Wall clock time and date at job start Sun Mar 29 2020 22:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99969 * 2 1 4 4 H 1.48494 * 109.47163 * 269.99840 * 3 2 1 5 5 H 1.48505 * 109.47236 * 29.99909 * 3 2 1 6 6 H 1.48503 * 109.46947 * 149.99593 * 3 2 1 7 7 C 1.37872 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00467 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99732 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.47125 * 179.97438 * 9 7 2 11 11 O 1.21281 * 119.99655 * 359.97438 * 10 9 7 12 12 N 1.34774 * 120.00271 * 180.02562 * 10 9 7 13 13 C 1.46497 * 120.00344 * 184.65184 * 12 10 9 14 14 C 1.53006 * 115.54604 * 293.75132 * 13 12 10 15 15 F 1.39893 * 109.47272 * 65.77415 * 14 13 12 16 16 F 1.39905 * 109.46803 * 185.77560 * 14 13 12 17 17 F 1.39896 * 109.46801 * 305.77021 * 14 13 12 18 18 C 1.52996 * 117.50323 * 148.07761 * 13 12 10 19 19 C 1.53002 * 117.49891 * 79.41654 * 13 12 10 20 20 H 0.97003 * 119.99945 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47399 * 59.99604 * 9 7 2 22 22 H 1.09000 * 109.47244 * 299.99512 * 9 7 2 23 23 H 0.97000 * 119.99674 * 4.92099 * 12 10 9 24 24 H 1.09001 * 117.49345 * 0.02562 * 18 13 12 25 25 H 1.08994 * 117.50019 * 145.02271 * 18 13 12 26 26 H 1.09000 * 117.49571 * 214.98256 * 19 13 12 27 27 H 1.09004 * 117.49717 * 0.02562 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 8 3.4226 -3.4230 0.0001 12 7 1.7810 -4.9153 0.0000 13 6 2.7290 -6.0275 0.1029 14 6 3.6747 -6.2006 -1.0873 15 9 4.5326 -5.0984 -1.1655 16 9 4.4284 -7.3671 -0.9182 17 9 2.9278 -6.2948 -2.2665 18 6 2.2573 -7.2937 0.8205 19 6 3.2727 -6.3660 1.4924 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5570 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 0.8303 -5.0935 -0.0724 24 1 1.2415 -7.2994 1.2157 25 1 2.6210 -8.2501 0.4450 26 1 4.3041 -6.7125 1.5585 27 1 2.9248 -5.7615 2.3300 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143205206.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:15 Heat of formation + Delta-G solvation = -189.700878 kcal Electronic energy + Delta-G solvation = -17350.917241 eV Core-core repulsion = 13886.684396 eV Total energy + Delta-G solvation = -3464.232845 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -51.08326 -48.66935 -48.51359 -40.73849 -38.28437 -35.10031 -33.88511 -30.85555 -27.91490 -25.87911 -23.74805 -22.55016 -21.27161 -19.62488 -19.28426 -18.97248 -18.37589 -17.70557 -16.67129 -16.40549 -15.87124 -15.59595 -15.40797 -15.11401 -15.02418 -14.75526 -14.71712 -14.58822 -14.18636 -13.47264 -13.24921 -12.78464 -12.62062 -12.56246 -12.11456 -12.04434 -11.82233 -11.45855 -10.63156 -10.54416 -10.21549 -8.26113 -6.32867 1.40117 1.40746 1.50121 1.53916 1.84816 2.01525 2.30180 2.43618 2.74222 3.06694 3.10461 3.35629 3.66300 3.80321 4.23018 4.49182 4.58905 4.83767 5.03594 5.06234 5.24728 5.37715 5.72367 6.02588 6.60203 6.80985 7.32018 7.44611 8.85917 Molecular weight = 237.07amu Principal moments of inertia in cm(-1) A = 0.042906 B = 0.006675 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.432343 B = 4193.659300 C = 4386.169402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.012 3.988 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.055 0.945 9 C 0.012 3.988 10 C 0.515 3.485 11 O -0.553 6.553 12 N -0.689 5.689 13 C -0.004 4.004 14 C 0.473 3.527 15 F -0.182 7.182 16 F -0.173 7.173 17 F -0.187 7.187 18 C -0.100 4.100 19 C -0.148 4.148 20 H 0.267 0.733 21 H 0.042 0.958 22 H 0.049 0.951 23 H 0.422 0.578 24 H 0.143 0.857 25 H 0.137 0.863 26 H 0.117 0.883 27 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.859 -16.525 1.793 16.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.187 4.187 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.073 0.927 9 C -0.027 4.027 10 C 0.304 3.696 11 O -0.429 6.429 12 N -0.345 5.345 13 C -0.095 4.095 14 C 0.417 3.583 15 F -0.163 7.163 16 F -0.154 7.154 17 F -0.169 7.169 18 C -0.137 4.137 19 C -0.186 4.186 20 H 0.076 0.924 21 H 0.060 0.940 22 H 0.067 0.933 23 H 0.261 0.739 24 H 0.161 0.839 25 H 0.155 0.845 26 H 0.135 0.865 27 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.569 -16.220 1.780 16.518 hybrid contribution 0.109 1.051 -0.551 1.192 sum 2.678 -15.169 1.228 15.453 Atomic orbital electron populations 1.70021 1.07042 1.28090 1.51171 1.25741 0.95823 1.02605 0.94506 0.85486 0.78533 0.78791 0.78471 1.19934 1.19784 1.19922 1.21360 0.93678 0.91229 1.51178 0.92718 1.19058 0.94131 0.90397 0.99115 1.21721 0.90361 0.84238 0.73277 1.90608 1.18656 1.84942 1.48731 1.45281 1.09867 1.02757 1.76552 1.21461 0.99088 0.96114 0.92839 1.20114 0.80476 0.73561 0.84143 1.93285 1.72263 1.54236 1.96532 1.93144 1.77794 1.49072 1.95429 1.93147 1.76584 1.95910 1.51232 1.23721 1.02258 0.91262 0.96461 1.23559 1.01397 1.01696 0.91926 0.92373 0.94041 0.93322 0.73923 0.83864 0.84495 0.86523 0.86975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.61 13.29 21.45 0.28 -53.32 15 2 C 0.01 0.69 5.46 84.65 0.46 1.15 15 3 Si 0.96 45.41 29.54 68.60 2.03 47.44 15 4 H -0.27 -12.59 7.11 99.48 0.71 -11.89 15 5 H -0.27 -12.18 7.11 99.48 0.71 -11.48 15 6 H -0.27 -12.97 7.11 99.48 0.71 -12.26 15 7 C -0.54 -31.44 8.92 25.60 0.23 -31.21 15 8 H 0.05 3.39 6.75 -2.91 -0.02 3.37 15 9 C 0.01 0.63 5.46 29.10 0.16 0.79 15 10 C 0.51 23.03 7.71 87.66 0.68 23.70 15 11 O -0.55 -28.73 12.79 -3.03 -0.04 -28.77 15 12 N -0.69 -22.17 5.42 -422.92 -2.29 -24.47 15 13 C 0.00 -0.12 1.97 3.61 0.01 -0.11 15 14 C 0.47 15.01 3.16 71.98 0.23 15.24 15 15 F -0.18 -7.46 14.51 44.97 0.65 -6.81 15 16 F -0.17 -4.55 15.90 44.97 0.72 -3.83 15 17 F -0.19 -6.09 17.29 44.97 0.78 -5.31 15 18 C -0.10 -1.56 9.88 30.62 0.30 -1.26 15 19 C -0.15 -3.25 9.92 30.62 0.30 -2.95 15 20 H 0.27 14.57 8.31 -92.71 -0.77 13.80 15 21 H 0.04 2.13 8.14 -2.39 -0.02 2.11 15 22 H 0.05 2.44 8.14 -2.39 -0.02 2.42 15 23 H 0.42 10.75 8.83 -92.71 -0.82 9.93 15 24 H 0.14 1.52 8.14 -2.39 -0.02 1.50 15 25 H 0.14 1.58 7.61 -2.39 -0.02 1.57 15 26 H 0.12 2.38 7.95 -2.39 -0.02 2.36 15 27 H 0.11 2.56 8.14 -2.38 -0.02 2.54 15 Total: -1.00 -70.64 254.57 4.89 -65.75 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: 0.40 Total: 3.97 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 2.37 Total: 5.35 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -2.01 Total: -77.79 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.04 Total: -28.77 kcal Atomic # 9 Polarization: -18.09 SS G_CDS: 2.15 Total: -15.95 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -70.64 4.89 -65.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205206.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.950 kcal (2) G-P(sol) polarization free energy of solvation -70.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds