Wall clock time and date at job start Sun Mar 29 2020 22:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38323 * 120.80988 * 2 1 4 4 C 1.38591 * 119.50122 * 179.75610 * 3 2 1 5 5 Cl 1.73600 * 119.39529 * 180.27735 * 4 3 2 6 6 N 1.31936 * 121.20153 * 0.53622 * 4 3 2 7 7 C 1.32441 * 121.76118 * 359.74096 * 6 4 3 8 8 N 1.38279 * 119.82318 * 180.02562 * 7 6 4 9 9 C 1.36886 * 120.00169 * 359.97438 * 8 7 6 10 10 H 1.08006 * 119.99705 * 0.02562 * 9 8 7 11 11 C 1.38853 * 120.00268 * 179.97438 * 9 8 7 12 12 N 1.31527 * 119.99815 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00093 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46908 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47132 * 120.00096 * 13 11 9 16 16 H 1.48503 * 109.47123 * 240.00281 * 13 11 9 17 17 C 1.39994 * 120.80767 * 180.28383 * 2 1 3 18 18 C 1.43197 * 120.59969 * 359.97438 * 17 2 1 19 19 N 3.49489 * 81.57766 * 180.28233 * 2 1 3 20 20 H 1.09002 * 109.47152 * 269.71703 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.71804 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.71785 * 1 2 3 23 23 H 1.07998 * 120.24534 * 0.02562 * 3 2 1 24 24 H 0.96999 * 120.00019 * 179.97438 * 8 7 6 25 25 H 0.97002 * 120.00122 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2155 1.1880 0.0000 4 6 3.6010 1.1564 0.0051 5 17 4.4874 2.6490 0.0124 6 7 4.2586 0.0126 -0.0005 7 6 3.6298 -1.1530 -0.0062 8 7 4.3592 -2.3278 -0.0115 9 6 5.7273 -2.2841 -0.0114 10 1 6.2371 -1.3320 -0.0067 11 6 6.4597 -3.4638 -0.0161 12 7 5.8388 -4.6233 -0.0213 13 14 8.3267 -3.4040 -0.0152 14 1 8.7766 -1.9889 -0.0084 15 1 8.8434 -4.0931 1.1945 16 1 8.8443 -4.0827 -1.2305 17 6 2.2240 -1.2024 -0.0060 18 6 1.5387 -2.4597 -0.0116 19 7 0.9951 -3.4572 -0.0170 20 1 -0.3633 -0.0051 1.0277 21 1 -0.3633 -0.8875 -0.5182 22 1 -0.3633 0.8925 -0.5095 23 1 1.6928 2.1331 0.0004 24 1 3.9013 -3.1830 -0.0153 25 1 6.3504 -5.4474 -0.0250 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155531514.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:53 Heat of formation + Delta-G solvation = 47.532393 kcal Electronic energy + Delta-G solvation = -13758.117102 eV Core-core repulsion = 11183.197025 eV Total energy + Delta-G solvation = -2574.920077 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.036 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.61916 -36.41712 -35.80163 -35.53405 -33.15824 -32.14779 -29.14506 -27.56798 -25.08350 -23.36118 -20.96330 -18.71287 -17.76924 -16.91990 -15.92454 -14.97686 -14.44657 -14.36250 -13.78770 -13.28574 -12.93671 -12.62620 -12.49022 -12.23809 -11.92099 -11.91044 -11.88434 -11.36257 -11.23182 -10.78574 -10.69623 -10.52992 -10.23029 -9.11906 -8.78594 -8.73658 -7.38364 -6.96681 -4.11328 1.38598 2.08310 2.37160 3.01018 3.03475 3.10719 3.39061 3.67930 3.79070 4.40829 4.51393 4.77819 4.93068 5.16178 5.46490 5.78475 5.83311 5.90214 6.11025 6.23164 6.43338 6.84494 7.00700 7.09008 7.46868 8.20742 8.25123 8.52334 8.82233 9.21643 10.16358 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.020052 B = 0.009403 C = 0.006424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.026197 B = 2976.961964 C = 4357.842671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.077 3.923 3 C -0.299 4.299 4 C 0.276 3.724 5 Cl -0.060 7.060 6 N -0.533 5.533 7 C 0.380 3.620 8 N -0.488 5.488 9 C -0.285 4.285 10 H 0.127 0.873 11 C 0.023 3.977 12 N -0.867 5.867 13 Si 0.945 3.055 14 H -0.259 1.259 15 H -0.275 1.275 16 H -0.275 1.275 17 C -0.222 4.222 18 C 0.276 3.724 19 N -0.467 5.467 20 H 0.077 0.923 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.129 0.871 24 H 0.412 0.588 25 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.538 9.425 0.083 10.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.067 3.933 3 C -0.327 4.327 4 C 0.097 3.903 5 Cl -0.031 7.031 6 N -0.253 5.253 7 C 0.131 3.869 8 N -0.086 5.086 9 C -0.416 4.416 10 H 0.144 0.856 11 C -0.185 4.185 12 N -0.500 5.500 13 Si 0.770 3.230 14 H -0.182 1.182 15 H -0.201 1.201 16 H -0.201 1.201 17 C -0.237 4.237 18 C -0.035 4.035 19 N -0.146 5.146 20 H 0.096 0.904 21 H 0.084 0.916 22 H 0.093 0.907 23 H 0.147 0.853 24 H 0.249 0.751 25 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.995 7.444 0.071 8.024 hybrid contribution 0.220 -0.004 0.010 0.220 sum -2.775 7.440 0.080 7.941 Atomic orbital electron populations 1.20840 0.90837 1.02934 1.02772 1.19589 0.94946 0.90492 0.88241 1.20545 0.91583 0.97952 1.22627 1.21166 0.88024 0.86953 0.94143 1.98350 1.78106 1.30275 1.96409 1.66220 1.39618 0.95957 1.23489 1.17326 0.85287 0.85718 0.98559 1.41200 1.07100 1.04383 1.55908 1.20347 0.80171 0.95882 1.45160 0.85582 1.25687 1.02652 0.94316 0.95825 1.69684 1.38183 0.98281 1.43822 0.85541 0.79653 0.79540 0.78313 1.18249 1.20068 1.20061 1.15618 0.90875 0.87038 1.30200 1.25421 0.93184 0.92547 0.92366 1.81155 1.09092 1.10583 1.13801 0.90405 0.91577 0.90687 0.85283 0.75089 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 9.68 36.01 0.35 -1.15 15 2 C 0.08 1.28 5.95 -103.93 -0.62 0.66 15 3 C -0.30 -4.82 9.55 -39.42 -0.38 -5.20 15 4 C 0.28 5.09 7.27 -17.38 -0.13 4.96 15 5 Cl -0.06 -0.94 29.10 -51.86 -1.51 -2.45 15 6 N -0.53 -11.55 9.04 -9.26 -0.08 -11.63 15 7 C 0.38 8.47 7.44 -155.10 -1.15 7.32 15 8 N -0.49 -11.88 5.33 -10.94 -0.06 -11.93 15 9 C -0.28 -7.11 9.70 -15.07 -0.15 -7.25 15 10 H 0.13 3.15 7.07 -52.48 -0.37 2.77 15 11 C 0.02 0.55 5.50 -17.45 -0.10 0.46 15 12 N -0.87 -22.17 13.05 55.49 0.72 -21.44 15 13 Si 0.94 18.93 29.55 -169.99 -5.02 13.91 15 14 H -0.26 -5.10 7.11 56.52 0.40 -4.70 15 15 H -0.28 -5.47 7.11 56.52 0.40 -5.07 15 16 H -0.28 -5.47 7.11 56.52 0.40 -5.06 15 17 C -0.22 -4.41 5.78 -106.40 -0.61 -5.02 15 18 C 0.28 5.68 12.72 -22.48 -0.29 5.39 15 19 N -0.47 -10.08 18.54 41.84 0.78 -9.30 15 20 H 0.08 0.90 8.14 -51.93 -0.42 0.47 15 21 H 0.07 0.89 7.19 -51.93 -0.37 0.52 15 22 H 0.07 0.77 8.10 -51.93 -0.42 0.35 15 23 H 0.13 1.70 8.06 -52.49 -0.42 1.27 15 24 H 0.41 10.32 6.73 -40.82 -0.27 10.05 15 25 H 0.28 6.77 8.31 -40.82 -0.34 6.44 15 LS Contribution 253.12 15.07 3.81 3.81 Total: -1.00 -25.97 253.12 -5.85 -31.82 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -1.42 Total: 7.04 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -3.07 Total: 0.17 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 1.36 Total: -54.31 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.91 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.51 Total: -2.45 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -25.97 -5.85 -31.82 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155531514.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.354 kcal (2) G-P(sol) polarization free energy of solvation -25.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds