Wall clock time and date at job start Sun Mar 29 2020 21:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46905 * 109.47350 * 2 1 4 4 C 1.46898 * 110.99930 * 72.51747 * 3 2 1 5 5 C 1.50701 * 109.47434 * 285.76370 * 4 3 2 6 6 H 1.07994 * 119.99693 * 358.04118 * 5 4 3 7 7 C 1.37878 * 120.00261 * 178.04089 * 5 4 3 8 8 N 1.31518 * 119.99573 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00007 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47560 * 59.99513 * 9 7 5 11 11 H 1.48507 * 109.47288 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46903 * 299.99728 * 9 7 5 13 13 C 1.46897 * 110.99948 * 196.47441 * 3 2 1 14 14 C 1.50696 * 109.47209 * 66.04596 * 13 3 2 15 15 N 1.31943 * 120.05518 * 89.99960 * 14 13 3 16 16 C 1.32253 * 120.08918 * 179.97438 * 15 14 13 17 17 C 1.38203 * 120.18299 * 0.02562 * 16 15 14 18 18 N 1.32217 * 120.10863 * 359.97438 * 17 16 15 19 19 C 1.32680 * 119.91402 * 0.02562 * 18 17 16 20 20 N 1.39000 * 120.09437 * 179.97438 * 19 18 17 21 21 H 1.09001 * 109.46693 * 288.58822 * 1 2 3 22 22 H 1.09003 * 109.46918 * 48.58018 * 1 2 3 23 23 H 1.08989 * 109.47027 * 168.58265 * 1 2 3 24 24 H 1.09001 * 109.47273 * 240.00003 * 2 1 3 25 25 H 1.09001 * 109.47204 * 119.99512 * 2 1 3 26 26 H 1.09006 * 109.47260 * 45.76871 * 4 3 2 27 27 H 1.09005 * 109.47168 * 165.76485 * 4 3 2 28 28 H 0.96998 * 119.99445 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.47245 * 306.04140 * 13 3 2 30 30 H 1.09000 * 109.47206 * 186.04796 * 13 3 2 31 31 H 1.07996 * 119.90634 * 180.02562 * 16 15 14 32 32 H 1.08003 * 119.94489 * 180.02562 * 17 16 15 33 33 H 0.96995 * 120.00099 * 0.02562 * 20 19 18 34 34 H 0.97006 * 119.99761 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8068 2.0187 1.3081 5 6 0.3451 2.3443 1.4766 6 1 -0.3506 2.1334 0.6780 7 6 -0.1041 2.9114 2.6504 8 7 0.7432 3.1676 3.6231 9 14 -1.9160 3.3143 2.8595 10 1 -2.7176 2.0707 2.7321 11 1 -2.1388 3.9111 4.2010 12 1 -2.3322 4.2809 1.8118 13 6 3.4351 1.4429 -0.3889 14 6 3.5793 1.0116 -1.8256 15 7 3.5053 1.9045 -2.7942 16 6 3.6323 1.5269 -4.0553 17 6 3.8424 0.1964 -4.3644 18 7 3.9179 -0.7047 -3.3997 19 6 3.7911 -0.3304 -2.1332 20 7 3.8692 -1.2746 -1.1161 21 1 -0.3633 0.3276 0.9741 22 1 -0.3633 0.6799 -0.7707 23 1 -0.3633 -1.0072 -0.2034 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.1204 1.3360 2.0979 27 1 2.3925 2.9361 1.3671 28 1 0.4271 3.5662 4.4490 29 1 4.0151 0.7772 0.2503 30 1 3.8011 2.4636 -0.2774 31 1 3.5716 2.2603 -4.8457 32 1 3.9460 -0.1077 -5.3955 33 1 4.0171 -2.2086 -1.3318 34 1 3.7759 -0.9994 -0.1906 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140015507.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:41 Heat of formation + Delta-G solvation = 41.207990 kcal Electronic energy + Delta-G solvation = -16896.022206 eV Core-core repulsion = 14249.503568 eV Total energy + Delta-G solvation = -2646.518637 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.07707 -38.81597 -36.33951 -35.13915 -34.22849 -32.03710 -30.60027 -29.34640 -26.94795 -24.69362 -24.22462 -23.62900 -21.59160 -19.23327 -18.60160 -18.42062 -17.08096 -16.81176 -16.48468 -16.30752 -15.64862 -15.42261 -15.17457 -14.86487 -14.22468 -13.55167 -13.42145 -13.16070 -13.11119 -12.75807 -12.58395 -12.55149 -12.37681 -12.23041 -12.01384 -11.42987 -11.33168 -11.04067 -10.50303 -9.94611 -9.06452 -8.88142 -8.14226 -6.19712 0.04141 0.41216 1.42459 1.44838 1.52306 2.39408 2.43169 2.82598 3.17783 3.29089 3.43010 3.55521 3.70995 4.18773 4.23225 4.36317 4.43866 4.55827 4.57997 4.71874 4.81311 4.97455 5.09101 5.23922 5.32372 5.46466 5.63023 5.73968 5.96590 6.11817 6.36250 6.39151 6.61382 6.78863 6.92511 7.12907 7.46205 8.96099 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.039292 B = 0.006203 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.436273 B = 4513.079616 C = 4589.175825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.057 3.943 3 N -0.537 5.537 4 C 0.208 3.792 5 C -0.511 4.511 6 H 0.073 0.927 7 C 0.001 3.999 8 N -0.936 5.936 9 Si 0.959 3.041 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.113 3.887 14 C 0.020 3.980 15 N -0.423 5.423 16 C -0.026 4.026 17 C 0.103 3.897 18 N -0.518 5.518 19 C 0.357 3.643 20 N -0.831 5.831 21 H 0.059 0.941 22 H 0.040 0.960 23 H 0.061 0.939 24 H 0.079 0.921 25 H 0.026 0.974 26 H -0.025 1.025 27 H 0.000 1.000 28 H 0.262 0.738 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.194 0.806 32 H 0.210 0.790 33 H 0.414 0.586 34 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.952 -8.962 -12.817 16.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.070 4.070 3 N -0.263 5.263 4 C 0.082 3.918 5 C -0.549 4.549 6 H 0.091 0.909 7 C -0.196 4.196 8 N -0.577 5.577 9 Si 0.785 3.215 10 H -0.191 1.191 11 H -0.211 1.211 12 H -0.199 1.199 13 C -0.016 4.016 14 C -0.129 4.129 15 N -0.137 5.137 16 C -0.187 4.187 17 C -0.058 4.058 18 N -0.242 5.242 19 C 0.116 3.884 20 N -0.378 5.378 21 H 0.078 0.922 22 H 0.059 0.941 23 H 0.079 0.921 24 H 0.097 0.903 25 H 0.044 0.956 26 H -0.007 1.007 27 H 0.018 0.982 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.210 0.790 32 H 0.226 0.774 33 H 0.245 0.755 34 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 5.697 -8.618 -12.984 16.592 hybrid contribution -0.274 -0.086 1.415 1.444 sum 5.423 -8.704 -11.569 15.460 Atomic orbital electron populations 1.21931 0.95452 0.99972 1.02509 1.22205 0.96852 0.88483 0.99503 1.62075 1.15200 1.17526 1.31463 1.19459 0.96533 0.92309 0.83457 1.21640 0.94092 1.38937 1.00258 0.90883 1.25815 1.02098 0.95921 0.95780 1.70074 1.36282 1.45068 1.06267 0.85585 0.80151 0.78799 0.77012 1.19108 1.21090 1.19851 1.20675 0.90243 1.01340 0.89332 1.21352 1.05872 0.89392 0.96333 1.67995 1.06524 1.37731 1.01463 1.23936 1.03417 0.97643 0.93688 1.24103 0.91939 0.89644 1.00100 1.68065 1.19258 1.38182 0.98667 1.19115 0.91670 0.88560 0.89040 1.42476 1.79750 1.09289 1.06292 0.92171 0.94104 0.92059 0.90336 0.95551 1.00721 0.98180 0.92944 0.93178 0.90915 0.78953 0.77378 0.75458 0.75325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.49 8.48 71.98 0.61 -4.88 16 2 C 0.06 2.15 4.40 86.30 0.38 2.53 16 3 N -0.54 -23.29 4.48 -905.35 -4.05 -27.34 16 4 C 0.21 10.94 4.75 85.56 0.41 11.35 16 5 C -0.51 -28.49 7.05 25.60 0.18 -28.31 16 6 H 0.07 4.01 5.56 -2.91 -0.02 3.99 16 7 C 0.00 0.07 5.46 84.65 0.46 0.54 16 8 N -0.94 -55.98 13.29 21.45 0.28 -55.69 16 9 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 13 C 0.11 4.21 5.06 85.56 0.43 4.65 16 14 C 0.02 0.67 5.86 42.80 0.25 0.92 16 15 N -0.42 -14.22 10.41 -182.77 -1.90 -16.12 16 16 C -0.03 -0.64 11.21 84.62 0.95 0.31 16 17 C 0.10 2.17 11.22 84.63 0.95 3.12 16 18 N -0.52 -13.52 10.53 -192.64 -2.03 -15.55 16 19 C 0.36 10.19 6.56 133.02 0.87 11.07 16 20 N -0.83 -18.92 7.60 -55.18 -0.42 -19.33 16 21 H 0.06 2.68 5.77 -2.39 -0.01 2.67 16 22 H 0.04 1.67 7.73 -2.39 -0.02 1.65 16 23 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.08 2.61 4.42 -2.39 -0.01 2.60 16 25 H 0.03 0.96 7.61 -2.39 -0.02 0.94 16 26 H -0.02 -1.38 7.81 -2.38 -0.02 -1.40 16 27 H 0.00 0.00 7.76 -2.38 -0.02 -0.01 16 28 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 29 H 0.05 1.65 6.54 -2.39 -0.02 1.64 16 30 H 0.07 2.92 7.84 -2.39 -0.02 2.90 16 31 H 0.19 3.25 8.06 -2.91 -0.02 3.22 16 32 H 0.21 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.41 7.39 8.95 -92.71 -0.83 6.56 16 34 H 0.41 9.53 5.48 -92.70 -0.51 9.02 16 Total: -1.00 -68.40 275.25 -0.80 -69.20 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -0.20 Total: 17.09 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 5.49 Total: 1.29 kcal Atomic # 7 Polarization: -125.92 SS G_CDS: -8.12 Total: -134.04 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -68.40 -0.80 -69.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140015507.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.407 kcal (2) G-P(sol) polarization free energy of solvation -68.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds