Wall clock time and date at job start Sun Mar 29 2020 21:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 111.00221 * 2 1 4 4 C 1.46905 * 110.99934 * 123.95554 * 2 1 3 5 5 C 1.53001 * 109.47189 * 66.04336 * 4 2 1 6 6 N 1.46495 * 109.47290 * 179.97438 * 5 4 2 7 7 C 1.37935 * 120.00038 * 179.97438 * 6 5 4 8 8 N 1.32611 * 120.23957 * 0.02562 * 7 6 5 9 9 C 1.32239 * 120.09150 * 179.97438 * 8 7 6 10 10 C 1.38975 * 120.56806 * 359.97438 * 9 8 7 11 11 N 1.31718 * 120.47247 * 0.02562 * 10 9 8 12 12 C 1.33908 * 119.89621 * 0.02562 * 11 10 9 13 13 C 1.40816 * 120.27629 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00320 * 179.97438 * 13 12 11 15 15 C 1.40118 * 120.00062 * 359.97047 * 13 12 11 16 16 N 1.30729 * 120.00035 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00103 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.46889 * 90.00131 * 17 15 13 19 19 H 1.48501 * 109.46890 * 210.00188 * 17 15 13 20 20 H 1.48496 * 109.47110 * 330.00208 * 17 15 13 21 21 H 1.09003 * 109.46816 * 296.04850 * 1 2 3 22 22 H 1.08996 * 109.47009 * 56.04344 * 1 2 3 23 23 H 1.08998 * 109.47620 * 176.04763 * 1 2 3 24 24 H 1.09004 * 109.47412 * 183.95235 * 3 2 1 25 25 H 1.08997 * 109.47510 * 303.95305 * 3 2 1 26 26 H 1.09004 * 109.47384 * 63.95774 * 3 2 1 27 27 H 1.09001 * 109.46795 * 306.04225 * 4 2 1 28 28 H 1.09004 * 109.47205 * 186.04381 * 4 2 1 29 29 H 1.09004 * 109.47096 * 59.99770 * 5 4 2 30 30 H 1.09004 * 109.47084 * 300.00120 * 5 4 2 31 31 H 0.97005 * 119.99837 * 0.02562 * 6 5 4 32 32 H 1.07998 * 119.72196 * 180.02562 * 9 8 7 33 33 H 1.07998 * 119.76395 * 179.72244 * 10 9 8 34 34 H 0.97003 * 120.00359 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6314 -2.2427 0.9704 6 7 2.1569 -3.0067 2.1045 7 6 1.9508 -4.3688 2.1732 8 7 1.2782 -4.9917 1.2150 9 6 1.0828 -6.2978 1.2836 10 6 1.5779 -7.0312 2.3552 11 7 2.2491 -6.4352 3.3192 12 6 2.4570 -5.1133 3.2692 13 6 3.1740 -4.4681 4.2952 14 1 3.3395 -3.4018 4.2502 15 6 3.6727 -5.2095 5.3745 16 7 3.4728 -6.5003 5.4288 17 14 4.6232 -4.3535 6.7359 18 1 3.6810 -3.9124 7.7955 19 1 5.6142 -5.2955 7.3154 20 1 5.3299 -3.1722 6.1789 21 1 -0.3633 0.4513 0.9233 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3634 -1.0252 -0.0708 24 1 3.0829 1.3432 -0.0708 25 1 1.5899 1.9163 -0.8524 26 1 1.7045 1.8723 0.9233 27 1 1.5611 -0.3872 2.0628 28 1 3.0798 -0.6612 1.1756 29 1 2.0657 -2.6214 0.0451 30 1 0.5471 -2.3475 0.9323 31 1 2.6491 -2.5545 2.8075 32 1 0.5345 -6.7990 0.4997 33 1 1.4069 -8.0966 2.4004 34 1 3.8184 -7.0137 6.1758 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161666302.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:14 Heat of formation + Delta-G solvation = 56.228867 kcal Electronic energy + Delta-G solvation = -16366.200739 eV Core-core repulsion = 13720.333456 eV Total energy + Delta-G solvation = -2645.867283 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.95748 -37.64438 -34.77675 -33.94075 -31.51725 -30.24726 -27.76118 -27.52589 -25.85098 -23.89366 -21.96423 -21.20913 -20.70086 -17.57865 -16.61533 -16.12656 -15.52406 -15.10957 -14.79863 -14.49568 -14.05804 -13.93463 -13.23230 -12.86962 -12.73370 -12.39328 -12.04785 -11.78979 -11.72963 -11.43403 -11.35706 -11.20620 -10.95386 -10.58617 -10.19920 -9.79706 -9.33903 -9.32446 -8.53017 -8.38561 -7.31541 -6.75971 -6.38985 -4.39911 2.68416 3.05400 3.06931 3.09559 3.28457 3.78360 3.89655 4.60244 4.76178 5.08926 5.13294 5.30550 5.34866 5.55479 5.62283 5.73076 5.76971 5.89125 5.92988 6.05398 6.19393 6.33979 6.42614 6.54377 6.77681 6.99747 7.02106 7.03567 7.10059 7.69373 7.99824 8.14809 8.43153 8.64948 8.90156 9.50517 10.03163 10.26512 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.022075 B = 0.007004 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.114420 B = 3996.634713 C = 5160.133059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.544 5.544 3 C 0.026 3.974 4 C 0.043 3.957 5 C 0.149 3.851 6 N -0.726 5.726 7 C 0.263 3.737 8 N -0.499 5.499 9 C -0.084 4.084 10 C 0.028 3.972 11 N -0.449 5.449 12 C 0.194 3.806 13 C -0.424 4.424 14 H 0.082 0.918 15 C 0.069 3.931 16 N -0.714 5.714 17 Si 0.907 3.093 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.262 1.262 21 H 0.024 0.976 22 H 0.065 0.935 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.023 0.977 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.401 0.599 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.470 10.409 -3.861 11.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.268 5.268 3 C -0.123 4.123 4 C -0.085 4.085 5 C 0.023 3.977 6 N -0.368 5.368 7 C 0.017 3.983 8 N -0.221 5.221 9 C -0.238 4.238 10 C -0.135 4.135 11 N -0.167 5.167 12 C 0.060 3.940 13 C -0.458 4.458 14 H 0.100 0.900 15 C -0.157 4.157 16 N -0.337 5.337 17 Si 0.731 3.269 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.185 1.185 21 H 0.043 0.957 22 H 0.084 0.916 23 H 0.095 0.905 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.238 0.762 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.415 9.864 -4.380 10.885 hybrid contribution 0.238 0.814 1.541 1.760 sum -1.177 10.678 -2.839 11.111 Atomic orbital electron populations 1.22476 0.87283 1.02957 1.00106 1.61859 1.08186 1.13504 1.43252 1.22374 1.00817 0.88816 1.00260 1.22330 1.00466 0.94454 0.91273 1.20838 0.98243 0.88115 0.90526 1.43566 1.63554 1.03863 1.25794 1.19263 0.99657 0.85381 0.94018 1.67311 1.17109 1.10678 1.26982 1.22276 1.10097 0.89955 1.01469 1.23149 0.97895 0.99633 0.92787 1.69487 1.15482 1.07929 1.23772 1.19043 0.94192 0.89156 0.91646 1.19216 1.28667 0.95026 1.02928 0.90017 1.26007 0.95868 0.94777 0.99041 1.70097 1.30437 1.06372 1.26744 0.86334 0.79680 0.80099 0.80774 1.19438 1.20066 1.18547 0.95716 0.91606 0.90546 0.91343 0.91467 0.95796 0.94475 0.90417 0.92398 0.93266 0.76214 0.85998 0.85859 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.32 60.06 0.56 0.79 16 2 N -0.54 -7.02 5.02 -251.26 -1.26 -8.28 16 3 C 0.03 0.26 9.57 60.06 0.57 0.84 16 4 C 0.04 0.61 5.07 -3.82 -0.02 0.59 16 5 C 0.15 2.64 5.62 -4.04 -0.02 2.61 16 6 N -0.73 -15.09 5.60 -59.89 -0.34 -15.43 16 7 C 0.26 6.62 7.51 -154.83 -1.16 5.45 16 8 N -0.50 -12.53 9.71 -11.67 -0.11 -12.65 16 9 C -0.08 -2.02 11.22 -17.10 -0.19 -2.21 16 10 C 0.03 0.71 11.21 -17.33 -0.19 0.51 16 11 N -0.45 -12.60 8.03 -10.79 -0.09 -12.68 16 12 C 0.19 5.29 6.56 -84.61 -0.56 4.74 16 13 C -0.42 -10.90 8.89 -37.90 -0.34 -11.24 16 14 H 0.08 1.89 6.12 -52.49 -0.32 1.57 16 15 C 0.07 1.70 5.50 -17.32 -0.10 1.61 16 16 N -0.71 -18.86 11.48 55.56 0.64 -18.22 16 17 Si 0.91 18.04 29.56 -169.99 -5.03 13.01 16 18 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 19 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 21 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 22 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 23 H 0.08 0.97 6.47 -51.93 -0.34 0.63 16 24 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 25 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 26 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 28 H 0.08 1.06 8.06 -51.93 -0.42 0.64 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.05 0.91 6.55 -51.93 -0.34 0.57 16 31 H 0.40 7.78 6.45 -40.82 -0.26 7.51 16 32 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 33 H 0.12 2.71 8.06 -52.49 -0.42 2.29 16 34 H 0.27 6.55 8.29 -40.82 -0.34 6.21 16 LS Contribution 286.18 15.07 4.31 4.31 Total: -1.00 -30.23 286.18 -7.93 -38.16 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -4.61 Total: 8.08 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -1.44 Total: 3.69 kcal Atomic # 7 Polarization: -66.10 SS G_CDS: -1.16 Total: -67.26 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.23 -7.93 -38.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161666302.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.390 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds