Wall clock time and date at job start Sun Mar 29 2020 21:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 111.00221 * 2 1 4 4 C 1.46905 * 110.99934 * 123.95554 * 2 1 3 5 5 C 1.53001 * 109.47189 * 66.04336 * 4 2 1 6 6 N 1.46495 * 109.47290 * 179.97438 * 5 4 2 7 7 C 1.37935 * 120.00038 * 179.97438 * 6 5 4 8 8 N 1.32611 * 120.23957 * 0.02562 * 7 6 5 9 9 C 1.32239 * 120.09150 * 179.97438 * 8 7 6 10 10 C 1.38975 * 120.56806 * 359.97438 * 9 8 7 11 11 N 1.31718 * 120.47247 * 0.02562 * 10 9 8 12 12 C 1.33908 * 119.89621 * 0.02562 * 11 10 9 13 13 C 1.40816 * 120.27629 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00320 * 179.97438 * 13 12 11 15 15 C 1.40118 * 120.00062 * 359.97047 * 13 12 11 16 16 N 1.30729 * 120.00035 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00103 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.46889 * 90.00131 * 17 15 13 19 19 H 1.48501 * 109.46890 * 210.00188 * 17 15 13 20 20 H 1.48496 * 109.47110 * 330.00208 * 17 15 13 21 21 H 1.09003 * 109.46816 * 296.04850 * 1 2 3 22 22 H 1.08996 * 109.47009 * 56.04344 * 1 2 3 23 23 H 1.08998 * 109.47620 * 176.04763 * 1 2 3 24 24 H 1.09004 * 109.47412 * 183.95235 * 3 2 1 25 25 H 1.08997 * 109.47510 * 303.95305 * 3 2 1 26 26 H 1.09004 * 109.47384 * 63.95774 * 3 2 1 27 27 H 1.09001 * 109.46795 * 306.04225 * 4 2 1 28 28 H 1.09004 * 109.47205 * 186.04381 * 4 2 1 29 29 H 1.09004 * 109.47096 * 59.99770 * 5 4 2 30 30 H 1.09004 * 109.47084 * 300.00120 * 5 4 2 31 31 H 0.97005 * 119.99837 * 0.02562 * 6 5 4 32 32 H 1.07998 * 119.72196 * 180.02562 * 9 8 7 33 33 H 1.07998 * 119.76395 * 179.72244 * 10 9 8 34 34 H 0.97003 * 120.00359 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6314 -2.2427 0.9704 6 7 2.1569 -3.0067 2.1045 7 6 1.9508 -4.3688 2.1732 8 7 1.2782 -4.9917 1.2150 9 6 1.0828 -6.2978 1.2836 10 6 1.5779 -7.0312 2.3552 11 7 2.2491 -6.4352 3.3192 12 6 2.4570 -5.1133 3.2692 13 6 3.1740 -4.4681 4.2952 14 1 3.3395 -3.4018 4.2502 15 6 3.6727 -5.2095 5.3745 16 7 3.4728 -6.5003 5.4288 17 14 4.6232 -4.3535 6.7359 18 1 3.6810 -3.9124 7.7955 19 1 5.6142 -5.2955 7.3154 20 1 5.3299 -3.1722 6.1789 21 1 -0.3633 0.4513 0.9233 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3634 -1.0252 -0.0708 24 1 3.0829 1.3432 -0.0708 25 1 1.5899 1.9163 -0.8524 26 1 1.7045 1.8723 0.9233 27 1 1.5611 -0.3872 2.0628 28 1 3.0798 -0.6612 1.1756 29 1 2.0657 -2.6214 0.0451 30 1 0.5471 -2.3475 0.9323 31 1 2.6491 -2.5545 2.8075 32 1 0.5345 -6.7990 0.4997 33 1 1.4069 -8.0966 2.4004 34 1 3.8184 -7.0137 6.1758 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161666302.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:14 Heat of formation + Delta-G solvation = 34.729791 kcal Electronic energy + Delta-G solvation = -16367.133009 eV Core-core repulsion = 13720.333456 eV Total energy + Delta-G solvation = -2646.799553 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.83999 -38.76952 -36.37752 -35.82991 -33.42773 -31.88858 -29.22994 -28.48000 -27.75001 -25.25288 -23.72842 -22.97329 -21.97001 -19.48848 -18.35572 -17.78490 -16.81611 -16.64140 -16.16402 -15.84549 -15.62291 -15.37017 -14.78272 -14.50223 -14.35985 -13.84392 -13.27655 -13.18415 -12.98894 -12.86161 -12.60592 -12.44905 -12.36915 -12.11777 -11.93556 -11.61883 -11.28398 -11.13935 -10.40628 -9.34983 -9.24113 -8.60697 -8.26262 -6.33346 0.80669 1.25951 1.43744 1.55880 1.58693 2.23216 2.49817 2.88810 3.26485 3.90480 3.93798 4.11523 4.22836 4.31332 4.35873 4.46472 4.53520 4.55332 4.68467 4.73646 4.91366 4.99299 5.02622 5.04816 5.08151 5.14276 5.23423 5.81560 5.98182 6.08411 6.13150 6.30097 6.69073 6.79346 7.00539 7.62535 8.09838 8.44150 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.022075 B = 0.007004 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.114420 B = 3996.634713 C = 5160.133059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.559 5.559 3 C 0.026 3.974 4 C 0.055 3.945 5 C 0.156 3.844 6 N -0.717 5.717 7 C 0.257 3.743 8 N -0.514 5.514 9 C -0.085 4.085 10 C 0.008 3.992 11 N -0.486 5.486 12 C 0.159 3.841 13 C -0.445 4.445 14 H 0.101 0.899 15 C 0.021 3.979 16 N -0.756 5.756 17 Si 0.989 3.011 18 H -0.264 1.264 19 H -0.273 1.273 20 H -0.248 1.248 21 H 0.029 0.971 22 H 0.085 0.915 23 H 0.059 0.941 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.030 0.970 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.407 0.593 32 H 0.154 0.846 33 H 0.146 0.854 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.016 12.403 -3.625 12.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.283 5.283 3 C -0.122 4.122 4 C -0.073 4.073 5 C 0.031 3.969 6 N -0.359 5.359 7 C 0.009 3.991 8 N -0.236 5.236 9 C -0.238 4.238 10 C -0.153 4.153 11 N -0.205 5.205 12 C 0.024 3.976 13 C -0.479 4.479 14 H 0.119 0.881 15 C -0.201 4.201 16 N -0.379 5.379 17 Si 0.809 3.191 18 H -0.189 1.189 19 H -0.197 1.197 20 H -0.171 1.171 21 H 0.048 0.952 22 H 0.103 0.897 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.101 0.899 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.245 0.755 32 H 0.171 0.829 33 H 0.163 0.837 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.975 11.885 -4.178 12.636 hybrid contribution 0.040 0.189 1.375 1.388 sum -0.935 12.074 -2.803 12.430 Atomic orbital electron populations 1.22484 0.86725 1.02324 1.01242 1.61846 1.08875 1.15101 1.42521 1.22443 1.01162 0.87280 1.01322 1.22142 1.01003 0.91973 0.92192 1.20844 0.97333 0.90164 0.88605 1.43636 1.62950 1.02619 1.26648 1.19476 0.99092 0.86964 0.93523 1.67423 1.17808 1.11227 1.27176 1.22761 1.09421 0.89851 1.01805 1.23541 0.98084 1.00850 0.92855 1.69424 1.16916 1.08828 1.25306 1.19531 0.95423 0.89564 0.93071 1.19683 1.28806 0.96141 1.03266 0.88148 1.27025 0.96409 0.95300 1.01347 1.70215 1.31517 1.08223 1.27921 0.85097 0.77989 0.79042 0.76963 1.18856 1.19744 1.17111 0.95230 0.89680 0.92214 0.90854 0.89908 0.95099 0.93856 0.89658 0.94120 0.94160 0.75512 0.82899 0.83695 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.32 127.69 1.19 1.63 16 2 N -0.56 -13.30 5.02 -948.83 -4.76 -18.06 16 3 C 0.03 0.45 9.57 127.69 1.22 1.67 16 4 C 0.06 1.47 5.07 86.30 0.44 1.91 16 5 C 0.16 5.45 5.62 86.38 0.49 5.93 16 6 N -0.72 -29.58 5.60 -343.40 -1.92 -31.51 16 7 C 0.26 13.01 7.51 134.04 1.01 14.02 16 8 N -0.51 -25.89 9.71 -190.82 -1.85 -27.74 16 9 C -0.08 -4.08 11.22 84.81 0.95 -3.12 16 10 C 0.01 0.42 11.21 84.89 0.95 1.38 16 11 N -0.49 -27.89 8.03 -188.05 -1.51 -29.40 16 12 C 0.16 8.80 6.56 40.35 0.26 9.06 16 13 C -0.44 -22.91 8.89 23.36 0.21 -22.70 16 14 H 0.10 4.56 6.12 -2.91 -0.02 4.54 16 15 C 0.02 1.04 5.50 85.31 0.47 1.51 16 16 N -0.76 -40.45 11.48 21.86 0.25 -40.20 16 17 Si 0.99 36.32 29.56 68.60 2.03 38.34 16 18 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 19 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 20 H -0.25 -8.47 7.11 99.48 0.71 -7.77 16 21 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 22 H 0.08 1.49 8.12 -2.39 -0.02 1.47 16 23 H 0.06 1.48 6.47 -2.39 -0.02 1.46 16 24 H 0.07 1.22 8.12 -2.38 -0.02 1.20 16 25 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16 26 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.04 1.11 8.12 -2.39 -0.02 1.09 16 28 H 0.09 2.14 8.06 -2.39 -0.02 2.12 16 29 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.04 1.49 6.55 -2.39 -0.02 1.47 16 31 H 0.41 15.46 6.45 -92.70 -0.60 14.86 16 32 H 0.15 6.19 8.06 -2.91 -0.02 6.16 16 33 H 0.15 6.42 8.06 -2.91 -0.02 6.40 16 34 H 0.28 13.54 8.29 -92.71 -0.77 12.77 16 Total: -1.00 -65.37 286.18 -0.08 -65.45 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: 0.50 Total: 31.83 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 7.19 Total: 11.28 kcal Atomic # 7 Polarization: -137.11 SS G_CDS: -9.80 Total: -146.91 kcal Atomic # 14 Polarization: 36.32 SS G_CDS: 2.03 Total: 38.34 kcal Total: -65.37 -0.08 -65.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161666302.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.183 kcal (2) G-P(sol) polarization free energy of solvation -65.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds