Wall clock time and date at job start Sun Mar 29 2020 21:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47317 * 2 1 4 4 C 1.46503 * 119.99679 * 270.00129 * 3 2 1 5 5 C 1.38529 * 120.00103 * 89.99549 * 3 2 1 6 6 C 1.39725 * 120.48777 * 4.98071 * 5 3 2 7 7 C 1.38148 * 118.48861 * 180.02562 * 6 5 3 8 8 C 1.50702 * 120.35570 * 179.97438 * 7 6 5 9 9 N 1.32474 * 119.29220 * 359.75024 * 7 6 5 10 10 C 1.32508 * 120.93213 * 0.50913 * 9 7 6 11 11 N 1.38429 * 119.17739 * 179.75997 * 10 9 7 12 12 C 1.36989 * 119.99587 * 359.72566 * 11 10 9 13 13 H 1.08002 * 120.00512 * 0.02562 * 12 11 10 14 14 C 1.38840 * 119.99674 * 179.72388 * 12 11 10 15 15 N 1.31544 * 119.99778 * 0.27510 * 14 12 11 16 16 Si 1.86794 * 119.99780 * 180.27693 * 14 12 11 17 17 H 1.48498 * 109.47176 * 90.00166 * 16 14 12 18 18 H 1.48501 * 109.46931 * 210.00038 * 16 14 12 19 19 H 1.48503 * 109.47412 * 329.99732 * 16 14 12 20 20 N 1.32520 * 121.64785 * 359.47647 * 10 9 7 21 21 H 1.08996 * 109.46930 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47078 * 300.00537 * 1 2 3 23 23 H 1.09002 * 109.46882 * 60.00177 * 1 2 3 24 24 H 1.08998 * 109.47528 * 239.99347 * 2 1 3 25 25 H 1.09002 * 109.46882 * 119.99823 * 2 1 3 26 26 H 1.08998 * 109.46482 * 269.99570 * 4 3 2 27 27 H 1.08996 * 109.47371 * 29.99772 * 4 3 2 28 28 H 1.08993 * 109.46810 * 150.00036 * 4 3 2 29 29 H 1.08001 * 120.76063 * 359.97438 * 6 5 3 30 30 H 1.09003 * 109.47233 * 89.99727 * 8 7 6 31 31 H 1.08999 * 109.47194 * 209.99999 * 8 7 6 32 32 H 1.09002 * 109.46901 * 330.00335 * 8 7 6 33 33 H 0.97000 * 119.99919 * 179.72403 * 11 10 9 34 34 H 0.97000 * 119.99166 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 2.2492 2.0343 1.1997 6 6 2.1196 1.3543 2.4134 7 6 2.3590 2.0459 3.5851 8 6 2.2308 1.3540 4.9177 9 7 2.7069 3.3227 3.5245 10 6 2.8175 3.9440 2.3593 11 7 3.1785 5.2802 2.3386 12 6 3.4109 5.9452 3.5135 13 1 3.3129 5.4268 4.4560 14 6 3.7786 7.2838 3.4925 15 7 3.8984 7.9150 2.3447 16 14 4.1030 8.1885 5.0943 17 1 5.5374 8.0569 5.4554 18 1 3.7638 9.6248 4.9290 19 1 3.2655 7.6030 6.1719 20 7 2.5967 3.3167 1.2131 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.2920 1.9005 -1.5833 27 1 1.5818 1.6877 -2.0284 28 1 2.0956 3.1409 -1.1384 29 1 1.8378 0.3119 2.4352 30 1 3.1909 0.9186 5.1949 31 1 1.9275 2.0770 5.6748 32 1 1.4814 0.5656 4.8471 33 1 3.2670 5.7457 1.4922 34 1 4.1549 8.8504 2.3301 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155531146.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:27 Heat of formation + Delta-G solvation = 41.978644 kcal Electronic energy + Delta-G solvation = -16536.728078 eV Core-core repulsion = 13890.242858 eV Total energy + Delta-G solvation = -2646.485219 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.43634 -38.44471 -36.90158 -34.69217 -33.57677 -31.57615 -31.20084 -29.26748 -26.92522 -26.53951 -24.45617 -22.95593 -21.58312 -19.75667 -18.39055 -17.91339 -17.10533 -16.29867 -16.17338 -15.75186 -15.50438 -15.27264 -14.92670 -14.43664 -13.86636 -13.77498 -13.45532 -13.31472 -13.05552 -12.98498 -12.82620 -12.63784 -12.40037 -12.19324 -12.07895 -11.91190 -11.30985 -11.10333 -10.65276 -9.57934 -9.40333 -8.54020 -8.46385 -5.78971 0.70086 0.95825 1.42347 1.50345 1.57354 2.02586 2.31647 2.95210 2.96298 3.56228 3.76670 4.06720 4.24467 4.37640 4.48887 4.50564 4.56465 4.72980 4.74759 4.84606 4.91044 4.96257 4.99213 5.05056 5.14320 5.24793 5.39712 5.42539 5.70830 5.93458 6.07553 6.56459 6.77651 6.90645 7.28778 7.47541 8.16804 8.72721 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.032981 B = 0.006435 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.773741 B = 4349.849151 C = 5065.351065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.119 3.881 3 N -0.610 5.610 4 C 0.101 3.899 5 C 0.459 3.541 6 C -0.390 4.390 7 C 0.214 3.786 8 C -0.090 4.090 9 N -0.636 5.636 10 C 0.533 3.467 11 N -0.538 5.538 12 C -0.300 4.300 13 H 0.104 0.896 14 C -0.031 4.031 15 N -0.932 5.932 16 Si 1.007 2.993 17 H -0.271 1.271 18 H -0.277 1.277 19 H -0.263 1.263 20 N -0.674 5.674 21 H 0.091 0.909 22 H 0.036 0.964 23 H 0.052 0.948 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.046 0.954 27 H 0.091 0.909 28 H 0.048 0.952 29 H 0.156 0.844 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.399 0.601 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.962 -15.985 -2.418 16.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.003 4.003 3 N -0.326 5.326 4 C -0.042 4.042 5 C 0.213 3.787 6 C -0.422 4.422 7 C 0.067 3.933 8 C -0.147 4.147 9 N -0.366 5.366 10 C 0.176 3.824 11 N -0.153 5.153 12 C -0.431 4.431 13 H 0.122 0.878 14 C -0.229 4.229 15 N -0.572 5.572 16 Si 0.830 3.170 17 H -0.197 1.197 18 H -0.202 1.202 19 H -0.187 1.187 20 N -0.413 5.413 21 H 0.110 0.890 22 H 0.056 0.944 23 H 0.071 0.929 24 H 0.120 0.880 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.110 0.890 28 H 0.067 0.933 29 H 0.174 0.826 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.234 0.766 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.609 -14.693 -2.473 15.597 hybrid contribution 0.090 0.418 -0.117 0.443 sum -4.519 -14.276 -2.590 15.196 Atomic orbital electron populations 1.22170 0.95658 1.03116 1.01373 1.21702 0.94499 0.79709 1.04354 1.46504 1.69847 1.14126 1.02080 1.21519 1.00653 0.97535 0.84508 1.18440 0.85865 0.86890 0.87524 1.21478 1.26278 1.03180 0.91310 1.21744 0.86333 0.88077 0.97193 1.20708 1.03886 0.99700 0.90386 1.67766 1.29240 1.12085 1.27547 1.19057 0.91713 0.87222 0.84416 1.40441 1.61344 1.04187 1.09349 1.20005 1.43065 0.93402 0.86585 0.87830 1.26287 0.97183 0.97070 1.02399 1.69806 1.48276 1.12130 1.27016 0.84705 0.78749 0.76857 0.76678 1.19663 1.20165 1.18702 1.67138 1.33464 1.10919 1.29736 0.88980 0.94434 0.92915 0.88032 0.89681 0.93583 0.89026 0.93347 0.82642 0.89238 0.91523 0.87907 0.76649 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 10.24 71.98 0.74 -2.22 16 2 C 0.12 2.36 5.99 86.38 0.52 2.88 16 3 N -0.61 -18.49 2.98 -728.29 -2.17 -20.66 16 4 C 0.10 2.80 10.51 127.77 1.34 4.15 16 5 C 0.46 18.36 7.39 133.23 0.98 19.34 16 6 C -0.39 -14.02 9.00 22.61 0.20 -13.82 16 7 C 0.21 8.53 6.81 42.44 0.29 8.82 16 8 C -0.09 -2.51 10.21 71.24 0.73 -1.78 16 9 N -0.64 -32.01 9.03 -186.21 -1.68 -33.69 16 10 C 0.53 28.71 8.38 261.46 2.19 30.91 16 11 N -0.54 -31.12 5.43 -194.37 -1.05 -32.18 16 12 C -0.30 -17.46 9.69 84.03 0.81 -16.65 16 13 H 0.10 6.06 7.04 -2.91 -0.02 6.04 16 14 C -0.03 -1.70 5.50 84.88 0.47 -1.24 16 15 N -0.93 -53.98 13.05 21.65 0.28 -53.70 16 16 Si 1.01 43.91 29.55 68.60 2.03 45.94 16 17 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 18 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 19 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 20 N -0.67 -32.98 9.25 -195.46 -1.81 -34.78 16 21 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.10 1.46 8.07 -2.39 -0.02 1.44 16 25 H 0.08 1.59 6.04 -2.39 -0.01 1.58 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.09 1.84 8.07 -2.39 -0.02 1.82 16 28 H 0.05 1.66 7.33 -2.39 -0.02 1.64 16 29 H 0.16 4.25 6.15 -2.91 -0.02 4.23 16 30 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.10 2.12 8.09 -2.39 -0.02 2.11 16 33 H 0.40 23.68 8.01 -92.71 -0.74 22.94 16 34 H 0.28 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -70.78 290.30 4.24 -66.55 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: 0.36 Total: 32.14 kcal Atomic # 6 Polarization: 22.11 SS G_CDS: 8.27 Total: 30.39 kcal Atomic # 7 Polarization: -168.58 SS G_CDS: -6.43 Total: -175.01 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -70.78 4.24 -66.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155531146.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.525 kcal (2) G-P(sol) polarization free energy of solvation -70.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds