Wall clock time and date at job start Sun Mar 29 2020 22:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99969 * 2 1 4 4 H 1.48494 * 109.47163 * 269.99840 * 3 2 1 5 5 H 1.48505 * 109.47236 * 29.99909 * 3 2 1 6 6 H 1.48503 * 109.46947 * 149.99593 * 3 2 1 7 7 C 1.37872 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00467 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99732 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.47125 * 179.97438 * 9 7 2 11 11 O 1.21281 * 119.99655 * 359.97438 * 10 9 7 12 12 N 1.34774 * 120.00271 * 180.02562 * 10 9 7 13 13 C 1.46497 * 120.00344 * 184.65184 * 12 10 9 14 14 C 1.53006 * 115.54604 * 293.75132 * 13 12 10 15 15 F 1.39893 * 109.47272 * 65.77415 * 14 13 12 16 16 F 1.39905 * 109.46803 * 185.77560 * 14 13 12 17 17 F 1.39896 * 109.46801 * 305.77021 * 14 13 12 18 18 C 1.52996 * 117.50323 * 148.07761 * 13 12 10 19 19 C 1.53002 * 117.49891 * 79.41654 * 13 12 10 20 20 H 0.97003 * 119.99945 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47399 * 59.99604 * 9 7 2 22 22 H 1.09000 * 109.47244 * 299.99512 * 9 7 2 23 23 H 0.97000 * 119.99674 * 4.92099 * 12 10 9 24 24 H 1.09001 * 117.49345 * 0.02562 * 18 13 12 25 25 H 1.08994 * 117.50019 * 145.02271 * 18 13 12 26 26 H 1.09000 * 117.49571 * 214.98256 * 19 13 12 27 27 H 1.09004 * 117.49717 * 0.02562 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 8 3.4226 -3.4230 0.0001 12 7 1.7810 -4.9153 0.0000 13 6 2.7290 -6.0275 0.1029 14 6 3.6747 -6.2006 -1.0873 15 9 4.5326 -5.0984 -1.1655 16 9 4.4284 -7.3671 -0.9182 17 9 2.9278 -6.2948 -2.2665 18 6 2.2573 -7.2937 0.8205 19 6 3.2727 -6.3660 1.4924 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5570 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 0.8303 -5.0935 -0.0724 24 1 1.2415 -7.2994 1.2157 25 1 2.6210 -8.2501 0.4450 26 1 4.3041 -6.7125 1.5585 27 1 2.9248 -5.7615 2.3300 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143205206.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:15 Heat of formation + Delta-G solvation = -167.241970 kcal Electronic energy + Delta-G solvation = -17349.943350 eV Core-core repulsion = 13886.684396 eV Total energy + Delta-G solvation = -3463.258954 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.80348 -47.43545 -47.12629 -39.24224 -36.94222 -32.96319 -32.39595 -28.87535 -26.66655 -23.87759 -22.82442 -21.16916 -19.75497 -18.33586 -17.97531 -17.64534 -16.30947 -16.07919 -15.32288 -14.52625 -14.33191 -14.20159 -14.10166 -13.89902 -13.74520 -13.35449 -13.27798 -12.95054 -12.19461 -12.11861 -11.74749 -11.43111 -10.98638 -10.84020 -10.71725 -10.61767 -9.98311 -9.31198 -8.80509 -8.76336 -8.45526 -6.08730 -4.08504 2.76882 3.16504 3.34245 3.38738 3.40743 3.48886 3.58083 3.92389 4.27226 4.40478 4.46439 4.86902 4.91064 5.18165 5.29988 5.35132 5.69428 5.87458 6.15747 6.73292 7.10235 7.25919 7.87173 7.95258 8.31254 9.02272 9.08045 9.56795 11.03589 Molecular weight = 237.07amu Principal moments of inertia in cm(-1) A = 0.042906 B = 0.006675 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.432343 B = 4193.659300 C = 4386.169402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.902 3.098 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.509 4.509 8 H 0.076 0.924 9 C 0.010 3.990 10 C 0.510 3.490 11 O -0.516 6.516 12 N -0.710 5.710 13 C 0.035 3.965 14 C 0.478 3.522 15 F -0.153 7.153 16 F -0.187 7.187 17 F -0.182 7.182 18 C -0.148 4.148 19 C -0.144 4.144 20 H 0.262 0.738 21 H 0.049 0.951 22 H 0.050 0.950 23 H 0.406 0.594 24 H 0.116 0.884 25 H 0.113 0.887 26 H 0.109 0.891 27 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.273 -15.276 1.219 15.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.730 3.270 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.547 4.547 8 H 0.094 0.906 9 C -0.029 4.029 10 C 0.300 3.700 11 O -0.388 6.388 12 N -0.366 5.366 13 C -0.056 4.056 14 C 0.422 3.578 15 F -0.134 7.134 16 F -0.169 7.169 17 F -0.164 7.164 18 C -0.186 4.186 19 C -0.182 4.182 20 H 0.071 0.929 21 H 0.067 0.933 22 H 0.068 0.932 23 H 0.242 0.758 24 H 0.134 0.866 25 H 0.131 0.869 26 H 0.127 0.873 27 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.023 -14.921 1.206 15.272 hybrid contribution -0.011 0.760 -0.366 0.843 sum 3.012 -14.161 0.840 14.502 Atomic orbital electron populations 1.69957 1.06051 1.26996 1.51034 1.24999 0.94916 0.99516 0.95111 0.86410 0.79838 0.82524 0.78219 1.20578 1.21267 1.19626 1.21153 0.94304 0.88957 1.50329 0.90576 1.19239 0.93972 0.90031 0.99657 1.22356 0.91669 0.82817 0.73170 1.90623 1.17556 1.83949 1.46692 1.45800 1.08572 1.03717 1.78485 1.21161 0.97958 0.94274 0.92243 1.19831 0.80425 0.73912 0.83647 1.93343 1.71197 1.52480 1.96351 1.93126 1.78060 1.50206 1.95508 1.93162 1.76584 1.95922 1.50685 1.23439 1.01486 0.92749 1.00885 1.23432 0.99941 1.00975 0.93844 0.92856 0.93308 0.93195 0.75756 0.86609 0.86855 0.87266 0.86662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.17 13.29 55.43 0.74 -25.43 15 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 15 3 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 15 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 15 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 15 7 C -0.51 -14.62 8.92 -34.44 -0.31 -14.93 15 8 H 0.08 2.29 6.75 -52.49 -0.35 1.93 15 9 C 0.01 0.25 5.46 -29.03 -0.16 0.10 15 10 C 0.51 11.31 7.71 -10.98 -0.08 11.22 15 11 O -0.52 -13.10 12.79 5.56 0.07 -13.02 15 12 N -0.71 -11.83 5.42 -47.61 -0.26 -12.08 15 13 C 0.03 0.51 1.97 -131.82 -0.26 0.25 15 14 C 0.48 7.84 3.16 37.16 0.12 7.96 15 15 F -0.15 -3.09 14.51 2.25 0.03 -3.06 15 16 F -0.19 -2.65 15.90 2.25 0.04 -2.61 15 17 F -0.18 -3.04 17.29 2.25 0.04 -3.00 15 18 C -0.15 -1.47 9.88 -26.70 -0.26 -1.73 15 19 C -0.14 -1.76 9.92 -26.69 -0.26 -2.03 15 20 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 21 H 0.05 1.23 8.14 -51.93 -0.42 0.81 15 22 H 0.05 1.24 8.14 -51.93 -0.42 0.81 15 23 H 0.41 5.55 8.83 -40.82 -0.36 5.19 15 24 H 0.12 0.93 8.14 -51.93 -0.42 0.51 15 25 H 0.11 0.95 7.61 -51.93 -0.40 0.56 15 26 H 0.11 1.24 7.95 -51.93 -0.41 0.83 15 27 H 0.12 1.43 8.14 -51.93 -0.42 1.01 15 LS Contribution 254.57 15.07 3.84 3.84 Total: -1.00 -32.34 254.57 -4.20 -36.54 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -2.35 Total: -0.56 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -1.32 Total: 2.32 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.48 Total: -37.51 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.07 Total: -13.02 kcal Atomic # 9 Polarization: -8.78 SS G_CDS: 0.11 Total: -8.67 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -32.34 -4.20 -36.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205206.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.702 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds