Wall clock time and date at job start Sun Mar 29 2020 21:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36935 * 120.00118 * 2 1 4 4 H 1.08003 * 120.00294 * 200.37479 * 3 2 1 5 5 C 1.38811 * 120.00270 * 20.37048 * 3 2 1 6 6 N 1.31618 * 119.99613 * 14.98456 * 5 3 2 7 7 Si 1.86794 * 120.00331 * 194.97977 * 5 3 2 8 8 H 1.48505 * 109.46902 * 85.00716 * 7 5 3 9 9 H 1.48501 * 109.47152 * 205.00166 * 7 5 3 10 10 H 1.48499 * 109.47221 * 325.00476 * 7 5 3 11 11 C 1.46500 * 120.00105 * 179.97438 * 2 1 3 12 12 C 1.50700 * 109.47360 * 270.00212 * 11 2 1 13 13 C 1.34851 * 125.89145 * 265.02565 * 12 11 2 14 14 C 1.40898 * 107.41640 * 179.97438 * 13 12 11 15 15 C 1.34850 * 107.41556 * 0.02562 * 14 13 12 16 16 C 1.50698 * 125.88950 * 179.97438 * 15 14 13 17 17 C 1.53004 * 109.47128 * 240.02063 * 16 15 14 18 18 C 1.53008 * 109.46990 * 0.02562 * 16 15 14 19 19 C 1.52997 * 109.47655 * 120.02031 * 16 15 14 20 20 N 1.36343 * 108.22358 * 359.97438 * 15 14 13 21 21 H 0.96994 * 125.64213 * 180.26681 * 20 15 14 22 22 H 1.09000 * 109.47423 * 275.09900 * 1 2 3 23 23 H 1.09001 * 109.47065 * 35.10050 * 1 2 3 24 24 H 1.08998 * 109.47201 * 155.09307 * 1 2 3 25 25 H 0.97002 * 120.00032 * 180.02562 * 6 5 3 26 26 H 1.08997 * 109.47398 * 150.00342 * 11 2 1 27 27 H 1.09004 * 109.46742 * 30.00092 * 11 2 1 28 28 H 1.07994 * 126.29226 * 359.97403 * 13 12 11 29 29 H 1.07994 * 126.29072 * 179.97438 * 14 13 12 30 30 H 1.09003 * 109.46691 * 59.99868 * 17 16 15 31 31 H 1.08992 * 109.47297 * 179.97438 * 17 16 15 32 32 H 1.09002 * 109.47053 * 300.00070 * 17 16 15 33 33 H 1.08990 * 109.46778 * 60.00452 * 18 16 15 34 34 H 1.09001 * 109.47031 * 180.02562 * 18 16 15 35 35 H 1.08999 * 109.46824 * 299.99992 * 18 16 15 36 36 H 1.08998 * 109.47247 * 59.99551 * 19 16 15 37 37 H 1.09001 * 109.47305 * 179.97438 * 19 16 15 38 38 H 1.09004 * 109.47053 * 300.00274 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1790 1.2152 -0.3256 5 6 1.5208 2.3505 0.4184 6 7 0.3877 2.2835 1.0848 7 14 2.2826 4.0126 0.0360 8 1 1.8683 4.4462 -1.3225 9 1 1.8225 5.0098 1.0356 10 1 3.7625 3.9032 0.0909 11 6 2.1975 -1.2687 0.0006 12 6 2.4486 -1.7032 1.4215 13 6 3.5676 -1.4643 2.1352 14 6 3.3866 -2.0398 3.4085 15 6 2.1642 -2.6090 3.4241 16 6 1.5464 -3.3434 4.5860 17 6 1.2378 -4.7839 4.1729 18 6 2.5232 -3.3485 5.7636 19 6 0.2509 -2.6433 5.0012 20 7 1.5836 -2.4055 2.2074 21 1 0.6997 -2.7070 1.9454 22 1 -0.3634 0.0913 1.0236 23 1 -0.3633 0.8408 -0.5909 24 1 -0.3633 -0.9321 -0.4328 25 1 -0.0520 3.0973 1.3769 26 1 3.1499 -1.1386 -0.5132 27 1 1.6084 -2.0286 -0.5130 28 1 4.4417 -0.9300 1.7937 29 1 4.0967 -2.0281 4.2221 30 1 2.1608 -5.2826 3.8771 31 1 0.7914 -5.3152 5.0134 32 1 0.5419 -4.7802 3.3340 33 1 2.7429 -2.3223 6.0579 34 1 2.0766 -3.8800 6.6039 35 1 3.4462 -3.8472 5.4679 36 1 -0.4450 -2.6395 4.1624 37 1 -0.1962 -3.1748 5.8414 38 1 0.4707 -1.6170 5.2955 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137378384.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:29 Heat of formation + Delta-G solvation = 33.170471 kcal Electronic energy + Delta-G solvation = -17202.562482 eV Core-core repulsion = 14659.235655 eV Total energy + Delta-G solvation = -2543.326827 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.05693 -37.79822 -36.90018 -33.39813 -31.80016 -30.23700 -28.13324 -28.04323 -27.91970 -26.51611 -23.31377 -21.99376 -20.93053 -19.90288 -18.76935 -17.55881 -16.72456 -15.72318 -15.50248 -15.16903 -15.06273 -14.95409 -14.49928 -14.15392 -14.01107 -13.60384 -13.20622 -13.06250 -13.06147 -12.79517 -12.68753 -12.57218 -12.51618 -12.12899 -11.97013 -11.94869 -11.81354 -11.77351 -11.59228 -10.64356 -9.53845 -8.92298 -8.52757 -7.83056 -5.27952 1.45086 1.46335 1.54146 1.57450 2.25133 2.53838 2.61039 3.32552 3.80464 3.84539 3.97787 4.11333 4.38041 4.45218 4.51491 4.73809 4.74184 4.76081 4.77149 4.88824 4.94106 4.96667 5.02209 5.06748 5.11056 5.21554 5.27723 5.38354 5.44146 5.56474 5.60510 5.69282 5.71844 6.30232 6.35481 6.47991 6.96480 7.14783 7.85198 8.27358 9.20677 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.031929 B = 0.006499 C = 0.006424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.744058 B = 4307.523848 C = 4357.412295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.606 5.606 3 C -0.254 4.254 4 H 0.072 0.928 5 C -0.055 4.055 6 N -0.938 5.938 7 Si 0.967 3.033 8 H -0.282 1.282 9 H -0.298 1.298 10 H -0.271 1.271 11 C 0.207 3.793 12 C 0.012 3.988 13 C -0.224 4.224 14 C -0.219 4.219 15 C 0.021 3.979 16 C 0.003 3.997 17 C -0.134 4.134 18 C -0.131 4.131 19 C -0.138 4.138 20 N -0.544 5.544 21 H 0.410 0.590 22 H -0.002 1.002 23 H 0.018 0.982 24 H 0.034 0.966 25 H 0.245 0.755 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.116 0.884 29 H 0.136 0.864 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.043 0.957 37 H 0.084 0.916 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.070 -13.884 6.085 15.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.327 5.327 3 C -0.385 4.385 4 H 0.090 0.910 5 C -0.249 4.249 6 N -0.585 5.585 7 Si 0.795 3.205 8 H -0.209 1.209 9 H -0.225 1.225 10 H -0.196 1.196 11 C 0.080 3.920 12 C -0.104 4.104 13 C -0.250 4.250 14 C -0.243 4.243 15 C -0.092 4.092 16 C 0.002 3.998 17 C -0.191 4.191 18 C -0.189 4.189 19 C -0.196 4.196 20 N -0.139 5.139 21 H 0.246 0.754 22 H 0.017 0.983 23 H 0.037 0.963 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.134 0.866 29 H 0.154 0.846 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.103 0.897 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.833 -13.797 6.052 15.089 hybrid contribution -0.083 1.418 -0.196 1.434 sum 0.750 -12.379 5.856 13.715 Atomic orbital electron populations 1.20548 0.82615 0.96167 0.97395 1.44322 1.02069 1.01339 1.85015 1.19524 0.97225 0.85888 1.35823 0.91012 1.25721 0.98690 1.01648 0.98891 1.70256 1.20299 1.26899 1.41076 0.85283 0.78295 0.79848 0.77054 1.20908 1.22516 1.19567 1.19627 0.97153 0.86901 0.88325 1.21762 0.91087 0.99946 0.97601 1.20698 0.99626 1.08486 0.96158 1.20743 0.98202 1.07221 0.98179 1.20543 0.94602 1.06164 0.87893 1.19171 0.95235 0.94490 0.90879 1.21846 1.01603 0.93829 1.01830 1.21785 0.98702 1.01959 0.96426 1.21876 0.96063 0.99981 1.01646 1.41767 1.15874 1.44742 1.11475 0.75351 0.98324 0.96268 0.94798 0.94578 0.91031 0.91282 0.86612 0.84582 0.92460 0.90084 0.93305 0.93378 0.90088 0.91941 0.93786 0.89723 0.94422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.80 9.02 127.77 1.15 9.95 16 2 N -0.61 -30.61 2.91 -731.32 -2.13 -32.74 16 3 C -0.25 -14.25 9.68 84.03 0.81 -13.44 16 4 H 0.07 3.92 7.86 -2.91 -0.02 3.90 16 5 C -0.05 -3.15 5.06 84.86 0.43 -2.72 16 6 N -0.94 -56.99 10.67 21.65 0.23 -56.76 16 7 Si 0.97 46.46 29.58 68.60 2.03 48.49 16 8 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 9 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 C 0.21 8.52 6.24 85.63 0.53 9.05 16 12 C 0.01 0.49 6.75 41.08 0.28 0.77 16 13 C -0.22 -9.40 10.77 22.14 0.24 -9.16 16 14 C -0.22 -8.08 9.78 22.14 0.22 -7.86 16 15 C 0.02 0.70 5.59 41.08 0.23 0.93 16 16 C 0.00 0.08 0.99 -52.93 -0.05 0.03 16 17 C -0.13 -2.63 8.46 71.98 0.61 -2.02 16 18 C -0.13 -2.77 7.37 71.98 0.53 -2.24 16 19 C -0.14 -3.43 8.46 71.98 0.61 -2.82 16 20 N -0.54 -19.28 6.08 -171.11 -1.04 -20.32 16 21 H 0.41 12.89 8.96 -92.71 -0.83 12.06 16 22 H 0.00 -0.09 7.40 -2.39 -0.02 -0.10 16 23 H 0.02 1.01 7.21 -2.39 -0.02 1.00 16 24 H 0.03 1.38 7.84 -2.39 -0.02 1.36 16 25 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 26 H 0.07 2.87 8.03 -2.39 -0.02 2.85 16 27 H 0.07 2.43 7.86 -2.38 -0.02 2.41 16 28 H 0.12 4.86 8.06 -2.91 -0.02 4.83 16 29 H 0.14 4.47 7.27 -2.91 -0.02 4.45 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 1.13 7.92 -2.39 -0.02 1.12 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.28 7.92 -2.39 -0.02 1.26 16 36 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -66.59 310.35 4.87 -61.73 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.19 Total: 19.13 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: 5.59 Total: -19.54 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -2.94 Total: -109.81 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -66.59 4.87 -61.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137378384.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.898 kcal (2) G-P(sol) polarization free energy of solvation -66.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds