Wall clock time and date at job start Sun Mar 29 2020 21:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46905 * 109.47350 * 2 1 4 4 C 1.46898 * 110.99930 * 72.51747 * 3 2 1 5 5 C 1.50701 * 109.47434 * 285.76370 * 4 3 2 6 6 H 1.07994 * 119.99693 * 358.04118 * 5 4 3 7 7 C 1.37878 * 120.00261 * 178.04089 * 5 4 3 8 8 N 1.31518 * 119.99573 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00007 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47560 * 59.99513 * 9 7 5 11 11 H 1.48507 * 109.47288 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46903 * 299.99728 * 9 7 5 13 13 C 1.46897 * 110.99948 * 196.47441 * 3 2 1 14 14 C 1.50696 * 109.47209 * 66.04596 * 13 3 2 15 15 N 1.31943 * 120.05518 * 89.99960 * 14 13 3 16 16 C 1.32253 * 120.08918 * 179.97438 * 15 14 13 17 17 C 1.38203 * 120.18299 * 0.02562 * 16 15 14 18 18 N 1.32217 * 120.10863 * 359.97438 * 17 16 15 19 19 C 1.32680 * 119.91402 * 0.02562 * 18 17 16 20 20 N 1.39000 * 120.09437 * 179.97438 * 19 18 17 21 21 H 1.09001 * 109.46693 * 288.58822 * 1 2 3 22 22 H 1.09003 * 109.46918 * 48.58018 * 1 2 3 23 23 H 1.08989 * 109.47027 * 168.58265 * 1 2 3 24 24 H 1.09001 * 109.47273 * 240.00003 * 2 1 3 25 25 H 1.09001 * 109.47204 * 119.99512 * 2 1 3 26 26 H 1.09006 * 109.47260 * 45.76871 * 4 3 2 27 27 H 1.09005 * 109.47168 * 165.76485 * 4 3 2 28 28 H 0.96998 * 119.99445 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.47245 * 306.04140 * 13 3 2 30 30 H 1.09000 * 109.47206 * 186.04796 * 13 3 2 31 31 H 1.07996 * 119.90634 * 180.02562 * 16 15 14 32 32 H 1.08003 * 119.94489 * 180.02562 * 17 16 15 33 33 H 0.96995 * 120.00099 * 0.02562 * 20 19 18 34 34 H 0.97006 * 119.99761 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8068 2.0187 1.3081 5 6 0.3451 2.3443 1.4766 6 1 -0.3506 2.1334 0.6780 7 6 -0.1041 2.9114 2.6504 8 7 0.7432 3.1676 3.6231 9 14 -1.9160 3.3143 2.8595 10 1 -2.7176 2.0707 2.7321 11 1 -2.1388 3.9111 4.2010 12 1 -2.3322 4.2809 1.8118 13 6 3.4351 1.4429 -0.3889 14 6 3.5793 1.0116 -1.8256 15 7 3.5053 1.9045 -2.7942 16 6 3.6323 1.5269 -4.0553 17 6 3.8424 0.1964 -4.3644 18 7 3.9179 -0.7047 -3.3997 19 6 3.7911 -0.3304 -2.1332 20 7 3.8692 -1.2746 -1.1161 21 1 -0.3633 0.3276 0.9741 22 1 -0.3633 0.6799 -0.7707 23 1 -0.3633 -1.0072 -0.2034 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.1204 1.3360 2.0979 27 1 2.3925 2.9361 1.3671 28 1 0.4271 3.5662 4.4490 29 1 4.0151 0.7772 0.2503 30 1 3.8011 2.4636 -0.2774 31 1 3.5716 2.2603 -4.8457 32 1 3.9460 -0.1077 -5.3955 33 1 4.0171 -2.2086 -1.3318 34 1 3.7759 -0.9994 -0.1906 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140015507.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:41 Heat of formation + Delta-G solvation = 65.163107 kcal Electronic energy + Delta-G solvation = -16894.983434 eV Core-core repulsion = 14249.503568 eV Total energy + Delta-G solvation = -2645.479866 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.94686 -37.24445 -35.20683 -33.71764 -32.36472 -30.62951 -29.21783 -27.60272 -25.38992 -23.54257 -22.49597 -22.18088 -19.96997 -18.10955 -17.40519 -16.59376 -15.60194 -15.47068 -15.34066 -14.56178 -14.25873 -14.08344 -13.63030 -13.43938 -12.49174 -12.03223 -11.87192 -11.65849 -11.34926 -11.21058 -11.07912 -10.87260 -10.73586 -10.54846 -10.37616 -10.08272 -9.55066 -9.08610 -8.80491 -8.37995 -7.85839 -7.31170 -6.00992 -3.99397 1.13909 1.52319 3.34410 3.38687 3.41767 3.42421 3.96648 4.42560 4.48915 4.57410 4.74669 5.03844 5.33658 5.35154 5.39524 5.53779 5.74359 5.85259 6.08496 6.18356 6.31795 6.48205 6.52491 6.85469 7.01994 7.15529 7.28345 7.33301 7.35416 7.82813 7.84136 8.08826 8.15914 8.21028 8.52803 9.06005 9.62130 11.09740 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.039292 B = 0.006203 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.436273 B = 4513.079616 C = 4589.175825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.054 3.946 3 N -0.526 5.526 4 C 0.193 3.807 5 C -0.503 4.503 6 H 0.073 0.927 7 C 0.053 3.947 8 N -0.901 5.901 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.109 3.891 14 C 0.052 3.948 15 N -0.388 5.388 16 C -0.021 4.021 17 C 0.086 3.914 18 N -0.509 5.509 19 C 0.360 3.640 20 N -0.841 5.841 21 H 0.088 0.912 22 H 0.054 0.946 23 H 0.029 0.971 24 H 0.057 0.943 25 H 0.021 0.979 26 H -0.004 1.004 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.034 0.966 30 H 0.092 0.908 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.402 0.598 34 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.364 -7.632 -10.792 14.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.075 4.075 3 N -0.252 5.252 4 C 0.068 3.932 5 C -0.542 4.542 6 H 0.091 0.909 7 C -0.148 4.148 8 N -0.540 5.540 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.021 4.021 14 C -0.099 4.099 15 N -0.102 5.102 16 C -0.180 4.180 17 C -0.073 4.073 18 N -0.233 5.233 19 C 0.119 3.881 20 N -0.389 5.389 21 H 0.107 0.893 22 H 0.073 0.927 23 H 0.048 0.952 24 H 0.075 0.925 25 H 0.040 0.960 26 H 0.013 0.987 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.111 0.889 31 H 0.179 0.821 32 H 0.180 0.820 33 H 0.231 0.769 34 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 6.102 -7.243 -10.980 14.500 hybrid contribution -0.481 -0.471 0.950 1.165 sum 5.620 -7.714 -10.030 13.845 Atomic orbital electron populations 1.22030 0.94945 0.98572 1.04768 1.22182 0.97345 0.89595 0.98340 1.62194 1.12673 1.16089 1.34221 1.19818 0.97870 0.93654 0.81821 1.21338 0.93158 1.39412 1.00264 0.90864 1.24989 0.97764 0.95981 0.96025 1.69949 1.34294 1.44044 1.05754 0.86606 0.85271 0.78728 0.77099 1.20292 1.21440 1.20177 1.20781 0.92001 1.01890 0.87380 1.21710 1.02506 0.88312 0.97348 1.68100 1.05712 1.36544 0.99867 1.23339 1.04213 0.96091 0.94380 1.23330 0.95070 0.90368 0.98558 1.67911 1.18884 1.37688 0.98795 1.19121 0.91812 0.88977 0.88198 1.42531 1.80579 1.08984 1.06763 0.89316 0.92728 0.95197 0.92473 0.96043 0.98671 0.95290 0.92962 0.94844 0.88936 0.82093 0.81952 0.76885 0.75304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.48 37.16 0.32 -2.58 16 2 C 0.05 1.02 4.40 -3.82 -0.02 1.01 16 3 N -0.53 -11.20 4.48 -237.51 -1.06 -12.26 16 4 C 0.19 4.88 4.75 -4.98 -0.02 4.85 16 5 C -0.50 -13.73 7.05 -34.44 -0.24 -13.97 16 6 H 0.07 1.98 5.56 -52.49 -0.29 1.69 16 7 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 8 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 9 Si 0.89 21.51 29.54 -169.99 -5.02 16.48 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.11 1.98 5.06 -4.98 -0.03 1.96 16 14 C 0.05 0.89 5.86 -82.15 -0.48 0.41 16 15 N -0.39 -6.70 10.41 -9.12 -0.09 -6.79 16 16 C -0.02 -0.28 11.21 -17.38 -0.19 -0.47 16 17 C 0.09 1.08 11.22 -17.40 -0.20 0.88 16 18 N -0.51 -7.41 10.53 -12.24 -0.13 -7.54 16 19 C 0.36 5.47 6.56 -154.72 -1.02 4.45 16 20 N -0.84 -10.33 7.60 31.21 0.24 -10.09 16 21 H 0.09 1.98 5.77 -51.93 -0.30 1.68 16 22 H 0.05 1.13 7.73 -51.93 -0.40 0.73 16 23 H 0.03 0.50 8.14 -51.94 -0.42 0.08 16 24 H 0.06 0.99 4.42 -51.93 -0.23 0.77 16 25 H 0.02 0.40 7.61 -51.93 -0.40 0.00 16 26 H 0.00 -0.12 7.81 -51.93 -0.41 -0.52 16 27 H 0.03 0.79 7.76 -51.93 -0.40 0.38 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.03 0.54 6.54 -51.93 -0.34 0.20 16 30 H 0.09 1.76 7.84 -51.93 -0.41 1.35 16 31 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.16 1.36 8.06 -52.48 -0.42 0.94 16 33 H 0.40 4.05 8.95 -40.82 -0.37 3.68 16 34 H 0.41 5.03 5.48 -40.82 -0.22 4.80 16 LS Contribution 275.25 15.07 4.15 4.15 Total: -1.00 -31.26 275.25 -7.33 -38.59 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -4.16 Total: 5.11 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -1.98 Total: -2.07 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: -0.31 Total: -62.27 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.26 -7.33 -38.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140015507.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.756 kcal (2) G-P(sol) polarization free energy of solvation -31.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds