Wall clock time and date at job start Sun Mar 29 2020 21:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47002 * 2 1 4 4 N 1.46905 * 109.47044 * 119.99363 * 2 1 3 5 5 C 1.52995 * 109.47349 * 239.99673 * 2 1 3 6 6 C 1.53008 * 109.47093 * 175.00148 * 5 2 1 7 7 N 1.46498 * 109.47199 * 180.02562 * 6 5 2 8 8 C 1.38820 * 120.00060 * 179.97438 * 7 6 5 9 9 C 1.39965 * 119.97198 * 359.72515 * 8 7 6 10 10 N 1.32123 * 120.31987 * 179.75275 * 9 8 7 11 11 C 1.31929 * 120.27233 * 0.52053 * 10 9 8 12 12 C 1.40686 * 119.93231 * 359.73379 * 11 10 9 13 13 C 1.41277 * 120.15447 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99360 * 155.19609 * 13 12 11 15 15 C 1.40056 * 120.00287 * 335.20218 * 13 12 11 16 16 N 1.30727 * 119.99774 * 342.16759 * 15 13 12 17 17 Si 1.86797 * 119.99906 * 162.16622 * 15 13 12 18 18 H 1.48503 * 109.47023 * 94.66112 * 17 15 13 19 19 H 1.48502 * 109.47181 * 214.65752 * 17 15 13 20 20 H 1.48498 * 109.47358 * 334.66051 * 17 15 13 21 21 N 1.32243 * 119.97042 * 179.97438 * 8 7 6 22 22 H 1.09005 * 109.47002 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47518 * 300.00183 * 1 2 3 24 24 H 1.09002 * 109.46821 * 60.00697 * 1 2 3 25 25 H 1.00903 * 110.99697 * 60.00445 * 4 2 1 26 26 H 1.00893 * 111.00237 * 183.95532 * 4 2 1 27 27 H 1.08998 * 109.47145 * 55.00148 * 5 2 1 28 28 H 1.08994 * 109.47248 * 294.99910 * 5 2 1 29 29 H 1.08998 * 109.47125 * 59.99987 * 6 5 2 30 30 H 1.08994 * 109.46879 * 299.99988 * 6 5 2 31 31 H 0.97000 * 119.99850 * 359.97438 * 7 6 5 32 32 H 1.08000 * 119.83724 * 0.02562 * 9 8 7 33 33 H 1.08003 * 120.03522 * 179.75067 * 11 10 9 34 34 H 0.97003 * 120.00023 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1996 5 6 2.0401 -0.7213 -1.2491 6 6 3.5650 -0.6133 -1.3135 7 7 4.0533 -1.3034 -2.5099 8 6 5.4138 -1.3398 -2.7836 9 6 6.3179 -0.7119 -1.9191 10 7 7.6146 -0.7463 -2.1703 11 6 8.0678 -1.3644 -3.2442 12 6 7.1684 -1.9946 -4.1234 13 6 7.6486 -2.6574 -5.2750 14 1 7.0693 -3.4520 -5.7216 15 6 8.8757 -2.2839 -5.8375 16 7 9.4082 -1.1287 -5.5362 17 14 9.7513 -3.4367 -7.0180 18 1 9.3968 -3.0777 -8.4147 19 1 11.2196 -3.3133 -6.8327 20 1 9.3338 -4.8354 -6.7453 21 7 5.8540 -1.9633 -3.8635 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.6962 -1.6479 1.2229 26 1 3.0261 -0.6500 1.2560 27 1 1.6055 -0.2618 -2.1369 28 1 1.7518 -1.7715 -1.2055 29 1 3.9995 -1.0728 -0.4258 30 1 3.8533 0.4369 -1.3572 31 1 3.4260 -1.7350 -3.1109 32 1 5.9542 -0.2005 -1.0401 33 1 9.1282 -1.3867 -3.4479 34 1 10.2579 -0.8699 -5.9260 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159777795.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:56 Heat of formation + Delta-G solvation = 1.197523 kcal Electronic energy + Delta-G solvation = -16002.142642 eV Core-core repulsion = 13353.889020 eV Total energy + Delta-G solvation = -2648.253621 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.97515 -38.59363 -36.58186 -35.66269 -34.07903 -31.56564 -30.06577 -29.05787 -27.89149 -24.72833 -24.06254 -22.86530 -21.48961 -19.58479 -18.21605 -17.51133 -17.05429 -16.88600 -16.61131 -16.23402 -15.54159 -15.31906 -14.99873 -14.71777 -14.23909 -13.57922 -13.41348 -13.05913 -13.00457 -12.79738 -12.67354 -12.60552 -12.13828 -11.99964 -11.78823 -11.75644 -11.73658 -11.26677 -10.41077 -9.64578 -9.34156 -8.86384 -8.54170 -6.68145 0.71090 1.08333 1.40994 1.52374 1.59747 2.17256 2.36973 2.64230 3.68886 3.72778 3.77487 4.01418 4.15624 4.17709 4.32152 4.44231 4.48641 4.57300 4.63809 4.89254 4.95263 5.01770 5.01819 5.09818 5.21004 5.28156 5.35002 5.70487 6.04270 6.26042 6.27284 6.45105 6.57060 6.61393 6.86597 7.36071 7.83413 8.15905 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.061551 B = 0.004435 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.797272 B = 6312.378402 C = 6591.571350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.093 3.907 3 H 0.081 0.919 4 N -0.850 5.850 5 C -0.152 4.152 6 C 0.133 3.867 7 N -0.721 5.721 8 C 0.370 3.630 9 C -0.165 4.165 10 N -0.429 5.429 11 C -0.074 4.074 12 C 0.239 3.761 13 C -0.454 4.454 14 H 0.086 0.914 15 C 0.040 3.960 16 N -0.805 5.805 17 Si 1.004 2.996 18 H -0.258 1.258 19 H -0.258 1.258 20 H -0.256 1.256 21 N -0.612 5.612 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.344 0.656 26 H 0.343 0.657 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.399 0.601 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.796 -0.130 5.358 12.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.019 4.019 3 H 0.099 0.901 4 N -0.380 5.380 5 C -0.192 4.192 6 C 0.009 3.991 7 N -0.357 5.357 8 C 0.127 3.873 9 C -0.327 4.327 10 N -0.141 5.141 11 C -0.243 4.243 12 C 0.111 3.889 13 C -0.487 4.487 14 H 0.104 0.896 15 C -0.180 4.180 16 N -0.430 5.430 17 Si 0.822 3.178 18 H -0.183 1.183 19 H -0.182 1.182 20 H -0.179 1.179 21 N -0.342 5.342 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.157 0.843 26 H 0.157 0.843 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.234 0.766 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.066 0.742 5.996 12.608 hybrid contribution 0.773 -0.938 -1.412 1.863 sum -10.293 -0.196 4.585 11.269 Atomic orbital electron populations 1.21761 0.93265 1.02364 1.02400 1.21376 0.96292 0.97966 0.86268 0.90128 1.59002 1.16770 1.21817 1.40442 1.22565 0.92731 1.02466 1.01458 1.21405 0.95116 0.96199 0.86391 1.44269 1.01788 1.61490 1.28184 1.19580 0.87038 0.90346 0.90365 1.22461 0.89229 1.15570 1.05405 1.67640 1.15768 1.12551 1.18148 1.23269 1.00716 1.06836 0.93508 1.19395 0.86592 0.89500 0.93435 1.19653 1.03874 1.16371 1.08846 0.89564 1.27030 0.96266 0.96246 0.98432 1.69799 1.17483 1.19107 1.36630 0.84874 0.77486 0.78318 0.77082 1.18258 1.18169 1.17924 1.68480 1.16341 1.29028 1.20372 0.92414 0.91926 0.91431 0.84280 0.84324 0.90383 0.90867 0.92409 0.92710 0.76626 0.83086 0.83806 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.49 71.98 0.68 -1.28 16 2 C 0.09 1.53 3.41 44.91 0.15 1.69 16 3 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 4 N -0.85 -14.27 9.18 -168.67 -1.55 -15.82 16 5 C -0.15 -2.83 4.97 30.60 0.15 -2.68 16 6 C 0.13 3.44 4.66 86.38 0.40 3.84 16 7 N -0.72 -25.58 5.72 -344.62 -1.97 -27.56 16 8 C 0.37 17.65 7.66 133.38 1.02 18.68 16 9 C -0.17 -8.03 10.50 85.07 0.89 -7.14 16 10 N -0.43 -23.42 10.47 -192.23 -2.01 -25.44 16 11 C -0.07 -4.25 9.88 85.28 0.84 -3.41 16 12 C 0.24 13.81 6.41 40.15 0.26 14.07 16 13 C -0.45 -24.88 9.28 23.46 0.22 -24.66 16 14 H 0.09 4.60 7.91 -2.91 -0.02 4.58 16 15 C 0.04 1.94 5.13 85.30 0.44 2.38 16 16 N -0.81 -41.05 10.97 21.84 0.24 -40.81 16 17 Si 1.00 36.23 29.60 68.60 2.03 38.26 16 18 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 19 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 20 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 21 N -0.61 -33.60 10.49 -185.99 -1.95 -35.55 16 22 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.34 5.15 9.00 -89.69 -0.81 4.35 16 26 H 0.34 5.89 7.55 -89.70 -0.68 5.22 16 27 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.06 1.46 6.67 -2.39 -0.02 1.44 16 30 H 0.05 1.47 7.92 -2.39 -0.02 1.45 16 31 H 0.40 13.30 8.60 -92.71 -0.80 12.50 16 32 H 0.15 6.21 6.70 -2.91 -0.02 6.19 16 33 H 0.14 8.35 6.17 -2.91 -0.02 8.33 16 34 H 0.30 13.45 8.29 -92.71 -0.77 12.68 16 Total: -1.00 -65.37 286.81 -1.29 -66.66 By element: Atomic # 1 Polarization: 39.89 SS G_CDS: -1.14 Total: 38.75 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 5.06 Total: 1.50 kcal Atomic # 7 Polarization: -137.93 SS G_CDS: -7.24 Total: -145.17 kcal Atomic # 14 Polarization: 36.23 SS G_CDS: 2.03 Total: 38.26 kcal Total: -65.37 -1.29 -66.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159777795.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.858 kcal (2) G-P(sol) polarization free energy of solvation -65.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds