Wall clock time and date at job start Sun Mar 29 2020 21:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46899 * 111.00052 * 2 1 4 4 C 1.46893 * 110.99718 * 123.95323 * 2 1 3 5 5 C 1.52998 * 109.47240 * 169.99999 * 4 2 1 6 6 N 1.46499 * 109.47574 * 179.97438 * 5 4 2 7 7 C 1.38804 * 120.00247 * 180.02562 * 6 5 4 8 8 C 1.40081 * 120.75769 * 180.02562 * 7 6 5 9 9 N 1.31668 * 119.13739 * 180.02562 * 8 7 6 10 10 C 1.33595 * 120.78831 * 359.97438 * 9 8 7 11 11 C 1.41153 * 119.16706 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00184 * 359.97438 * 11 10 9 13 13 C 1.40045 * 119.99823 * 180.02562 * 11 10 9 14 14 N 1.30730 * 120.00049 * 359.72575 * 13 11 10 15 15 Si 1.86795 * 119.99981 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47317 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47320 * 120.00329 * 15 13 11 18 18 H 1.48501 * 109.47213 * 240.00189 * 15 13 11 19 19 N 1.33599 * 121.65831 * 0.27830 * 10 9 8 20 20 C 1.31651 * 120.79256 * 359.43897 * 19 10 9 21 21 H 1.09001 * 109.46948 * 296.05040 * 1 2 3 22 22 H 1.09005 * 109.46933 * 56.04562 * 1 2 3 23 23 H 1.08999 * 109.47130 * 176.04275 * 1 2 3 24 24 H 1.08994 * 109.46869 * 183.95166 * 3 2 1 25 25 H 1.09006 * 109.47129 * 303.95672 * 3 2 1 26 26 H 1.08996 * 109.47189 * 63.95005 * 3 2 1 27 27 H 1.09003 * 109.47531 * 49.99692 * 4 2 1 28 28 H 1.08998 * 109.47248 * 290.00061 * 4 2 1 29 29 H 1.08997 * 109.46847 * 59.99799 * 5 4 2 30 30 H 1.08998 * 109.47051 * 300.00183 * 5 4 2 31 31 H 0.97000 * 120.00052 * 0.02562 * 6 5 4 32 32 H 1.07995 * 120.43433 * 359.97438 * 8 7 6 33 33 H 0.97000 * 120.00283 * 180.02562 * 14 13 11 34 34 H 1.08001 * 120.43562 * 180.25207 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.5044 -0.9554 0.9704 6 7 4.0295 -1.7187 2.1052 7 6 5.3835 -2.0163 2.1745 8 6 5.9025 -2.7456 3.2520 9 7 7.1920 -3.0095 3.2858 10 6 8.0014 -2.5911 2.3088 11 6 9.3783 -2.8937 2.3793 12 1 9.7654 -3.4565 3.2159 13 6 10.2427 -2.4632 1.3650 14 7 9.7734 -1.7858 0.3501 15 14 12.0647 -2.8643 1.4579 16 1 12.3384 -3.6405 2.6940 17 1 12.4559 -3.6673 0.2717 18 1 12.8485 -1.6032 1.4822 19 7 7.5413 -1.8893 1.2693 20 6 6.2622 -1.5945 1.1684 21 1 -0.3633 0.4513 0.9233 22 1 -0.3633 0.5740 -0.8525 23 1 -0.3633 -1.0252 -0.0709 24 1 3.0828 1.3432 -0.0708 25 1 1.5898 1.9164 -0.8525 26 1 1.7044 1.8723 0.9232 27 1 1.5089 -1.7406 1.1757 28 1 1.7975 -0.2247 2.0627 29 1 3.9908 0.0193 0.9324 30 1 3.7023 -1.4966 0.0452 31 1 3.4310 -2.0162 2.8081 32 1 5.2535 -3.0863 4.0452 33 1 10.3720 -1.4880 -0.3527 34 1 5.8958 -1.0303 0.3235 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161668798.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:16 Heat of formation + Delta-G solvation = 60.046918 kcal Electronic energy + Delta-G solvation = -16043.993967 eV Core-core repulsion = 13398.292247 eV Total energy + Delta-G solvation = -2645.701720 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.97989 -37.82517 -35.19063 -33.33302 -31.66485 -30.25354 -28.08930 -27.70974 -25.32503 -23.91098 -22.68828 -21.20099 -20.72876 -17.75888 -16.45849 -16.09161 -15.68882 -15.20100 -14.84732 -14.57355 -14.25151 -14.05509 -13.41513 -12.92107 -12.62398 -12.52980 -12.10649 -11.88457 -11.79048 -11.50272 -11.22547 -11.13952 -11.09524 -10.53013 -10.12616 -9.73753 -9.34378 -9.12536 -8.86955 -8.53708 -7.21939 -6.73618 -6.36422 -4.33048 2.77931 2.95595 3.16003 3.22204 3.22334 3.63893 4.03013 4.50044 4.80891 4.90886 4.99863 5.12752 5.20642 5.40713 5.47327 5.52421 5.64993 5.80493 5.83073 5.99761 6.02003 6.09596 6.16769 6.32610 6.52408 6.83583 6.84964 7.14225 7.20549 7.43307 8.18153 8.32570 8.54643 8.62107 8.79115 9.26184 10.28559 10.44344 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.049411 B = 0.004659 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.537663 B = 6008.314975 C = 6477.013660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.019 3.981 4 C 0.047 3.953 5 C 0.142 3.858 6 N -0.753 5.753 7 C -0.038 4.038 8 C 0.102 3.898 9 N -0.567 5.567 10 C 0.369 3.631 11 C -0.414 4.414 12 H 0.089 0.911 13 C 0.068 3.932 14 N -0.726 5.726 15 Si 0.914 3.086 16 H -0.260 1.260 17 H -0.274 1.274 18 H -0.274 1.274 19 N -0.476 5.476 20 C 0.102 3.898 21 H 0.024 0.976 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.025 0.975 27 H 0.077 0.923 28 H 0.037 0.963 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.384 0.616 32 H 0.126 0.874 33 H 0.271 0.729 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.100 4.346 -1.309 13.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.129 4.129 4 C -0.081 4.081 5 C 0.016 3.984 6 N -0.391 5.391 7 C -0.143 4.143 8 C -0.073 4.073 9 N -0.286 5.286 10 C 0.127 3.873 11 C -0.452 4.452 12 H 0.107 0.893 13 C -0.156 4.156 14 N -0.350 5.350 15 Si 0.738 3.262 16 H -0.184 1.184 17 H -0.199 1.199 18 H -0.200 1.200 19 N -0.192 5.192 20 C -0.075 4.075 21 H 0.042 0.958 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.043 0.957 27 H 0.095 0.905 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.216 0.784 32 H 0.143 0.857 33 H 0.082 0.918 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.799 4.095 -2.066 12.660 hybrid contribution -0.866 0.446 0.885 1.316 sum -12.665 4.542 -1.181 13.506 Atomic orbital electron populations 1.22378 0.87237 1.02268 1.00374 1.61863 1.07788 1.14189 1.43074 1.22489 1.01681 0.88442 1.00298 1.22253 0.96101 0.98398 0.91373 1.20938 0.91266 0.95724 0.90514 1.43424 1.05165 1.64747 1.25756 1.19176 0.85187 1.08769 1.01191 1.22178 0.92683 0.96977 0.95441 1.68551 1.03216 1.26631 1.30183 1.19821 0.94037 0.89232 0.84168 1.19123 0.89216 1.30375 1.06438 0.89317 1.26001 1.01061 0.93959 0.94598 1.70158 1.35767 1.23117 1.05952 0.86174 0.81734 0.78961 0.79333 1.18361 1.19931 1.19952 1.69280 1.11002 1.14859 1.24079 1.22702 0.90174 0.98535 0.96077 0.95780 0.91322 0.91332 0.90550 0.91410 0.95651 0.90454 0.94525 0.93468 0.92523 0.78396 0.85694 0.91832 0.85649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.57 60.07 0.57 0.80 16 2 N -0.54 -6.12 5.02 -251.26 -1.26 -7.38 16 3 C 0.02 0.20 9.32 60.06 0.56 0.76 16 4 C 0.05 0.55 5.07 -3.83 -0.02 0.53 16 5 C 0.14 2.09 4.86 -4.04 -0.02 2.07 16 6 N -0.75 -12.72 5.71 -58.23 -0.33 -13.06 16 7 C -0.04 -0.84 6.72 -83.32 -0.56 -1.40 16 8 C 0.10 2.36 11.20 -16.93 -0.19 2.17 16 9 N -0.57 -15.42 10.34 -12.49 -0.13 -15.55 16 10 C 0.37 10.76 7.35 -158.23 -1.16 9.59 16 11 C -0.41 -11.82 9.35 -37.80 -0.35 -12.17 16 12 H 0.09 2.45 7.85 -52.49 -0.41 2.03 16 13 C 0.07 1.81 5.50 -17.34 -0.10 1.71 16 14 N -0.73 -19.86 11.41 55.55 0.63 -19.23 16 15 Si 0.91 19.31 29.56 -169.99 -5.02 14.29 16 16 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 17 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 19 N -0.48 -13.53 7.84 -12.49 -0.10 -13.63 16 20 C 0.10 2.50 10.58 -16.94 -0.18 2.32 16 21 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 22 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 23 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 24 H 0.08 0.85 6.47 -51.93 -0.34 0.51 16 25 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 26 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.08 0.86 8.06 -51.93 -0.42 0.44 16 28 H 0.04 0.42 8.12 -51.93 -0.42 0.00 16 29 H 0.05 0.73 6.40 -51.93 -0.33 0.40 16 30 H 0.06 0.92 7.99 -51.93 -0.41 0.50 16 31 H 0.38 5.59 8.50 -40.82 -0.35 5.24 16 32 H 0.13 2.43 8.06 -52.49 -0.42 2.01 16 33 H 0.27 6.67 8.29 -40.82 -0.34 6.33 16 34 H 0.13 2.78 6.88 -52.49 -0.36 2.42 16 LS Contribution 287.98 15.07 4.34 4.34 Total: -1.00 -31.44 287.98 -8.03 -39.47 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -4.71 Total: 4.37 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -1.45 Total: 6.38 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -1.19 Total: -68.85 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.44 -8.03 -39.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161668798.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.517 kcal (2) G-P(sol) polarization free energy of solvation -31.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds