Wall clock time and date at job start Sun Mar 29 2020 22:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 120.00024 * 2 1 4 4 H 1.48505 * 109.46885 * 269.99487 * 3 2 1 5 5 H 1.48501 * 109.47127 * 29.99632 * 3 2 1 6 6 H 1.48496 * 109.47066 * 149.99564 * 3 2 1 7 7 C 1.37877 * 120.00256 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99536 * 0.02562 * 7 2 1 9 9 C 1.50690 * 120.00128 * 180.02562 * 7 2 1 10 10 C 1.50706 * 109.47257 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99629 * 0.02562 * 10 9 7 12 12 N 1.34770 * 120.00171 * 180.02562 * 10 9 7 13 13 C 1.40140 * 120.00040 * 184.48522 * 12 10 9 14 14 C 1.38653 * 120.09755 * 325.30839 * 13 12 10 15 15 C 1.38251 * 120.00933 * 179.97438 * 14 13 12 16 16 C 1.38303 * 120.20976 * 0.02562 * 15 14 13 17 17 C 1.38197 * 120.19810 * 359.97438 * 16 15 14 18 18 C 1.38785 * 119.98872 * 0.02562 * 17 16 15 19 19 S 1.76204 * 120.10175 * 180.02562 * 18 17 16 20 20 H 0.97002 * 120.00030 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47233 * 60.00741 * 9 7 2 22 22 H 1.09001 * 109.47833 * 300.00498 * 9 7 2 23 23 H 0.96997 * 120.00460 * 4.48415 * 12 10 9 24 24 H 1.08002 * 119.99688 * 0.25078 * 14 13 12 25 25 H 1.07998 * 119.89741 * 179.97438 * 15 14 13 26 26 H 1.07995 * 119.89836 * 179.97438 * 16 15 14 27 27 H 1.08001 * 120.00157 * 180.02562 * 17 16 15 28 28 H 1.34494 * 103.00039 * 90.00222 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0139 -2.6148 0.0010 11 8 3.2257 -3.5368 0.0000 12 7 5.3389 -2.8611 0.0020 13 6 5.8068 -4.1786 -0.0930 14 6 5.0991 -5.2124 0.5010 15 6 5.5621 -6.5116 0.4057 16 6 6.7311 -6.7851 -0.2808 17 6 7.4434 -5.7614 -0.8762 18 6 6.9861 -4.4541 -0.7856 19 16 7.8916 -3.1466 -1.5442 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8912 22 1 3.8753 -0.6803 -0.8888 23 1 5.9687 -2.1264 0.0684 24 1 4.1836 -5.0033 1.0345 25 1 5.0096 -7.3153 0.8694 26 1 7.0884 -7.8018 -0.3518 27 1 8.3557 -5.9786 -1.4118 28 1 7.3594 -3.0861 -2.7779 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143198627.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:44 Heat of formation + Delta-G solvation = -29.367795 kcal Electronic energy + Delta-G solvation = -14012.986407 eV Core-core repulsion = 11540.315737 eV Total energy + Delta-G solvation = -2472.670670 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.47850 -39.39346 -35.80028 -35.07598 -32.20298 -31.99514 -30.21892 -25.76267 -24.13054 -23.31669 -21.28896 -19.39589 -19.11329 -18.32946 -17.62511 -16.95904 -16.52085 -16.31879 -15.61596 -15.39715 -14.94181 -14.69054 -14.21929 -14.12393 -13.47286 -12.93704 -12.85047 -12.60700 -12.44804 -11.88519 -11.85555 -11.58150 -11.39546 -10.81503 -10.67031 -9.92707 -9.23274 -9.19780 -8.29092 -6.38558 -0.12308 0.32069 0.66770 1.39354 1.42620 1.53139 1.68123 1.76910 2.11527 2.36316 2.75025 3.04359 3.85132 3.98023 4.18026 4.36119 4.43860 4.50725 4.65316 4.89004 4.97486 5.17464 5.26521 5.42470 5.44396 5.51816 5.94027 6.18364 6.49446 6.77129 7.16977 7.29188 8.88078 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.035357 B = 0.006449 C = 0.005571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.730531 B = 4340.903278 C = 5025.088923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.958 3.042 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.227 1.227 7 C -0.536 4.536 8 H 0.031 0.969 9 C -0.025 4.025 10 C 0.521 3.479 11 O -0.555 6.555 12 N -0.669 5.669 13 C 0.175 3.825 14 C -0.160 4.160 15 C -0.074 4.074 16 C -0.139 4.139 17 C -0.051 4.051 18 C -0.158 4.158 19 S -0.111 6.111 20 H 0.269 0.731 21 H 0.077 0.923 22 H 0.071 0.929 23 H 0.427 0.573 24 H 0.115 0.885 25 H 0.150 0.850 26 H 0.167 0.833 27 H 0.165 0.835 28 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.502 -8.303 -1.084 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.779 3.221 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.150 1.150 7 C -0.574 4.574 8 H 0.050 0.950 9 C -0.065 4.065 10 C 0.312 3.688 11 O -0.432 6.432 12 N -0.316 5.316 13 C 0.077 3.923 14 C -0.182 4.182 15 C -0.093 4.093 16 C -0.159 4.159 17 C -0.071 4.071 18 C -0.272 4.272 19 S 0.046 5.954 20 H 0.078 0.922 21 H 0.095 0.905 22 H 0.089 0.911 23 H 0.267 0.733 24 H 0.133 0.867 25 H 0.168 0.832 26 H 0.184 0.816 27 H 0.182 0.818 28 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 20.341 -8.044 -1.299 21.912 hybrid contribution -1.453 0.303 -0.447 1.550 sum 18.888 -7.741 -1.746 20.487 Atomic orbital electron populations 1.70081 1.08762 1.28498 1.51765 1.26104 0.95772 1.03820 0.93564 0.85575 0.79985 0.76937 0.79594 1.18810 1.21076 1.14986 1.21113 0.90621 0.93878 1.51820 0.95020 1.19627 0.96069 0.89753 1.01043 1.21503 0.80959 0.93184 0.73168 1.90577 1.56496 1.47572 1.48541 1.43933 1.07651 1.07394 1.72667 1.18187 0.93589 0.85324 0.95209 1.21399 1.01200 0.93716 1.01926 1.21573 0.96004 0.95367 0.96337 1.21558 0.94869 1.00839 0.98646 1.21779 0.99463 0.89611 0.96289 1.21203 1.00251 0.98107 1.07670 1.85634 1.49394 1.44913 1.15477 0.92223 0.90482 0.91068 0.73255 0.86694 0.83225 0.81554 0.81788 0.96257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.65 13.96 21.45 0.30 -60.35 15 2 C 0.00 0.25 5.47 84.66 0.46 0.71 15 3 Si 0.96 41.69 27.47 68.60 1.88 43.57 15 4 H -0.26 -10.93 7.11 99.48 0.71 -10.22 15 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 15 6 H -0.23 -8.48 6.54 99.48 0.65 -7.83 15 7 C -0.54 -31.94 9.48 25.60 0.24 -31.70 15 8 H 0.03 2.21 7.00 -2.91 -0.02 2.19 15 9 C -0.03 -1.15 4.53 29.10 0.13 -1.02 15 10 C 0.52 22.91 7.67 87.66 0.67 23.58 15 11 O -0.56 -29.20 12.88 -3.08 -0.04 -29.24 15 12 N -0.67 -22.53 5.02 -303.01 -1.52 -24.05 15 13 C 0.18 5.59 6.32 38.22 0.24 5.83 15 14 C -0.16 -5.24 8.71 22.37 0.19 -5.04 15 15 C -0.07 -1.75 10.04 22.29 0.22 -1.53 15 16 C -0.14 -2.52 10.04 22.28 0.22 -2.29 15 17 C -0.05 -0.99 9.79 22.39 0.22 -0.77 15 18 C -0.16 -4.02 6.12 22.71 0.14 -3.88 15 19 S -0.11 -2.46 24.66 -56.49 -1.39 -3.85 15 20 H 0.27 15.80 8.31 -92.71 -0.77 15.03 15 21 H 0.08 3.13 7.20 -2.39 -0.02 3.11 15 22 H 0.07 2.90 7.57 -2.39 -0.02 2.88 15 23 H 0.43 11.69 7.97 -92.71 -0.74 10.95 15 24 H 0.12 4.51 6.19 -2.91 -0.02 4.49 15 25 H 0.15 2.77 8.06 -2.91 -0.02 2.75 15 26 H 0.17 1.72 8.06 -2.91 -0.02 1.70 15 27 H 0.16 2.17 8.06 -2.91 -0.02 2.15 15 28 H 0.07 1.67 9.07 73.35 0.67 2.33 15 Total: -1.00 -75.24 260.37 3.06 -72.18 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 1.08 Total: 17.86 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: 2.75 Total: -16.12 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -1.22 Total: -84.40 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.04 Total: -29.24 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 1.88 Total: 43.57 kcal Atomic # 16 Polarization: -2.46 SS G_CDS: -1.39 Total: -3.85 kcal Total: -75.24 3.06 -72.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198627.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.817 kcal (2) G-P(sol) polarization free energy of solvation -75.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds