590647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.083 kcal (2) G-P(sol) polarization free energy of solvation -60.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds