Wall clock time and date at job start Sun Mar 29 2020 21:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47002 * 2 1 4 4 N 1.46905 * 109.47044 * 119.99363 * 2 1 3 5 5 C 1.52995 * 109.47349 * 239.99673 * 2 1 3 6 6 C 1.53008 * 109.47093 * 175.00148 * 5 2 1 7 7 N 1.46498 * 109.47199 * 180.02562 * 6 5 2 8 8 C 1.38820 * 120.00060 * 179.97438 * 7 6 5 9 9 C 1.39965 * 119.97198 * 359.72515 * 8 7 6 10 10 N 1.32123 * 120.31987 * 179.75275 * 9 8 7 11 11 C 1.31929 * 120.27233 * 0.52053 * 10 9 8 12 12 C 1.40686 * 119.93231 * 359.73379 * 11 10 9 13 13 C 1.41277 * 120.15447 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99360 * 155.19609 * 13 12 11 15 15 C 1.40056 * 120.00287 * 335.20218 * 13 12 11 16 16 N 1.30727 * 119.99774 * 342.16759 * 15 13 12 17 17 Si 1.86797 * 119.99906 * 162.16622 * 15 13 12 18 18 H 1.48503 * 109.47023 * 94.66112 * 17 15 13 19 19 H 1.48502 * 109.47181 * 214.65752 * 17 15 13 20 20 H 1.48498 * 109.47358 * 334.66051 * 17 15 13 21 21 N 1.32243 * 119.97042 * 179.97438 * 8 7 6 22 22 H 1.09005 * 109.47002 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47518 * 300.00183 * 1 2 3 24 24 H 1.09002 * 109.46821 * 60.00697 * 1 2 3 25 25 H 1.00903 * 110.99697 * 60.00445 * 4 2 1 26 26 H 1.00893 * 111.00237 * 183.95532 * 4 2 1 27 27 H 1.08998 * 109.47145 * 55.00148 * 5 2 1 28 28 H 1.08994 * 109.47248 * 294.99910 * 5 2 1 29 29 H 1.08998 * 109.47125 * 59.99987 * 6 5 2 30 30 H 1.08994 * 109.46879 * 299.99988 * 6 5 2 31 31 H 0.97000 * 119.99850 * 359.97438 * 7 6 5 32 32 H 1.08000 * 119.83724 * 0.02562 * 9 8 7 33 33 H 1.08003 * 120.03522 * 179.75067 * 11 10 9 34 34 H 0.97003 * 120.00023 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1996 5 6 2.0401 -0.7213 -1.2491 6 6 3.5650 -0.6133 -1.3135 7 7 4.0533 -1.3034 -2.5099 8 6 5.4138 -1.3398 -2.7836 9 6 6.3179 -0.7119 -1.9191 10 7 7.6146 -0.7463 -2.1703 11 6 8.0678 -1.3644 -3.2442 12 6 7.1684 -1.9946 -4.1234 13 6 7.6486 -2.6574 -5.2750 14 1 7.0693 -3.4520 -5.7216 15 6 8.8757 -2.2839 -5.8375 16 7 9.4082 -1.1287 -5.5362 17 14 9.7513 -3.4367 -7.0180 18 1 9.3968 -3.0777 -8.4147 19 1 11.2196 -3.3133 -6.8327 20 1 9.3338 -4.8354 -6.7453 21 7 5.8540 -1.9633 -3.8635 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.6962 -1.6479 1.2229 26 1 3.0261 -0.6500 1.2560 27 1 1.6055 -0.2618 -2.1369 28 1 1.7518 -1.7715 -1.2055 29 1 3.9995 -1.0728 -0.4258 30 1 3.8533 0.4369 -1.3572 31 1 3.4260 -1.7350 -3.1109 32 1 5.9542 -0.2005 -1.0401 33 1 9.1282 -1.3867 -3.4479 34 1 10.2579 -0.8699 -5.9260 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159777795.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:57 Heat of formation + Delta-G solvation = 23.878731 kcal Electronic energy + Delta-G solvation = -16001.159111 eV Core-core repulsion = 13353.889020 eV Total energy + Delta-G solvation = -2647.270090 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.07940 -37.55545 -35.09023 -33.84045 -32.18255 -30.07794 -29.19399 -27.66246 -25.95077 -23.40079 -22.19131 -21.16193 -20.63572 -17.70486 -16.58355 -16.08248 -15.74285 -15.24637 -14.97292 -14.90105 -14.26856 -14.05322 -13.62782 -13.09991 -12.94037 -12.45041 -12.06174 -11.75432 -11.64610 -11.36586 -11.17392 -11.12385 -10.98050 -10.84164 -10.46509 -9.91880 -9.71603 -9.51162 -8.89237 -8.56848 -7.33189 -7.01007 -6.75014 -4.67131 2.60445 3.00647 3.02724 3.07788 3.16190 3.76621 3.87291 4.43626 4.52744 4.69987 4.87525 5.06214 5.28337 5.36486 5.51536 5.63421 5.73824 5.82724 5.95813 6.00237 6.08169 6.10884 6.24585 6.47121 6.86795 6.99051 7.00215 7.10118 7.28416 7.70445 7.83039 8.17462 8.26741 8.49631 8.72306 9.34949 9.81389 9.98422 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.061551 B = 0.004435 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.797272 B = 6312.378402 C = 6591.571350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.090 3.910 3 H 0.083 0.917 4 N -0.846 5.846 5 C -0.166 4.166 6 C 0.138 3.862 7 N -0.736 5.736 8 C 0.369 3.631 9 C -0.158 4.158 10 N -0.418 5.418 11 C -0.039 4.039 12 C 0.264 3.736 13 C -0.426 4.426 14 H 0.089 0.911 15 C 0.077 3.923 16 N -0.779 5.779 17 Si 0.923 3.077 18 H -0.268 1.268 19 H -0.272 1.272 20 H -0.257 1.257 21 N -0.585 5.585 22 H 0.052 0.948 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.339 0.661 26 H 0.344 0.656 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.392 0.608 32 H 0.121 0.879 33 H 0.156 0.844 34 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.927 0.178 5.478 11.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 H 0.101 0.899 4 N -0.376 5.376 5 C -0.206 4.206 6 C 0.013 3.987 7 N -0.373 5.373 8 C 0.129 3.871 9 C -0.317 4.317 10 N -0.130 5.130 11 C -0.210 4.210 12 C 0.136 3.864 13 C -0.460 4.460 14 H 0.107 0.893 15 C -0.145 4.145 16 N -0.404 5.404 17 Si 0.747 3.253 18 H -0.193 1.193 19 H -0.197 1.197 20 H -0.181 1.181 21 N -0.313 5.313 22 H 0.072 0.928 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.151 0.849 26 H 0.158 0.842 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.227 0.773 32 H 0.139 0.861 33 H 0.173 0.827 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.171 1.033 6.095 11.903 hybrid contribution 0.637 -1.115 -1.540 2.005 sum -9.534 -0.081 4.555 10.567 Atomic orbital electron populations 1.21789 0.94383 1.01938 1.02010 1.21385 0.95490 0.98348 0.87047 0.89868 1.58992 1.16797 1.21304 1.40499 1.22645 0.95600 1.01803 1.00557 1.21120 0.92710 0.96815 0.88099 1.44086 1.03888 1.62262 1.27095 1.19251 0.84815 0.91665 0.91380 1.21975 0.89824 1.15533 1.04399 1.67707 1.14322 1.12623 1.18340 1.23482 1.01103 1.04144 0.92256 1.19077 0.85889 0.88799 0.92683 1.19345 1.02159 1.15950 1.08512 0.89294 1.26033 0.96567 0.94881 0.97004 1.69772 1.16861 1.17655 1.36102 0.86050 0.78468 0.81135 0.79679 1.19287 1.19687 1.18087 1.68422 1.16628 1.27514 1.18776 0.92850 0.91888 0.92204 0.84908 0.84197 0.90807 0.91443 0.93110 0.92630 0.77348 0.86103 0.82738 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.49 37.16 0.35 -0.83 16 2 C 0.09 0.84 3.41 -67.71 -0.23 0.61 16 3 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 4 N -0.85 -7.99 9.18 -4.66 -0.04 -8.04 16 5 C -0.17 -1.75 4.97 -26.73 -0.13 -1.88 16 6 C 0.14 1.93 4.66 -4.04 -0.02 1.91 16 7 N -0.74 -13.54 5.72 -60.28 -0.34 -13.89 16 8 C 0.37 8.85 7.66 -155.02 -1.19 7.66 16 9 C -0.16 -3.85 10.50 -16.78 -0.18 -4.03 16 10 N -0.42 -11.22 10.47 -12.11 -0.13 -11.35 16 11 C -0.04 -1.07 9.88 -16.59 -0.16 -1.24 16 12 C 0.26 7.43 6.41 -84.83 -0.54 6.89 16 13 C -0.43 -11.39 9.28 -37.75 -0.35 -11.74 16 14 H 0.09 2.32 7.91 -52.48 -0.42 1.90 16 15 C 0.08 1.87 5.13 -17.34 -0.09 1.78 16 16 N -0.78 -19.62 10.97 55.55 0.61 -19.01 16 17 Si 0.92 17.94 29.60 -169.99 -5.03 12.91 16 18 H -0.27 -5.13 7.11 56.52 0.40 -4.72 16 19 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 20 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 21 N -0.59 -15.79 10.49 -10.14 -0.11 -15.90 16 22 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.34 2.91 9.00 -39.29 -0.35 2.55 16 26 H 0.34 3.29 7.55 -39.30 -0.30 3.00 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.70 6.67 -51.93 -0.35 0.35 16 30 H 0.06 0.81 7.92 -51.93 -0.41 0.39 16 31 H 0.39 6.83 8.60 -40.82 -0.35 6.47 16 32 H 0.12 2.58 6.70 -52.49 -0.35 2.22 16 33 H 0.16 4.29 6.17 -52.48 -0.32 3.97 16 34 H 0.29 6.46 8.29 -40.82 -0.34 6.12 16 LS Contribution 286.81 15.07 4.32 4.32 Total: -1.00 -29.89 286.81 -7.78 -37.68 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -4.52 Total: 14.14 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -2.54 Total: -0.86 kcal Atomic # 7 Polarization: -68.17 SS G_CDS: -0.01 Total: -68.19 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.89 -7.78 -37.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159777795.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.554 kcal (2) G-P(sol) polarization free energy of solvation -29.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds