Wall clock time and date at job start Sun Mar 29 2020 21:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47125 * 2 1 4 4 C 1.46498 * 119.99995 * 270.00044 * 3 2 1 5 5 C 1.52997 * 109.47085 * 269.99840 * 4 3 2 6 6 C 1.38976 * 120.00045 * 89.99934 * 3 2 1 7 7 C 1.39287 * 120.03872 * 5.02334 * 6 3 2 8 8 N 1.32049 * 120.08333 * 179.97438 * 7 6 3 9 9 C 1.32065 * 120.17926 * 359.70362 * 8 7 6 10 10 C 1.39201 * 120.07421 * 0.57162 * 9 8 7 11 11 N 1.38811 * 120.04537 * 179.70681 * 10 9 8 12 12 C 1.36898 * 119.99485 * 359.44876 * 11 10 9 13 13 H 1.08001 * 120.00461 * 0.27591 * 12 11 10 14 14 C 1.38825 * 119.99715 * 180.27636 * 12 11 10 15 15 N 1.31564 * 119.99892 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99650 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47292 * 90.00256 * 16 14 12 18 18 H 1.48504 * 109.46709 * 209.99798 * 16 14 12 19 19 H 1.48496 * 109.47395 * 329.99808 * 16 14 12 20 20 N 1.32661 * 120.04034 * 185.00156 * 6 3 2 21 21 H 1.09003 * 109.47156 * 60.00069 * 1 2 3 22 22 H 1.08996 * 109.47008 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47057 * 300.00122 * 1 2 3 24 24 H 1.09000 * 109.47057 * 239.99878 * 2 1 3 25 25 H 1.09003 * 109.47156 * 119.99931 * 2 1 3 26 26 H 1.09002 * 109.47245 * 30.00117 * 4 3 2 27 27 H 1.08999 * 109.47537 * 150.00015 * 4 3 2 28 28 H 1.09004 * 109.47538 * 180.02562 * 5 4 3 29 29 H 1.08998 * 109.47523 * 299.99778 * 5 4 3 30 30 H 1.09000 * 109.47464 * 60.00047 * 5 4 3 31 31 H 1.07995 * 119.95290 * 359.95204 * 7 6 3 32 32 H 1.08004 * 119.96407 * 180.30400 * 9 8 7 33 33 H 0.97001 * 120.00514 * 179.73151 * 11 10 9 34 34 H 0.96999 * 119.99774 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7104 6 6 2.2500 2.0364 1.2036 7 6 2.1190 1.3491 2.4080 8 7 2.3393 1.9706 3.5520 9 6 2.6902 3.2438 3.5591 10 6 2.8176 3.9389 2.3598 11 7 3.1806 5.2787 2.3683 12 6 3.4025 5.9202 3.5571 13 1 3.2996 5.3827 4.4883 14 6 3.7599 7.2616 3.5659 15 7 3.8849 7.9164 2.4316 16 14 4.0634 8.1367 5.1881 17 1 5.4957 8.0088 5.5591 18 1 3.7147 9.5734 5.0482 19 1 3.2213 7.5236 6.2464 20 7 2.5965 3.3169 1.2067 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.5817 1.6877 -2.0284 27 1 2.0955 3.1410 -1.1384 28 1 3.8894 2.3456 -2.6541 29 1 4.3883 2.2156 -0.9508 30 1 3.8745 0.7622 -1.8407 31 1 1.8365 0.3068 2.4061 32 1 2.8744 3.7474 4.4966 33 1 3.2730 5.7615 1.5320 34 1 4.1349 8.8536 2.4377 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534623.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:34 Heat of formation + Delta-G solvation = 54.611608 kcal Electronic energy + Delta-G solvation = -16558.024591 eV Core-core repulsion = 13912.087178 eV Total energy + Delta-G solvation = -2645.937413 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.78779 -37.18594 -35.34516 -32.90279 -31.90191 -31.67801 -29.31720 -27.27159 -25.14016 -23.76616 -23.18285 -21.82822 -20.15388 -18.08392 -17.05311 -16.33587 -15.49048 -15.30841 -14.95278 -14.27098 -14.03459 -13.62202 -13.44100 -13.40479 -12.94279 -12.35785 -12.12548 -11.78779 -11.58244 -11.48052 -11.43845 -10.88945 -10.75548 -10.74157 -10.48496 -10.37237 -10.16749 -10.06625 -9.11308 -7.90297 -7.77487 -6.70128 -6.65067 -3.91898 2.37867 2.62245 3.12444 3.13018 3.16720 3.36839 3.94876 4.73530 4.80802 5.08653 5.23682 5.26819 5.34439 5.46767 5.61152 5.67817 5.70192 5.81118 5.83869 5.93515 6.01540 6.16749 6.24583 6.30232 6.50661 6.55206 6.62692 7.17788 7.35142 7.44457 7.59709 8.06401 8.49923 8.76079 9.10045 9.20685 9.59753 10.45698 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.037242 B = 0.006029 C = 0.005424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.656513 B = 4642.789233 C = 5161.374909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.127 3.873 3 N -0.611 5.611 4 C 0.127 3.873 5 C -0.164 4.164 6 C 0.415 3.585 7 C -0.159 4.159 8 N -0.380 5.380 9 C -0.088 4.088 10 C 0.353 3.647 11 N -0.515 5.515 12 C -0.303 4.303 13 H 0.108 0.892 14 C 0.026 3.974 15 N -0.881 5.881 16 Si 0.938 3.062 17 H -0.274 1.274 18 H -0.280 1.280 19 H -0.265 1.265 20 N -0.595 5.595 21 H 0.053 0.947 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.136 0.864 32 H 0.150 0.850 33 H 0.403 0.597 34 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.940 -9.864 -5.407 11.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.004 3.996 3 N -0.328 5.328 4 C 0.004 3.996 5 C -0.223 4.223 6 C 0.173 3.827 7 C -0.324 4.324 8 N -0.092 5.092 9 C -0.263 4.263 10 C 0.105 3.895 11 N -0.121 5.121 12 C -0.434 4.434 13 H 0.126 0.874 14 C -0.179 4.179 15 N -0.517 5.517 16 Si 0.763 3.237 17 H -0.200 1.200 18 H -0.206 1.206 19 H -0.190 1.190 20 N -0.331 5.331 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.153 0.847 32 H 0.167 0.833 33 H 0.239 0.761 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.840 -9.469 -5.372 11.251 hybrid contribution 0.223 0.792 0.172 0.840 sum -2.617 -8.677 -5.200 10.449 Atomic orbital electron populations 1.22236 0.96759 1.01461 1.02554 1.21307 0.93688 0.82279 1.02368 1.46312 1.71243 1.12601 1.02637 1.21198 0.95169 0.98896 0.84362 1.22136 0.98261 1.00777 1.01103 1.18782 0.89358 0.88435 0.86120 1.21953 1.22431 1.00604 0.87406 1.67739 1.04090 1.08859 1.28497 1.22335 1.14961 0.91488 0.97486 1.18837 0.94531 0.86802 0.89297 1.40815 1.57158 1.04396 1.09736 1.19807 1.44264 0.93388 0.85935 0.87403 1.25396 0.96637 0.96534 0.99335 1.69700 1.44606 1.11266 1.26082 0.85728 0.79062 0.78407 0.80456 1.19969 1.20564 1.18957 1.67146 1.29124 1.08475 1.28368 0.92811 0.92118 0.92108 0.91204 0.90444 0.92176 0.89711 0.92428 0.92223 0.93441 0.84689 0.83281 0.76115 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 10.24 37.16 0.38 -1.52 16 2 C 0.13 1.54 5.98 -4.04 -0.02 1.52 16 3 N -0.61 -9.78 2.59 -173.72 -0.45 -10.23 16 4 C 0.13 1.85 6.20 -4.04 -0.03 1.83 16 5 C -0.16 -2.22 10.24 37.16 0.38 -1.84 16 6 C 0.41 8.43 7.37 -154.77 -1.14 7.29 16 7 C -0.16 -3.25 10.42 -17.07 -0.18 -3.43 16 8 N -0.38 -8.59 10.48 -12.65 -0.13 -8.72 16 9 C -0.09 -2.09 10.48 -17.09 -0.18 -2.26 16 10 C 0.35 8.63 7.63 -154.78 -1.18 7.45 16 11 N -0.52 -13.10 5.44 -11.08 -0.06 -13.16 16 12 C -0.30 -7.71 9.55 -15.07 -0.14 -7.85 16 13 H 0.11 2.61 5.66 -52.49 -0.30 2.31 16 14 C 0.03 0.66 5.50 -17.45 -0.10 0.57 16 15 N -0.88 -23.12 13.05 55.49 0.72 -22.40 16 16 Si 0.94 19.33 29.55 -169.99 -5.02 14.31 16 17 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 18 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 20 N -0.60 -13.66 9.28 -11.42 -0.11 -13.77 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 25 H 0.08 0.93 5.99 -51.93 -0.31 0.62 16 26 H 0.06 0.71 8.07 -51.93 -0.42 0.30 16 27 H 0.08 1.44 7.32 -51.93 -0.38 1.06 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.14 2.36 6.02 -52.49 -0.32 2.04 16 32 H 0.15 3.41 5.94 -52.48 -0.31 3.10 16 33 H 0.40 10.57 8.02 -40.82 -0.33 10.25 16 34 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 287.57 15.07 4.33 4.33 Total: -1.00 -27.94 287.57 -7.37 -35.31 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -4.45 Total: 12.59 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -2.21 Total: 1.74 kcal Atomic # 7 Polarization: -68.25 SS G_CDS: -0.02 Total: -68.28 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.94 -7.37 -35.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534623.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.922 kcal (2) G-P(sol) polarization free energy of solvation -27.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds