Wall clock time and date at job start Sun Mar 29 2020 22:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 120.00024 * 2 1 4 4 H 1.48505 * 109.46885 * 269.99487 * 3 2 1 5 5 H 1.48501 * 109.47127 * 29.99632 * 3 2 1 6 6 H 1.48496 * 109.47066 * 149.99564 * 3 2 1 7 7 C 1.37877 * 120.00256 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99536 * 0.02562 * 7 2 1 9 9 C 1.50690 * 120.00128 * 180.02562 * 7 2 1 10 10 C 1.50706 * 109.47257 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99629 * 0.02562 * 10 9 7 12 12 N 1.34770 * 120.00171 * 180.02562 * 10 9 7 13 13 C 1.40140 * 120.00040 * 184.48522 * 12 10 9 14 14 C 1.38653 * 120.09755 * 325.30839 * 13 12 10 15 15 C 1.38251 * 120.00933 * 179.97438 * 14 13 12 16 16 C 1.38303 * 120.20976 * 0.02562 * 15 14 13 17 17 C 1.38197 * 120.19810 * 359.97438 * 16 15 14 18 18 C 1.38785 * 119.98872 * 0.02562 * 17 16 15 19 19 S 1.76204 * 120.10175 * 180.02562 * 18 17 16 20 20 H 0.97002 * 120.00030 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47233 * 60.00741 * 9 7 2 22 22 H 1.09001 * 109.47833 * 300.00498 * 9 7 2 23 23 H 0.96997 * 120.00460 * 4.48415 * 12 10 9 24 24 H 1.08002 * 119.99688 * 0.25078 * 14 13 12 25 25 H 1.07998 * 119.89741 * 179.97438 * 15 14 13 26 26 H 1.07995 * 119.89836 * 179.97438 * 16 15 14 27 27 H 1.08001 * 120.00157 * 180.02562 * 17 16 15 28 28 H 1.34494 * 103.00039 * 90.00222 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0139 -2.6148 0.0010 11 8 3.2257 -3.5368 0.0000 12 7 5.3389 -2.8611 0.0020 13 6 5.8068 -4.1786 -0.0930 14 6 5.0991 -5.2124 0.5010 15 6 5.5621 -6.5116 0.4057 16 6 6.7311 -6.7851 -0.2808 17 6 7.4434 -5.7614 -0.8762 18 6 6.9861 -4.4541 -0.7856 19 16 7.8916 -3.1466 -1.5442 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8912 22 1 3.8753 -0.6803 -0.8888 23 1 5.9687 -2.1264 0.0684 24 1 4.1836 -5.0033 1.0345 25 1 5.0096 -7.3153 0.8694 26 1 7.0884 -7.8018 -0.3518 27 1 8.3557 -5.9786 -1.4118 28 1 7.3594 -3.0861 -2.7779 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143198627.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:44 Heat of formation + Delta-G solvation = -7.115692 kcal Electronic energy + Delta-G solvation = -14012.021483 eV Core-core repulsion = 11540.315737 eV Total energy + Delta-G solvation = -2471.705746 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.09786 -38.07535 -34.38482 -32.95943 -30.98991 -30.42023 -28.78293 -23.95422 -23.03267 -21.97252 -19.74864 -18.28312 -17.29876 -16.98583 -16.01226 -15.82230 -15.12172 -14.54716 -14.19765 -14.09470 -13.58870 -13.26546 -12.97266 -12.27423 -11.95572 -11.75608 -11.57339 -10.92395 -10.80883 -10.65939 -10.12100 -10.05188 -9.36651 -9.07142 -8.82018 -8.65132 -8.25868 -8.01145 -6.10350 -4.11508 0.91820 1.39577 1.68237 2.75637 3.20581 3.26393 3.30835 3.31411 3.49178 3.83381 4.34644 4.85412 5.02810 5.19995 5.22503 5.41401 5.53267 5.75617 5.99711 6.22878 6.29441 6.48537 6.49415 6.64696 6.78588 7.08102 7.41874 7.86086 8.44946 8.78916 9.07664 9.46775 11.02285 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.035357 B = 0.006449 C = 0.005571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.730531 B = 4340.903278 C = 5025.088923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.874 3.126 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.518 4.518 8 H 0.093 0.907 9 C -0.027 4.027 10 C 0.521 3.479 11 O -0.509 6.509 12 N -0.687 5.687 13 C 0.209 3.791 14 C -0.133 4.133 15 C -0.073 4.073 16 C -0.156 4.156 17 C -0.056 4.056 18 C -0.150 4.150 19 S -0.131 6.131 20 H 0.265 0.735 21 H 0.052 0.948 22 H 0.046 0.954 23 H 0.415 0.585 24 H 0.149 0.851 25 H 0.128 0.872 26 H 0.126 0.874 27 H 0.132 0.868 28 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.743 -8.476 -0.582 18.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.131 4.131 3 Si 0.701 3.299 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.556 4.556 8 H 0.111 0.889 9 C -0.066 4.066 10 C 0.311 3.689 11 O -0.382 6.382 12 N -0.334 5.334 13 C 0.109 3.891 14 C -0.155 4.155 15 C -0.092 4.092 16 C -0.177 4.177 17 C -0.077 4.077 18 C -0.265 4.265 19 S 0.026 5.974 20 H 0.075 0.925 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.253 0.747 24 H 0.167 0.833 25 H 0.146 0.854 26 H 0.144 0.856 27 H 0.150 0.850 28 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 16.508 -8.190 -0.800 18.446 hybrid contribution -0.298 0.551 -0.594 0.864 sum 16.210 -7.639 -1.394 17.974 Atomic orbital electron populations 1.69886 1.06192 1.26983 1.50175 1.24961 0.94815 0.98779 0.94577 0.86892 0.80397 0.83977 0.78664 1.20097 1.20988 1.18922 1.20944 0.87366 0.95834 1.51441 0.88915 1.19716 0.99851 0.88030 0.99049 1.21796 0.79660 0.94170 0.73253 1.90582 1.54878 1.46636 1.46082 1.44381 1.09239 1.06081 1.73663 1.18018 0.91972 0.86148 0.92939 1.21485 1.01687 0.91730 1.00617 1.21280 0.95158 0.96378 0.96419 1.21088 0.96450 0.98988 1.01138 1.21306 0.98675 0.90620 0.97066 1.20984 1.01090 0.96408 1.08047 1.85711 1.50541 1.45212 1.15971 0.92462 0.92973 0.93574 0.74728 0.83297 0.85372 0.85631 0.85022 0.95943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.39 13.96 55.43 0.77 -26.61 15 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 15 3 Si 0.87 20.52 27.47 -169.99 -4.67 15.85 15 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 5 H -0.28 -6.68 7.11 56.52 0.40 -6.27 15 6 H -0.26 -5.74 6.54 56.52 0.37 -5.37 15 7 C -0.52 -14.82 9.48 -34.44 -0.33 -15.15 15 8 H 0.09 3.01 7.00 -52.48 -0.37 2.64 15 9 C -0.03 -0.61 4.53 -29.04 -0.13 -0.75 15 10 C 0.52 11.15 7.67 -10.99 -0.08 11.07 15 11 O -0.51 -12.55 12.88 5.54 0.07 -12.47 15 12 N -0.69 -11.67 5.02 -9.71 -0.05 -11.72 15 13 C 0.21 3.38 6.32 -83.43 -0.53 2.85 15 14 C -0.13 -2.13 8.71 -39.42 -0.34 -2.48 15 15 C -0.07 -0.93 10.04 -39.55 -0.40 -1.32 15 16 C -0.16 -1.71 10.04 -39.57 -0.40 -2.11 15 17 C -0.06 -0.65 9.79 -39.39 -0.39 -1.04 15 18 C -0.15 -2.09 6.12 -38.90 -0.24 -2.32 15 19 S -0.13 -1.63 24.66 -107.50 -2.65 -4.28 15 20 H 0.27 7.54 8.31 -40.82 -0.34 7.20 15 21 H 0.05 1.12 7.20 -51.93 -0.37 0.75 15 22 H 0.05 0.99 7.57 -51.93 -0.39 0.60 15 23 H 0.41 6.00 7.97 -40.82 -0.33 5.67 15 24 H 0.15 2.69 6.19 -52.49 -0.32 2.37 15 25 H 0.13 1.30 8.06 -52.49 -0.42 0.87 15 26 H 0.13 1.01 8.06 -52.49 -0.42 0.59 15 27 H 0.13 1.22 8.06 -52.49 -0.42 0.79 15 28 H 0.08 0.96 9.07 97.61 0.89 1.85 15 LS Contribution 260.37 15.07 3.92 3.92 Total: -1.00 -32.04 260.37 -6.86 -38.90 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -1.33 Total: 5.73 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -2.93 Total: -9.31 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.72 Total: -38.34 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.07 Total: -12.47 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.67 Total: 15.85 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.65 Total: -4.28 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.04 -6.86 -38.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198627.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.788 kcal (2) G-P(sol) polarization free energy of solvation -32.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds