Wall clock time and date at job start Sun Mar 29 2020 21:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47317 * 2 1 4 4 C 1.46503 * 119.99679 * 270.00129 * 3 2 1 5 5 C 1.38529 * 120.00103 * 89.99549 * 3 2 1 6 6 C 1.39725 * 120.48777 * 4.98071 * 5 3 2 7 7 C 1.38148 * 118.48861 * 180.02562 * 6 5 3 8 8 C 1.50702 * 120.35570 * 179.97438 * 7 6 5 9 9 N 1.32474 * 119.29220 * 359.75024 * 7 6 5 10 10 C 1.32508 * 120.93213 * 0.50913 * 9 7 6 11 11 N 1.38429 * 119.17739 * 179.75997 * 10 9 7 12 12 C 1.36989 * 119.99587 * 359.72566 * 11 10 9 13 13 H 1.08002 * 120.00512 * 0.02562 * 12 11 10 14 14 C 1.38840 * 119.99674 * 179.72388 * 12 11 10 15 15 N 1.31544 * 119.99778 * 0.27510 * 14 12 11 16 16 Si 1.86794 * 119.99780 * 180.27693 * 14 12 11 17 17 H 1.48498 * 109.47176 * 90.00166 * 16 14 12 18 18 H 1.48501 * 109.46931 * 210.00038 * 16 14 12 19 19 H 1.48503 * 109.47412 * 329.99732 * 16 14 12 20 20 N 1.32520 * 121.64785 * 359.47647 * 10 9 7 21 21 H 1.08996 * 109.46930 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47078 * 300.00537 * 1 2 3 23 23 H 1.09002 * 109.46882 * 60.00177 * 1 2 3 24 24 H 1.08998 * 109.47528 * 239.99347 * 2 1 3 25 25 H 1.09002 * 109.46882 * 119.99823 * 2 1 3 26 26 H 1.08998 * 109.46482 * 269.99570 * 4 3 2 27 27 H 1.08996 * 109.47371 * 29.99772 * 4 3 2 28 28 H 1.08993 * 109.46810 * 150.00036 * 4 3 2 29 29 H 1.08001 * 120.76063 * 359.97438 * 6 5 3 30 30 H 1.09003 * 109.47233 * 89.99727 * 8 7 6 31 31 H 1.08999 * 109.47194 * 209.99999 * 8 7 6 32 32 H 1.09002 * 109.46901 * 330.00335 * 8 7 6 33 33 H 0.97000 * 119.99919 * 179.72403 * 11 10 9 34 34 H 0.97000 * 119.99166 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 2.2492 2.0343 1.1997 6 6 2.1196 1.3543 2.4134 7 6 2.3590 2.0459 3.5851 8 6 2.2308 1.3540 4.9177 9 7 2.7069 3.3227 3.5245 10 6 2.8175 3.9440 2.3593 11 7 3.1785 5.2802 2.3386 12 6 3.4109 5.9452 3.5135 13 1 3.3129 5.4268 4.4560 14 6 3.7786 7.2838 3.4925 15 7 3.8984 7.9150 2.3447 16 14 4.1030 8.1885 5.0943 17 1 5.5374 8.0569 5.4554 18 1 3.7638 9.6248 4.9290 19 1 3.2655 7.6030 6.1719 20 7 2.5967 3.3167 1.2131 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.2920 1.9005 -1.5833 27 1 1.5818 1.6877 -2.0284 28 1 2.0956 3.1409 -1.1384 29 1 1.8378 0.3119 2.4352 30 1 3.1909 0.9186 5.1949 31 1 1.9275 2.0770 5.6748 32 1 1.4814 0.5656 4.8471 33 1 3.2670 5.7457 1.4922 34 1 4.1549 8.8504 2.3301 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155531146.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:27 Heat of formation + Delta-G solvation = 59.373920 kcal Electronic energy + Delta-G solvation = -16535.973762 eV Core-core repulsion = 13890.242858 eV Total energy + Delta-G solvation = -2645.730904 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.73798 -37.01361 -35.11474 -33.05008 -31.81756 -30.36964 -29.52019 -27.81036 -25.40404 -24.84723 -23.15134 -21.25254 -20.14106 -17.92104 -16.77399 -16.22393 -15.54006 -14.88673 -14.38262 -14.24711 -13.92841 -13.65506 -13.38840 -13.29688 -12.49555 -12.41757 -12.24791 -11.92038 -11.69289 -11.55105 -11.46403 -11.24539 -10.96384 -10.50670 -10.45284 -10.28671 -9.62629 -9.45372 -8.82586 -7.80470 -7.68867 -6.96450 -6.50084 -3.72436 2.40081 2.64192 3.22720 3.23517 3.28209 3.38324 4.09957 4.74728 4.83988 5.03000 5.26218 5.31294 5.42962 5.44106 5.52431 5.74043 5.78319 5.89032 5.93374 6.09383 6.13518 6.14379 6.27240 6.31119 6.41363 6.47547 6.82410 7.21288 7.42522 7.54593 7.78227 8.16667 8.56322 8.76967 9.19331 9.40487 10.03568 10.66966 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.032981 B = 0.006435 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.773741 B = 4349.849151 C = 5065.351065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.128 3.872 3 N -0.614 5.614 4 C 0.103 3.897 5 C 0.477 3.523 6 C -0.409 4.409 7 C 0.235 3.765 8 C -0.095 4.095 9 N -0.600 5.600 10 C 0.537 3.463 11 N -0.508 5.508 12 C -0.278 4.278 13 H 0.115 0.885 14 C 0.016 3.984 15 N -0.893 5.893 16 Si 0.939 3.061 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.267 1.267 20 N -0.651 5.651 21 H 0.060 0.940 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.040 0.960 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.409 0.591 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.196 -12.927 -2.621 13.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.004 3.996 3 N -0.331 5.331 4 C -0.040 4.040 5 C 0.231 3.769 6 C -0.443 4.443 7 C 0.083 3.917 8 C -0.153 4.153 9 N -0.329 5.329 10 C 0.181 3.819 11 N -0.120 5.120 12 C -0.410 4.410 13 H 0.132 0.868 14 C -0.187 4.187 15 N -0.532 5.532 16 Si 0.765 3.235 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.192 1.192 20 N -0.388 5.388 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.133 0.867 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.246 0.754 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.798 -11.480 -2.656 12.380 hybrid contribution -0.032 -0.133 0.113 0.177 sum -3.831 -11.612 -2.544 12.490 Atomic orbital electron populations 1.22227 0.96733 1.01439 1.02578 1.21311 0.93735 0.82165 1.02400 1.46086 1.71222 1.12733 1.03090 1.21433 0.99209 0.99116 0.84253 1.17881 0.86313 0.87545 0.85149 1.21002 1.29335 1.01628 0.92335 1.20779 0.87562 0.89067 0.94265 1.20589 1.01785 0.99389 0.93534 1.67699 1.27436 1.09908 1.27836 1.18704 0.92676 0.87288 0.83257 1.40487 1.58055 1.03386 1.10070 1.19959 1.41633 0.92673 0.86690 0.86774 1.25398 0.97533 0.96785 0.99000 1.69699 1.46468 1.11864 1.25123 0.85716 0.78827 0.78142 0.80808 1.20295 1.20870 1.19169 1.67091 1.32476 1.09035 1.30218 0.92116 0.92089 0.92820 0.91230 0.90370 0.94178 0.92841 0.90240 0.86671 0.91032 0.90935 0.91526 0.75431 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 10.24 37.16 0.38 -1.50 16 2 C 0.13 1.54 5.99 -4.04 -0.02 1.52 16 3 N -0.61 -10.06 2.98 -181.55 -0.54 -10.60 16 4 C 0.10 1.52 10.51 59.85 0.63 2.15 16 5 C 0.48 9.83 7.39 -154.86 -1.14 8.68 16 6 C -0.41 -7.87 9.00 -39.06 -0.35 -8.22 16 7 C 0.23 4.85 6.81 -82.35 -0.56 4.28 16 8 C -0.10 -1.47 10.21 36.01 0.37 -1.11 16 9 N -0.60 -14.87 9.03 -10.21 -0.09 -14.96 16 10 C 0.54 13.96 8.38 -322.72 -2.70 11.26 16 11 N -0.51 -13.89 5.43 -12.79 -0.07 -13.96 16 12 C -0.28 -7.72 9.69 -15.02 -0.15 -7.87 16 13 H 0.11 3.19 7.04 -52.49 -0.37 2.82 16 14 C 0.02 0.43 5.50 -17.45 -0.10 0.34 16 15 N -0.89 -24.78 13.05 55.49 0.72 -24.06 16 16 Si 0.94 20.84 29.55 -169.99 -5.02 15.81 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 20 N -0.65 -15.59 9.25 -13.13 -0.12 -15.71 16 21 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 25 H 0.08 0.93 6.04 -51.93 -0.31 0.61 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.62 8.07 -51.93 -0.42 0.20 16 28 H 0.08 1.36 7.33 -51.93 -0.38 0.98 16 29 H 0.12 1.85 6.15 -52.49 -0.32 1.52 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 33 H 0.41 11.33 8.01 -40.82 -0.33 11.00 16 34 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 290.30 15.07 4.37 4.37 Total: -1.00 -30.72 290.30 -9.04 -39.76 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -4.64 Total: 9.79 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: -3.65 Total: 9.55 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -0.10 Total: -79.28 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.72 -9.04 -39.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155531146.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.133 kcal (2) G-P(sol) polarization free energy of solvation -30.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds