Wall clock time and date at job start Sun Mar 29 2020 21:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47125 * 2 1 4 4 C 1.46498 * 119.99995 * 270.00044 * 3 2 1 5 5 C 1.52997 * 109.47085 * 269.99840 * 4 3 2 6 6 C 1.38976 * 120.00045 * 89.99934 * 3 2 1 7 7 C 1.39287 * 120.03872 * 5.02334 * 6 3 2 8 8 N 1.32049 * 120.08333 * 179.97438 * 7 6 3 9 9 C 1.32065 * 120.17926 * 359.70362 * 8 7 6 10 10 C 1.39201 * 120.07421 * 0.57162 * 9 8 7 11 11 N 1.38811 * 120.04537 * 179.70681 * 10 9 8 12 12 C 1.36898 * 119.99485 * 359.44876 * 11 10 9 13 13 H 1.08001 * 120.00461 * 0.27591 * 12 11 10 14 14 C 1.38825 * 119.99715 * 180.27636 * 12 11 10 15 15 N 1.31564 * 119.99892 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99650 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47292 * 90.00256 * 16 14 12 18 18 H 1.48504 * 109.46709 * 209.99798 * 16 14 12 19 19 H 1.48496 * 109.47395 * 329.99808 * 16 14 12 20 20 N 1.32661 * 120.04034 * 185.00156 * 6 3 2 21 21 H 1.09003 * 109.47156 * 60.00069 * 1 2 3 22 22 H 1.08996 * 109.47008 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47057 * 300.00122 * 1 2 3 24 24 H 1.09000 * 109.47057 * 239.99878 * 2 1 3 25 25 H 1.09003 * 109.47156 * 119.99931 * 2 1 3 26 26 H 1.09002 * 109.47245 * 30.00117 * 4 3 2 27 27 H 1.08999 * 109.47537 * 150.00015 * 4 3 2 28 28 H 1.09004 * 109.47538 * 180.02562 * 5 4 3 29 29 H 1.08998 * 109.47523 * 299.99778 * 5 4 3 30 30 H 1.09000 * 109.47464 * 60.00047 * 5 4 3 31 31 H 1.07995 * 119.95290 * 359.95204 * 7 6 3 32 32 H 1.08004 * 119.96407 * 180.30400 * 9 8 7 33 33 H 0.97001 * 120.00514 * 179.73151 * 11 10 9 34 34 H 0.96999 * 119.99774 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7104 6 6 2.2500 2.0364 1.2036 7 6 2.1190 1.3491 2.4080 8 7 2.3393 1.9706 3.5520 9 6 2.6902 3.2438 3.5591 10 6 2.8176 3.9389 2.3598 11 7 3.1806 5.2787 2.3683 12 6 3.4025 5.9202 3.5571 13 1 3.2996 5.3827 4.4883 14 6 3.7599 7.2616 3.5659 15 7 3.8849 7.9164 2.4316 16 14 4.0634 8.1367 5.1881 17 1 5.4957 8.0088 5.5591 18 1 3.7147 9.5734 5.0482 19 1 3.2213 7.5236 6.2464 20 7 2.5965 3.3169 1.2067 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.5817 1.6877 -2.0284 27 1 2.0955 3.1410 -1.1384 28 1 3.8894 2.3456 -2.6541 29 1 4.3883 2.2156 -0.9508 30 1 3.8745 0.7622 -1.8407 31 1 1.8365 0.3068 2.4061 32 1 2.8744 3.7474 4.4966 33 1 3.2730 5.7615 1.5320 34 1 4.1349 8.8536 2.4377 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534623.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:34 Heat of formation + Delta-G solvation = 38.070406 kcal Electronic energy + Delta-G solvation = -16558.741871 eV Core-core repulsion = 13912.087178 eV Total energy + Delta-G solvation = -2646.654693 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.49139 -38.60636 -37.09670 -34.62577 -33.52265 -32.94388 -30.78854 -28.76285 -26.98556 -25.22478 -24.49384 -23.39264 -21.56706 -19.89009 -18.62520 -17.96395 -17.09195 -16.93155 -16.40574 -15.95582 -15.59652 -15.31647 -14.69083 -14.58891 -14.21402 -13.74315 -13.38772 -13.26421 -13.20633 -12.80062 -12.56115 -12.45609 -12.30021 -12.12710 -12.08002 -11.82205 -11.77521 -11.63712 -10.87736 -9.65397 -9.45048 -8.56106 -8.26238 -5.86449 0.64208 0.85127 1.44001 1.51135 1.57764 2.01942 2.26772 2.90876 3.06302 3.45741 3.95465 4.02230 4.10792 4.23902 4.32914 4.37301 4.55970 4.56259 4.63274 4.77568 4.87901 4.90596 5.01897 5.03424 5.15560 5.28592 5.33711 5.43140 5.58554 5.82107 6.13262 6.48780 6.67688 6.99083 7.28089 7.35559 7.75695 8.61818 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.037242 B = 0.006029 C = 0.005424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.656513 B = 4642.789233 C = 5161.374909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.118 3.882 3 N -0.603 5.603 4 C 0.123 3.877 5 C -0.155 4.155 6 C 0.409 3.591 7 C -0.144 4.144 8 N -0.387 5.387 9 C -0.119 4.119 10 C 0.348 3.652 11 N -0.537 5.537 12 C -0.324 4.324 13 H 0.113 0.887 14 C -0.020 4.020 15 N -0.920 5.920 16 Si 1.006 2.994 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.257 1.257 20 N -0.611 5.611 21 H 0.055 0.945 22 H 0.090 0.910 23 H 0.035 0.965 24 H 0.104 0.896 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.022 0.978 30 H 0.068 0.932 31 H 0.172 0.828 32 H 0.148 0.852 33 H 0.393 0.607 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.587 -12.306 -6.145 14.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.004 4.004 3 N -0.318 5.318 4 C 0.000 4.000 5 C -0.214 4.214 6 C 0.166 3.834 7 C -0.311 4.311 8 N -0.099 5.099 9 C -0.290 4.290 10 C 0.101 3.899 11 N -0.144 5.144 12 C -0.453 4.453 13 H 0.130 0.870 14 C -0.220 4.220 15 N -0.558 5.558 16 Si 0.829 3.171 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.181 1.181 20 N -0.348 5.348 21 H 0.074 0.926 22 H 0.109 0.891 23 H 0.054 0.946 24 H 0.122 0.878 25 H 0.100 0.900 26 H 0.116 0.884 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.189 0.811 32 H 0.165 0.835 33 H 0.227 0.773 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.503 -11.960 -6.115 13.882 hybrid contribution 0.312 1.188 0.180 1.241 sum -3.190 -10.772 -5.936 12.706 Atomic orbital electron populations 1.22182 0.95710 1.03080 1.01416 1.21701 0.94444 0.79953 1.04306 1.46716 1.69627 1.13876 1.01590 1.21346 0.96818 0.97391 0.84484 1.22053 0.96441 1.02207 1.00705 1.19176 0.88352 0.87761 0.88152 1.22624 1.19715 1.01920 0.86878 1.67760 1.04143 1.08409 1.29603 1.22264 1.17373 0.92156 0.97238 1.19084 0.93952 0.86714 0.90124 1.40806 1.59488 1.04840 1.09250 1.20109 1.44994 0.94042 0.86195 0.86991 1.26316 0.96194 0.96865 1.02661 1.69806 1.46356 1.11564 1.28089 0.84712 0.78995 0.77025 0.76417 1.19503 1.20321 1.18090 1.67222 1.29657 1.09901 1.27992 0.92595 0.89142 0.94613 0.87785 0.90009 0.88368 0.92795 0.90600 0.95885 0.91252 0.81150 0.83509 0.77346 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 10.24 71.98 0.74 -2.27 16 2 C 0.12 2.33 5.98 86.38 0.52 2.85 16 3 N -0.60 -17.69 2.59 -703.54 -1.82 -19.51 16 4 C 0.12 3.28 6.20 86.38 0.54 3.81 16 5 C -0.16 -3.86 10.24 71.98 0.74 -3.12 16 6 C 0.41 16.16 7.37 133.03 0.98 17.14 16 7 C -0.14 -5.61 10.42 84.91 0.89 -4.72 16 8 N -0.39 -17.28 10.48 -193.94 -2.03 -19.31 16 9 C -0.12 -5.76 10.48 84.89 0.89 -4.87 16 10 C 0.35 17.53 7.63 133.00 1.01 18.54 16 11 N -0.54 -28.63 5.44 -188.98 -1.03 -29.66 16 12 C -0.32 -17.10 9.55 84.04 0.80 -16.30 16 13 H 0.11 5.63 5.66 -2.91 -0.02 5.62 16 14 C -0.02 -1.00 5.50 84.87 0.47 -0.53 16 15 N -0.92 -50.15 13.05 21.65 0.28 -49.87 16 16 Si 1.01 40.36 29.55 68.60 2.03 42.39 16 17 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 18 H -0.28 -10.92 7.11 99.48 0.71 -10.22 16 19 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 20 N -0.61 -28.46 9.28 -190.05 -1.76 -30.23 16 21 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 22 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.10 1.46 8.07 -2.39 -0.02 1.44 16 25 H 0.08 1.58 5.99 -2.39 -0.01 1.57 16 26 H 0.10 1.93 8.07 -2.39 -0.02 1.91 16 27 H 0.05 1.80 7.32 -2.39 -0.02 1.79 16 28 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 31 H 0.17 5.34 6.02 -2.91 -0.02 5.32 16 32 H 0.15 6.98 5.94 -2.91 -0.02 6.97 16 33 H 0.39 21.85 8.02 -92.71 -0.74 21.11 16 34 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -62.67 287.57 3.60 -59.07 By element: Atomic # 1 Polarization: 36.24 SS G_CDS: 0.37 Total: 36.61 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 7.56 Total: 10.51 kcal Atomic # 7 Polarization: -142.22 SS G_CDS: -6.36 Total: -148.58 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Total: -62.67 3.60 -59.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534623.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.138 kcal (2) G-P(sol) polarization free energy of solvation -62.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds